Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83713695 .. 83714462

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTCGACACTGGAAATTTTGTGCTGGCAAACCGAAACTCCACGTACTTGTGGGAGAGTTTTGATCAGCCAATTGACACAATGCTTCCCACACAGAGTCTACAACAAAATTTCATACTCCGTGCTTGCTACACAATGACAAATTACTCGACAGGTAGATTCTTGTTTTCACTACAACCTGATGGAAATCTCGTGCTTTACACAACAAATTTCCCTCAAGATTCACCCAATTTCGCATATTGGTTAGTCAATACTGTAATTGGATTTCAAGTCATCTTCAATCAGTCTGGCTTTATTTACCTTACATCCAAGAATGGAACCATACTTAATACAATATCAGGTAACCCCATTGCAACGCAAGATTTCTACCAGCGAGCAACACTCGACCATGATGGAGTTTTGAGGCACTATGTTTACCCTAAAAGCAGCAGCTCAAGCGAGGAAAGATGCTTGTGTAGGCTTGATGAACAGGGACAACCAACTTGTCAATGTCCAAATGGCTACAGTCCTATTGATCCAAATGATGTGCTCAAAGGATGCAAACAGGATTTTGTTCCACAAAGCTGCAGCACCAGAGATGCCCCATCACCGGAGGATGATTTTGACTTTCAAGAGATGCCAAACACTAATATGCTTGGTGATGATTATGAGCATTTTAAAGTGGTGTCTGAGGATTGGTGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

229

Amino Acids

26.03

Weight (kDa)

4.41

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 39	6.2e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	3 cut(s)	16, 109, 208
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	269, 280, 611
AluBI	AGCT	2 cut(s)	432, 564
AluI	AGCT	2 cut(s)	432, 564
Alw21I	GWGCWC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	426, 429, 564, 567
ApoI	RAATTY	3 cut(s)	16, 109, 208
AsuHPI	GGTGA	3 cut(s)	216, 579, 650
BauI	CACGAG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	438, 441, 551, 579
BccI	CCATC	3 cut(s)	176, 386, 592
BclI	TGATCA	1 cut(s)	64
BfmI	CTRYAG	2 cut(s)	502, 565
BisI	GCNGC	4 cut(s)	427, 430, 565, 568
BlsI	GCNGC	4 cut(s)	428, 431, 566, 569
BmiI	GGNNCC	1 cut(s)	319
BmsI	GCATC	4 cut(s)	437, 527, 568, 606
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
BpuEI	CTTGAG	2 cut(s)	201, 418
BsaAI	YACGTR	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	186
BseGI	GGATG	3 cut(s)	305, 542, 601
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	438, 441, 551, 579
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	64, 514
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	64, 514
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	256, 506
BstBAI	YACGTR	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	27, 127, 375
BstDEI	CTNAG	1 cut(s)	669
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	305, 542, 601
BstKTI	GATC	2 cut(s)	67, 517
BstMBI	GATC	2 cut(s)	64, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstPI	GGTNACC	1 cut(s)	341
BstSFI	CTRYAG	2 cut(s)	502, 565
BstV1I	GCAGC	4 cut(s)	438, 441, 551, 579
BtsCI	GGATG	3 cut(s)	305, 542, 601
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	27, 127, 375
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	6 cut(s)	70, 291, 432, 460, 501, 564
CviKI_1	RGCY	6 cut(s)	70, 291, 432, 460, 501, 564
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	2 cut(s)	66, 516
DpnII	GATC	2 cut(s)	64, 514
DraI	TTTAAA	1 cut(s)	658
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
FaeI	CATG	1 cut(s)	392
FaiI	YATR	7 cut(s)	116, 238, 323, 390, 411, 632, 648
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	4 cut(s)	427, 430, 565, 568
FokI	GGATG	3 cut(s)	292, 549, 608
Fsp4HI	GCNGC	4 cut(s)	427, 430, 565, 568
GluI	GCNGC	4 cut(s)	427, 430, 565, 568
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	3 cut(s)	97, 159, 221
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	216, 579, 650
Hpy166II	GTNNAC	2 cut(s)	101, 415
Hpy188I	TCNGA	1 cut(s)	670
Hpy188III	TCNNGA	2 cut(s)	218, 611
Hpy8I	GTNNAC	2 cut(s)	101, 415
HpyCH4III	ACNGT	2 cut(s)	256, 506
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	353, 540, 567, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 514
Lsp1109I	GCAGC	4 cut(s)	438, 441, 551, 579
LweI	GCATC	4 cut(s)	437, 527, 568, 606
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	66, 516
MboI	GATC	2 cut(s)	64, 514
MboII	GAAGA	1 cut(s)	268
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	7 cut(s)	16, 72, 109, 142, 208, 229, 258
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	225, 396, 433, 586, 664
MseI	TTAA	2 cut(s)	327, 657
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeII	GATC	2 cut(s)	64, 514
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	159, 221
PkrI	GCNGC	4 cut(s)	428, 431, 566, 569
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	327, 657
SatI	GCNGC	4 cut(s)	427, 430, 565, 568
Sau3AI	GATC	2 cut(s)	64, 514
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	47, 157, 181, 303, 343, 434, 566
SfaNI	GCATC	4 cut(s)	437, 527, 568, 606
SfcI	CTRYAG	2 cut(s)	502, 565
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	216, 433
SmoI	CTYRAG	2 cut(s)	216, 433
Sse9I	AATT	7 cut(s)	16, 72, 109, 142, 208, 229, 258
TaaI	ACNGT	2 cut(s)	256, 506
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	3 cut(s)	6, 149, 384
TasI	AATT	7 cut(s)	16, 72, 109, 142, 208, 229, 258
TfiI	GAWTC	2 cut(s)	159, 221
Tru1I	TTAA	2 cut(s)	327, 657
Tru9I	TTAA	2 cut(s)	327, 657
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	4 cut(s)	426, 429, 564, 567
TspDTI	ATGAA	2 cut(s)	103, 480
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	3 cut(s)	16, 109, 208
XmiI	GTMKAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.