Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

62912837 .. 62913638

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0455700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGCCCAAAGCTGAGAAGAAGCCCGCCGAGAAGAAGCCGGCAGAGGAGAAGAAGTCCACCGTCGCCGAGAAGGCCCCCGCGGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCTGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATCGGGATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTTGAGAAGCTGGCTCAGGAGTCGTCGAAGCTCGCAAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATCCAGACTGCTGTCAGGCTTGTGCTTCCCGGTGAATTGGCCAAGCACGCCGTTTCTGAGGGAACAAAGGCGGTGACCAAGTTCACTAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

148

Amino Acids

16.23

Weight (kDa)

10.05

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	48 - 124	2.1e-20	Core histone H2A/H2B/H3/H4 domain
Histone_ABTB	PF26281	78 - 146	6.4e-07	Histone domain in ABTB family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	83
AciI	CCGC	6 cut(s)	27, 81, 83, 132, 135, 422
AclWI	GGATC	2 cut(s)	239, 346
AcoI	YGGCCR	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	5 cut(s)	14, 112, 264, 289, 310
AluI	AGCT	5 cut(s)	14, 112, 264, 289, 310
Alw26I	GTCTC	2 cut(s)	135, 170
AlwI	GGATC	2 cut(s)	239, 346
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	5 cut(s)	75, 99, 123, 243, 390
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	76, 202, 214
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	395, 436
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	2 cut(s)	202, 214
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	135, 170
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	2 cut(s)	202, 214
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	3 cut(s)	76, 202, 214
BmiI	GGNNCC	3 cut(s)	6, 78, 130
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	261
BoxI	GACNNNNGTC	1 cut(s)	362
BpmI	CTGGAG	2 cut(s)	159, 220
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	81, 96, 117, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
Bse118I	RCCGGY	2 cut(s)	40, 101
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	4 cut(s)	81, 96, 117, 246
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
BseMII	CTCAG	3 cut(s)	6, 308, 399
BseRI	GAGGAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	41, 102, 126, 381
BslI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
BsmAI	GTCTC	2 cut(s)	135, 170
BsnI	GGCC	5 cut(s)	77, 101, 125, 245, 392
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	186, 231, 351
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	6 cut(s)	27, 81, 83, 132, 135, 422
BspANI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BspCNI	CTCAG	3 cut(s)	7, 307, 400
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	6, 78, 130
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	239, 346
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	40, 101
BssAI	RCCGGY	2 cut(s)	40, 101
BssECI	CCNNGG	4 cut(s)	81, 96, 117, 246
BssMI	GATC	3 cut(s)	186, 231, 351
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	96, 117, 246
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	149, 161
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	6 cut(s)	27, 42, 103, 291, 312, 399
BstDEI	CTNAG	4 cut(s)	15, 294, 408, 444
BstDSI	CCRYGG	2 cut(s)	81, 246
BstEII	GGTNACC	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	189, 234, 354
BstMAI	GTCTC	2 cut(s)	135, 170
BstMBI	GATC	3 cut(s)	186, 231, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
BstPAI	GACNNNNGTC	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	83
BstX2I	RGATCY	3 cut(s)	186, 231, 351
BstYI	RGATCY	3 cut(s)	186, 231, 351
BsuRI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BtgI	CCRYGG	2 cut(s)	81, 246
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	6 cut(s)	27, 42, 103, 291, 312, 399
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	40, 101
Cfr13I	GGNCC	3 cut(s)	76, 202, 214
Cfr42I	CCGCGG	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	247, 256
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	15, 294, 408, 444
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	188, 233, 353
DpnII	GATC	3 cut(s)	186, 231, 351
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	149, 161
EarI	CTCTTC	2 cut(s)	149, 161
Eco130I	CCWWGG	3 cut(s)	96, 117, 246
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	202, 214
Eco88I	CYCGRG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	2 cut(s)	76, 202
EcoO65I	GGTNACC	1 cut(s)	424
EcoT14I	CCWWGG	3 cut(s)	96, 117, 246
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	96, 117, 246
FaeI	CATG	2 cut(s)	250, 259
FaiI	YATR	2 cut(s)	248, 257
FatI	CATG	2 cut(s)	246, 255
FauI	CCCGC	2 cut(s)	34, 88
Fnu4HI	GCNGC	2 cut(s)	132, 135
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	132, 135
GsuI	CTGGAG	2 cut(s)	159, 220
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	77, 101, 125, 245, 392
HapII	CCGG	4 cut(s)	41, 102, 126, 381
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	250, 259
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	4 cut(s)	41, 102, 126, 381
HphI	GGTGA	2 cut(s)	395, 436
Hpy166II	GTNNAC	3 cut(s)	60, 217, 435
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	5 cut(s)	229, 256, 296, 347, 355
Hpy8I	GTNNAC	3 cut(s)	60, 217, 435
Hpy99I	CGWCG	3 cut(s)	68, 307, 337
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
HpyF3I	CTNAG	4 cut(s)	15, 294, 408, 444
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	250, 259
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	2 cut(s)	40, 101
KroNI	GCCGGC	2 cut(s)	42, 103
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	186, 231, 351
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	117, 128
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	188, 233, 353
MboI	GATC	3 cut(s)	186, 231, 351
MboII	GAAGA	9 cut(s)	31, 46, 64, 100, 160, 163, 166, 178, 187
MflI	RGATCY	3 cut(s)	186, 231, 351
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	386
MluNI	TGGCCA	1 cut(s)	392
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	40, 115, 150, 215, 403
Mox20I	TGGCCA	1 cut(s)	392
MroNI	GCCGGC	2 cut(s)	40, 101
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	83, 137
MspI	CCGG	4 cut(s)	41, 102, 126, 381
MspR9I	CCNGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
NaeI	GCCGGC	2 cut(s)	42, 103
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	186, 231, 351
NgoMIV	GCCGGC	2 cut(s)	40, 101
NlaIII	CATG	2 cut(s)	250, 259
NlaIV	GGNNCC	3 cut(s)	6, 78, 130
NmeAIII	GCCGAG	2 cut(s)	55, 94
NmuCI	GTSAC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	161
PdiI	GCCGGC	2 cut(s)	42, 103
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	133, 136
PleI	GAGTC	1 cut(s)	307
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	6, 78, 130
PspPI	GGNCC	3 cut(s)	76, 202, 214
PspPPI	RGGWCCY	1 cut(s)	202
PsuI	RGATCY	3 cut(s)	186, 231, 351
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacII	CCGCGG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	161
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	3 cut(s)	186, 231, 351
Sau96I	GGNCC	3 cut(s)	76, 202, 214
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	9 cut(s)	16, 114, 182, 204, 216, 266, 291, 312, 320
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	202, 214
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	6 cut(s)	27, 81, 83, 132, 135, 422
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	3 cut(s)	96, 117, 246
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	386
TauI	GCSGC	2 cut(s)	134, 137
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	256, 272
VpaK11BI	GGWCC	2 cut(s)	202, 214
XagI	CCTNNNNNAGG	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.