Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83695501 .. 83696754

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTTTTGATCTTCTAAACCTTCTTTGCTTCATACTTCTCACGCTTCTTCCTTGTTCCACCACGGCTCAAACATCGAAAAACATATCTTTAGGGTCATCCCTCATTGCACAAAACGACGATAACAAATCCTGGCCATCCCCATCTGCCAATAGGGACAGTCTTGTGCCACAAGGATCAAAAGTTGAGCTCACCAGTGGTGGCCAGTTTGTGCTCAATGATGCAAAGAGCAGTCAAATATGGTCTGCCGATTCTTCTAGTACCGGAGTTTCCTATGCAGCTATGCTCGACACCGGAAATTTTGTGCTGGCTAACCGAAACTCCACCTACTTGTGGGAGAGTTTTGATCACCCAACTGACACAATGCTTCCTACACAGAGTCTACCACAAAGTGGCAAACTCTTTGCTCGCTACACGGTGGCAAATTACTCGACAGGTAGATTCATGTTTTCACTACAACCTGATGGAAATCTCGTGTTTTACACAACAAATTTCCCTCAAGATTCTCCCAACTTCGCATATTGGTCCGTCAATAATGAAATTGGATTTCAAGTCATCTTCAATCAGTTTGGCCTTATTTACCTGACATCCGAGAATGGGACCATACTGCATACAATATCAGGCAACCCCATTGCAACGCAACATTTCTACCAGCGAGCAACACTCGACTATGATGGAGTTTTGAGGCACTATGATTACCCTAAAAGCAGCAGCTCAAGCGAGGAAAGGTGGTCGACTTCCTCTTTCATACCGCCAAATATCTGCAGGTCAATTACCGCAGAGGTAGGAGGCGGTGCGTGTGGTTTCAACGGCTTGTGTAGGCTTGATGATCTAGGACGACCAACTTGTCAATGTCCAAATGGTTACAGTTTTATTGATCCACATGATGAGCTCAAAGGATGCAAACAGGACTTTGTTCCACAAAGCTGCAACGCTGAAGATGCCTCATCATCGGCTAATGATTTTGACTTTGAAGAGATGCAAAACACTAATATGCCTGGTGATGATTATGAGCATTTCCAAGGGGTGGCTGAGGATTGGTGCAGACAGAATTGCCTAGAGGATTGCTTTTGTGCTGTTGCCATTTTCAATAACGCCGGAGACTGTTTTAAGAAGGGACTTCCTTTTTCGAATGGGATGATTGATCCTAGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

386

Amino Acids

42.5

Weight (kDa)

4.49

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	50 - 129	2.2e-17	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	756
AccB7I	CCANNNNNTGG	2 cut(s)	392, 1027
AccI	GTMKAC	2 cut(s)	382, 734
AciI	CCGC	3 cut(s)	752, 777, 792
AclWI	GGATC	3 cut(s)	184, 872, 1139
AcoI	YGGCCR	2 cut(s)	134, 202
AcsI	RAATTY	2 cut(s)	298, 490
AcuI	CTGAAG	1 cut(s)	957
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	4 cut(s)	333, 392, 597, 1027
AgsI	TTSAA	5 cut(s)	551, 562, 808, 974, 1090
AjnI	CCWGG	2 cut(s)	131, 997
AluBI	AGCT	5 cut(s)	190, 281, 714, 892, 927
AluI	AGCT	5 cut(s)	190, 281, 714, 892, 927
Alw21I	GWGCWC	3 cut(s)	192, 216, 894
Alw26I	GTCTC	1 cut(s)	1095
AlwI	GGATC	3 cut(s)	184, 872, 1139
AoxI	GGCC	3 cut(s)	134, 202, 571
ApeKI	GCWGC	4 cut(s)	278, 708, 711, 927
ApoI	RAATTY	2 cut(s)	298, 490
AspS9I	GGNCC	2 cut(s)	525, 600
AsuHPI	GGTGA	3 cut(s)	184, 341, 1013
AsuII	TTCGAA	1 cut(s)	1130
AvaII	GGWCC	2 cut(s)	525, 600
BalI	TGGCCA	2 cut(s)	136, 204
BanII	GRGCYC	2 cut(s)	192, 894
BauI	CACGAG	1 cut(s)	473
Bbv12I	GWGCWC	3 cut(s)	192, 216, 894
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	4 cut(s)	290, 720, 723, 914
BccI	CCATC	4 cut(s)	145, 151, 458, 668
BceAI	ACGGC	2 cut(s)	81, 826
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	2 cut(s)	133, 999
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	1095
BfaI	CTAG	4 cut(s)	258, 833, 1058, 1149
BfmI	CTRYAG	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	756
BisI	GCNGC	4 cut(s)	279, 709, 712, 928
BlsI	GCNGC	4 cut(s)	280, 710, 713, 929
Bme1390I	CCNGG	2 cut(s)	133, 999
Bme18I	GGWCC	2 cut(s)	525, 600
BmgT120I	GGNCC	2 cut(s)	525, 600
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	2 cut(s)	133, 999
BmsI	GCATC	4 cut(s)	211, 890, 931, 969
BplI	GAGNNNNNCTC	2 cut(s)	648, 680
Bpu10I	CCTNAGC	1 cut(s)	1032
Bpu14I	TTCGAA	1 cut(s)	1130
BpuEI	CTTGAG	2 cut(s)	483, 700
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	63, 1021
BsaWI	WCCGGW	2 cut(s)	263, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 392, 597, 1027
Bse1I	ACTGG	2 cut(s)	195, 205
Bse3DI	GCAATG	2 cut(s)	105, 630
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	133, 999
BseDI	CCNNGG	2 cut(s)	63, 1021
BseGI	GGATG	5 cut(s)	98, 137, 587, 905, 1143
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	4 cut(s)	333, 392, 597, 1027
BseMI	GCAATG	2 cut(s)	105, 630
BseMII	CTCAG	1 cut(s)	1023
BseNI	ACTGG	2 cut(s)	195, 205
BseXI	GCAGC	4 cut(s)	290, 720, 723, 914
BsgI	GTGCAG	1 cut(s)	1063
BshFI	GGCC	3 cut(s)	136, 204, 573
BsiHKAI	GWGCWC	3 cut(s)	192, 216, 894
BsiSI	CCGG	3 cut(s)	264, 294, 1098
BslFI	GGGAC	3 cut(s)	170, 613, 1131
BslI	CCNNNNNNNGG	4 cut(s)	333, 392, 597, 1027
BsmAI	GTCTC	1 cut(s)	1095
BsmFI	GGGAC	3 cut(s)	170, 613, 1131
BsnI	GGCC	3 cut(s)	136, 204, 573
Bsp119I	TTCGAA	1 cut(s)	1130
Bsp1286I	GDGCHC	3 cut(s)	192, 216, 894
Bsp143I	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
BspACI	CCGC	3 cut(s)	752, 777, 792
BspANI	GGCC	3 cut(s)	136, 204, 573
BspCNI	CTCAG	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	601
BspMAI	CTGCAG	1 cut(s)	767
BspMI	ACCTGC	1 cut(s)	756
BspPI	GGATC	3 cut(s)	184, 872, 1139
BspT104I	TTCGAA	1 cut(s)	1130
BsrDI	GCAATG	2 cut(s)	105, 630
BsrI	ACTGG	2 cut(s)	195, 205
BssECI	CCNNGG	2 cut(s)	63, 1021
BssMI	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	1021
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	2 cut(s)	133, 999
Bst4CI	ACNGT	5 cut(s)	161, 418, 869, 1106, 1155
Bst6I	CTCTTC	1 cut(s)	969
BstBI	TTCGAA	1 cut(s)	1130
BstC8I	GCNNGC	3 cut(s)	309, 409, 657
BstDEI	CTNAG	1 cut(s)	1032
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	5 cut(s)	98, 137, 587, 905, 1143
BstKTI	GATC	6 cut(s)	13, 179, 349, 832, 880, 1147
BstMAI	GTCTC	1 cut(s)	1095
BstMBI	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	717, 941
BstNI	CCWGG	2 cut(s)	133, 999
BstSCI	CCNGG	2 cut(s)	131, 997
BstSFI	CTRYAG	1 cut(s)	763
BstV1I	GCAGC	4 cut(s)	290, 720, 723, 914
BsuRI	GGCC	3 cut(s)	136, 204, 573
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	5 cut(s)	98, 137, 587, 905, 1143
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	309, 409, 657
Cfr13I	GGNCC	2 cut(s)	525, 600
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	445, 884
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	1032
DpnI	GATC	6 cut(s)	12, 178, 348, 831, 879, 1146
DpnII	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
DraIII	CACNNNGTG	1 cut(s)	392
DrdI	GACNNNNNNGTC	1 cut(s)	846
DseDI	GACNNNNNNGTC	1 cut(s)	846
EaeI	YGGCCR	2 cut(s)	134, 202
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Ecl136II	GAGCTC	2 cut(s)	190, 892
Eco130I	CCWWGG	1 cut(s)	1021
Eco24I	GRGCYC	2 cut(s)	192, 894
Eco47I	GGWCC	2 cut(s)	525, 600
Eco53kI	GAGCTC	2 cut(s)	190, 892
Eco57I	CTGAAG	1 cut(s)	957
EcoICRI	GAGCTC	2 cut(s)	190, 892
EcoRII	CCWGG	2 cut(s)	131, 997
EcoT14I	CCWWGG	1 cut(s)	1021
EcoT38I	GRGCYC	2 cut(s)	192, 894
ErhI	CCWWGG	1 cut(s)	1021
FaeI	CATG	2 cut(s)	448, 887
FaqI	GGGAC	3 cut(s)	170, 613, 1131
FatI	CATG	2 cut(s)	444, 883
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	382, 734
Fnu4HI	GCNGC	4 cut(s)	279, 709, 712, 928
FokI	GGATG	5 cut(s)	85, 124, 574, 912, 1150
FriOI	GRGCYC	2 cut(s)	192, 894
Fsp4HI	GCNGC	4 cut(s)	279, 709, 712, 928
FspBI	CTAG	4 cut(s)	258, 833, 1058, 1149
GluI	GCNGC	4 cut(s)	279, 709, 712, 928
HaeIII	GGCC	3 cut(s)	136, 204, 573
HapII	CCGG	3 cut(s)	264, 294, 1098
Hin1II	CATG	2 cut(s)	448, 887
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HinfI	GANTC	4 cut(s)	251, 379, 441, 503
HpaII	CCGG	3 cut(s)	264, 294, 1098
HphI	GGTGA	3 cut(s)	184, 341, 1013
Hpy166II	GTNNAC	2 cut(s)	383, 735
Hpy188I	TCNGA	1 cut(s)	592
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	2 cut(s)	383, 735
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	32, 1108
HpyCH4III	ACNGT	5 cut(s)	161, 418, 869, 1106, 1155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	717, 941
HpyF3I	CTNAG	1 cut(s)	1032
Hsp92II	CATG	2 cut(s)	448, 887
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
Lsp1109I	GCAGC	4 cut(s)	290, 720, 723, 914
LweI	GCATC	4 cut(s)	211, 890, 931, 969
MaeI	CTAG	4 cut(s)	258, 833, 1058, 1149
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	6 cut(s)	12, 178, 348, 831, 879, 1146
MboI	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
MboII	GAAGA	6 cut(s)	5, 41, 246, 550, 950, 986
MhlI	GDGCHC	3 cut(s)	192, 216, 894
MlsI	TGGCCA	2 cut(s)	136, 204
MluCI	AATT	6 cut(s)	298, 424, 490, 540, 771, 1051
MluNI	TGGCCA	2 cut(s)	136, 204
MlyI	GAGTC	1 cut(s)	388
Mox20I	TGGCCA	2 cut(s)	136, 204
MscI	TGGCCA	2 cut(s)	136, 204
MseI	TTAA	1 cut(s)	1110
MslI	CAYNNNNRTG	1 cut(s)	992
Msp20I	TGGCCA	2 cut(s)	136, 204
MspI	CCGG	3 cut(s)	264, 294, 1098
MspR9I	CCNGG	2 cut(s)	133, 999
MvaI	CCWGG	2 cut(s)	133, 999
MwoI	GCNNNNNNNGC	2 cut(s)	717, 941
NdeII	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
NlaIII	CATG	2 cut(s)	448, 887
NlaIV	GGNNCC	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	1130
PfeI	GAWTC	3 cut(s)	251, 441, 503
PflMI	CCANNNNNTGG	2 cut(s)	392, 1027
PkrI	GCNGC	4 cut(s)	280, 710, 713, 929
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Psp124BI	GAGCTC	2 cut(s)	192, 894
Psp6I	CCWGG	2 cut(s)	131, 997
PspGI	CCWGG	2 cut(s)	131, 997
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	2 cut(s)	525, 600
PstI	CTGCAG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	992
SacI	GAGCTC	2 cut(s)	192, 894
SalI	GTCGAC	1 cut(s)	733
SaqAI	TTAA	1 cut(s)	1110
SatI	GCNGC	4 cut(s)	279, 709, 712, 928
Sau3AI	GATC	6 cut(s)	10, 176, 346, 829, 877, 1144
Sau96I	GGNCC	2 cut(s)	525, 600
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	133, 999
SduI	GDGCHC	3 cut(s)	192, 216, 894
SfaNI	GCATC	4 cut(s)	211, 890, 931, 969
SfcI	CTRYAG	1 cut(s)	763
SfuI	TTCGAA	1 cut(s)	1130
SinI	GGWCC	2 cut(s)	525, 600
SmiMI	CAYNNNNRTG	1 cut(s)	992
SmlI	CTYRAG	2 cut(s)	498, 715
SmoI	CTYRAG	2 cut(s)	498, 715
Sse9I	AATT	6 cut(s)	298, 424, 490, 540, 771, 1051
SsiI	CCGC	3 cut(s)	752, 777, 792
SspMI	CTAG	4 cut(s)	258, 833, 1058, 1149
SstI	GAGCTC	2 cut(s)	192, 894
StyD4I	CCNGG	2 cut(s)	131, 997
StyI	CCWWGG	1 cut(s)	1021
TaaI	ACNGT	5 cut(s)	161, 418, 869, 1106, 1155
TaqI	TCGA	6 cut(s)	77, 288, 431, 666, 734, 1130
TasI	AATT	6 cut(s)	298, 424, 490, 540, 771, 1051
TfiI	GAWTC	3 cut(s)	251, 441, 503
Tru1I	TTAA	1 cut(s)	1110
Tru9I	TTAA	1 cut(s)	1110
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	4 cut(s)	278, 708, 711, 927
TspDTI	ATGAA	4 cut(s)	22, 433, 552, 736
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	2 cut(s)	392, 1027
VpaK11BI	GGWCC	2 cut(s)	525, 600
XapI	RAATTY	2 cut(s)	298, 490
XmiI	GTMKAC	2 cut(s)	382, 734
XspI	CTAG	4 cut(s)	258, 833, 1058, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.