Rorug05G0456100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
62983069 .. 62985126
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0456100.1

Sequence Viewer

Length: 927 bp
ATGTGTCTTAATGTGTTGTTTGTTTTATTTTTTTGCAATGTTGACATTCTTCGAGATGTCAACGGCAATCTTCCTGCCATGTTGAAGAATGTGGACCCCTTTGTTATTCAGCTAATTTGTAACCGCATGAACAAGTATCCCGTTGTCGGTTGGCATGAGATAGTGGATCACCATGGACCGAAAGATGCCGTGGGGCTTATGTCCATGTGGCATCTTTTGCAACCATCACTCTTTTCTCTTTCACCAAGATGCTGGAGCCCCCAGCGAAATTTGTTGTTGTTTGGTCCGGAGGGTGAGAATGTGGTGATTGCCCTCTTTGGGGTGGCCAAATGCAAGCAGCCATCTGTTATCTTCGTCGAAAATATTGACCGTGTTTTATCAGCGTGTGAAAGTGAAGGTCGGGATGAAGAATTTATGCGGACCAGAAATAGATTTTTGAAGGAGAAACAGACAGTTGAATGGGAGGCTGGACAGATTCTTGTGATTGGTTCAAGTACTAGACTGGAAGTGCTTTCCGAGGATGTGTTAAACGAGTTTCAGAATAGGTTATATCTACCCTTGCCCTCGTTCGAAGCTAGGTGGTCCATTATCGAGGGATATTTGGAGAGAGAAGGACTGTTTCGCCTTTCACGGTCTGACTTGCATGATATATGCCACATGACTGCAGGTTATTCTGGTACGGAATTAGAGGCGGTAGTCAAGCTTGCGGTCTCTCTCGGTCCATTGTCGAATTTCGATTCAAAAATTTATGATGACAATTTTTTCGCTCAGGAAACGTTACTTGCGGTGCTGCTGCCATTGACTACAGAGGATTTTCGCCGAGCTACGGCACTTCTTGCGCCATCTGTTTCGGCAGATGATGTCTCGGCCTATGAGGTTTGGGATATGAAAAACGGCTCTGGAACTCTGGGGAAGAGGAGGAGCTGA

Protein Analysis

308

Amino Acids

34.85

Weight (kDa)

5.18

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 97 - 187 6.4e-08 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 5 cut(s) 124, 418, 692, 707, 785
AclI AACGTT 1 cut(s) 776
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 4 cut(s) 268, 410, 730, 744
AfaI GTAC 2 cut(s) 496, 679
AfiI CCNNNNNNNGG 4 cut(s) 146, 318, 319, 826
AgsI TTSAA 5 cut(s) 85, 439, 458, 492, 741
AluBI AGCT 5 cut(s) 112, 575, 703, 824, 924
AluI AGCT 5 cut(s) 112, 575, 703, 824, 924
Alw26I GTCTC 2 cut(s) 715, 868
AlwI GGATC 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 2 cut(s) 324, 867
ApeKI GCWGC 3 cut(s) 337, 790, 793
ApoI RAATTY 4 cut(s) 268, 410, 730, 744
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 6 cut(s) 94, 176, 284, 420, 582, 719
AsuHPI GGTGA 4 cut(s) 161, 234, 305, 316
AsuII TTCGAA 1 cut(s) 570
AvaII GGWCC 6 cut(s) 94, 176, 284, 420, 582, 719
BalI TGGCCA 1 cut(s) 326
BanII GRGCYC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 349, 777, 780
BccI CCATC 3 cut(s) 232, 349, 850
BceAI ACGGC 4 cut(s) 79, 173, 843, 910
BciVI GTATCC 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 715, 868
BfaI CTAG 2 cut(s) 498, 576
BfmI CTRYAG 2 cut(s) 663, 804
BfuAI ACCTGC 1 cut(s) 656
BfuI GTATCC 1 cut(s) 147
BisI GCNGC 3 cut(s) 338, 791, 794
BlsI GCNGC 3 cut(s) 339, 792, 795
BmcAI AGTACT 1 cut(s) 496
Bme18I GGWCC 6 cut(s) 94, 176, 284, 420, 582, 719
BmgT120I GGNCC 6 cut(s) 94, 176, 284, 420, 582, 719
BmiI GGNNCC 2 cut(s) 96, 257
BmsI GCATC 3 cut(s) 175, 220, 239
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 715
BsaJI CCNNGG 3 cut(s) 172, 189, 516
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 318, 319, 826
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 43
BseAI TCCGGA 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 172, 189, 516
BseGI GGATG 2 cut(s) 409, 526
BseLI CCNNNNNNNGG 4 cut(s) 146, 318, 319, 826
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 507
BseXI GCAGC 3 cut(s) 349, 777, 780
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 2 cut(s) 326, 869
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 4 cut(s) 146, 318, 319, 826
BsmAI GTCTC 2 cut(s) 715, 868
BsnI GGCC 2 cut(s) 326, 869
Bso31I GGTCTC 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 5 cut(s) 124, 418, 692, 707, 785
BspANI GGCC 2 cut(s) 326, 869
BspCNI CTCAG 1 cut(s) 781
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 96, 257
BspMAI CTGCAG 1 cut(s) 667
BspMI ACCTGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 3 cut(s) 172, 189, 516
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 4 cut(s) 371, 454, 618, 633
Bst6I CTCTTC 1 cut(s) 908
BstAPI GCANNNNNTGC 2 cut(s) 217, 836
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 335, 705
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 2 cut(s) 172, 189
BstF5I GGATG 2 cut(s) 409, 526
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 715, 868
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 217, 836
BstSFI CTRYAG 2 cut(s) 663, 804
BstV1I GCAGC 3 cut(s) 349, 777, 780
BstXI CCANNNNNNTGG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 147
BsuRI GGCC 2 cut(s) 326, 869
BtgI CCRYGG 2 cut(s) 172, 189
BtsCI GGATG 2 cut(s) 409, 526
BveI ACCTGC 1 cut(s) 656
Cac8I GCNNGC 2 cut(s) 335, 705
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 6 cut(s) 94, 176, 284, 420, 582, 719
Csp6I GTAC 2 cut(s) 495, 678
CviAII CATG 7 cut(s) 79, 127, 155, 173, 205, 644, 658
CviQI GTAC 2 cut(s) 495, 678
DdeI CTNAG 1 cut(s) 768
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 715
Eco47I GGWCC 6 cut(s) 94, 176, 284, 420, 582, 719
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 7 cut(s) 82, 130, 158, 176, 208, 647, 661
FatI CATG 7 cut(s) 78, 126, 154, 172, 204, 643, 657
Fnu4HI GCNGC 3 cut(s) 338, 791, 794
FokI GGATG 2 cut(s) 416, 533
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 338, 791, 794
FspBI CTAG 2 cut(s) 498, 576
GlaI GCGC 1 cut(s) 840
GluI GCNGC 3 cut(s) 338, 791, 794
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 2 cut(s) 326, 869
HapII CCGG 1 cut(s) 287
HhaI GCGC 1 cut(s) 841
Hin1II CATG 7 cut(s) 82, 130, 158, 176, 208, 647, 661
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 2 cut(s) 43, 61
HindII GTYRAC 2 cut(s) 43, 61
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 2 cut(s) 475, 737
HpaII CCGG 1 cut(s) 287
HphI GGTGA 4 cut(s) 161, 234, 305, 316
Hpy166II GTNNAC 3 cut(s) 43, 61, 94
Hpy188I TCNGA 3 cut(s) 517, 540, 637
Hpy188III TCNNGA 5 cut(s) 53, 287, 401, 770, 900
Hpy8I GTNNAC 3 cut(s) 43, 61, 94
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 389, 433, 605
HpyCH4III ACNGT 4 cut(s) 371, 454, 618, 633
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 5 cut(s) 36, 220, 333, 643, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 836
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 7 cut(s) 82, 130, 158, 176, 208, 647, 661
HspAI GCGC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 255, 921
Lsp1109I GCAGC 3 cut(s) 349, 777, 780
LweI GCATC 3 cut(s) 175, 220, 239
MaeI CTAG 2 cut(s) 498, 576
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 2 cut(s) 119, 777
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 6 cut(s) 41, 62, 97, 343, 419, 925
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 7 cut(s) 114, 268, 410, 683, 730, 744, 757
MluNI TGGCCA 1 cut(s) 326
Mox20I TGGCCA 1 cut(s) 326
MroI TCCGGA 1 cut(s) 286
MscI TGGCCA 1 cut(s) 326
MseI TTAA 2 cut(s) 9, 527
MslI CAYNNNNRTG 1 cut(s) 247
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 217, 836
NcoI CCATGG 1 cut(s) 172
NdeII GATC 1 cut(s) 166
NlaIII CATG 7 cut(s) 82, 130, 158, 176, 208, 647, 661
NlaIV GGNNCC 2 cut(s) 96, 257
NmeAIII GCCGAG 2 cut(s) 845, 845
NspV TTCGAA 1 cut(s) 570
PfeI GAWTC 2 cut(s) 475, 737
PkrI GCNGC 3 cut(s) 339, 792, 795
Psp1406I AACGTT 1 cut(s) 776
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 96, 257
PspPI GGNCC 6 cut(s) 94, 176, 284, 420, 582, 719
PstI CTGCAG 1 cut(s) 667
RsaI GTAC 2 cut(s) 496, 679
RsaNI GTAC 2 cut(s) 495, 678
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 2 cut(s) 9, 527
SatI GCNGC 3 cut(s) 338, 791, 794
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 6 cut(s) 94, 176, 284, 420, 582, 719
ScaI AGTACT 1 cut(s) 496
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 3 cut(s) 175, 220, 239
SfcI CTRYAG 2 cut(s) 663, 804
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 6 cut(s) 94, 176, 284, 420, 582, 719
SmiMI CAYNNNNRTG 1 cut(s) 247
Sse9I AATT 7 cut(s) 114, 268, 410, 683, 730, 744, 757
SsiI CCGC 5 cut(s) 124, 418, 692, 707, 785
SspI AATATT 1 cut(s) 364
SspMI CTAG 2 cut(s) 498, 576
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 4 cut(s) 371, 454, 618, 633
TaiI ACGT 1 cut(s) 779
TaqI TCGA 6 cut(s) 52, 357, 570, 591, 728, 735
TaqII GACCGA 2 cut(s) 193, 707
TasI AATT 7 cut(s) 114, 268, 410, 683, 730, 744, 757
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 2 cut(s) 475, 737
Tru1I TTAA 2 cut(s) 9, 527
Tru9I TTAA 2 cut(s) 9, 527
TseI GCWGC 3 cut(s) 337, 790, 793
TspDTI ATGAA 3 cut(s) 143, 420, 902
TspGWI ACGGA 1 cut(s) 695
VpaK11BI GGWCC 6 cut(s) 94, 176, 284, 420, 582, 719
XapI RAATTY 4 cut(s) 268, 410, 730, 744
XspI CTAG 2 cut(s) 498, 576
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.