Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

62945424 .. 62954152

Gene Structure 8729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0455900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATCGGGGTGGCGGAACAGAACCGAAAGAAGAGACGAAAGCAGAAGATGAATAGAAGAGACGAAAGCAGAAGATCTGGAAAGAAGAGAGAAGAAAGAAAAGACCGGTTGCAAGGAGAAAGAAGTGGAGAGGTTGAAGAATTTGGTCCAAGAGATTGCTGGGTTTTGGAAGAGATAGCTGATGTTCACAAAAGGGAATTTTCACGTCATCATCTGAGTAGAAGGTTAACAAGGTTAAATGTCATTTTGCATGTCAATTTCTACAAGACAATCTCAGAGCTTAGTTCAGCAACTAATAAAAATAAAGATTTTAATCCTAAGAGGGACCCCTGCATCTTTGAACGAATGATGGTACAAGTATACACTATTTTAGGAACAGTTTGCAGGCGGGTTCTTCAGTTGTCTTGCATTCAGGTCTGCTATAGGAATACTGAGGCAACGATTACGGATTTTGCAGACATTGAATCGACATCACTGTTGACTGAAGTCCAAGCTGCTATCATCACAGTTGAAGGGGGTTATCCCCTGTGGAGATCTTCCCTTCCTGTCCAAGACCATGAGTTGTTAAGAATGAAGCAGCTAATATCTATTAGAGTTTTGGTGAAAATTGAGAGCTTCGAAGCCATTCACAAGGCTTCCCATGGAGTCATGATTGCTCAGGTTGATCATGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTTTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTAATGAACCAGTTTCAATGAAACCGTGTGCTTCCCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

271

Amino Acids

31.33

Weight (kDa)

8.59

Isoelectric Point (pI)

69.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	2 cut(s)	14, 388
AcsI	RAATTY	2 cut(s)	140, 197
AcuI	CTGAAG	2 cut(s)	380, 504
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	749
AflIII	ACRYGT	1 cut(s)	718
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	7 cut(s)	137, 341, 464, 512, 689, 701, 789
AjiI	CACGTC	1 cut(s)	206
AluBI	AGCT	6 cut(s)	179, 280, 494, 580, 615, 674
AluI	AGCT	6 cut(s)	179, 280, 494, 580, 615, 674
Alw26I	GTCTC	2 cut(s)	28, 54
ApeKI	GCWGC	2 cut(s)	494, 577
ApoI	RAATTY	2 cut(s)	140, 197
AsiGI	ACCGGT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	146, 325
AsuHPI	GGTGA	2 cut(s)	613, 767
AsuII	TTCGAA	1 cut(s)	618
AvaII	GGWCC	2 cut(s)	146, 325
BbvI	GCAGC	2 cut(s)	481, 589
BccI	CCATC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	28, 54
BfmI	CTRYAG	1 cut(s)	421
BglII	AGATCT	2 cut(s)	74, 533
BisI	GCNGC	2 cut(s)	495, 578
BlsI	GCNGC	2 cut(s)	496, 579
Bme18I	GGWCC	2 cut(s)	146, 325
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	146, 325
BmiI	GGNNCC	2 cut(s)	326, 327
BmsI	GCATC	1 cut(s)	342
BoxI	GACNNNNGTC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	640, 748
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	782
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	640, 748
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMII	CTCAG	4 cut(s)	206, 288, 423, 671
BseNI	ACTGG	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	481, 589
BseYI	CCCAGC	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	2 cut(s)	28, 54
BsmBI	CGTCTC	2 cut(s)	28, 54
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	408
Bsp119I	TTCGAA	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	3, 74, 533, 664
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	2 cut(s)	14, 388
BspCNI	CTCAG	4 cut(s)	207, 287, 424, 670
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	326, 327
BspT104I	TTCGAA	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	640, 748
BssMI	GATC	4 cut(s)	3, 74, 533, 664
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	640, 748
Bst1107I	GTATAC	1 cut(s)	361
Bst4CI	ACNGT	5 cut(s)	379, 477, 508, 767, 798
Bst6I	CTCTTC	4 cut(s)	26, 52, 80, 165
BstBI	TTCGAA	1 cut(s)	618
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	6 cut(s)	215, 274, 281, 318, 432, 657
BstDSI	CCRYGG	1 cut(s)	640
BstKTI	GATC	4 cut(s)	6, 77, 536, 667
BstMAI	GTCTC	2 cut(s)	28, 54
BstMBI	GATC	4 cut(s)	3, 74, 533, 664
BstNSI	RCATGY	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	481, 589
BstX2I	RGATCY	2 cut(s)	74, 533
BstYI	RGATCY	2 cut(s)	74, 533
BstZ17I	GTATAC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	473, 772
Cac8I	GCNNGC	1 cut(s)	386
CciI	TCATGA	1 cut(s)	648
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	146, 325
Csp6I	GTAC	1 cut(s)	353
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	5 cut(s)	251, 557, 641, 649, 668
CviJI	RGCY	8 cut(s)	179, 280, 494, 580, 615, 623, 635, 674
CviKI_1	RGCY	8 cut(s)	179, 280, 494, 580, 615, 623, 635, 674
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	6 cut(s)	215, 274, 281, 318, 432, 657
DpnI	GATC	4 cut(s)	5, 76, 535, 666
DpnII	GATC	4 cut(s)	3, 74, 533, 664
Eam1104I	CTCTTC	4 cut(s)	26, 52, 80, 165
EarI	CTCTTC	4 cut(s)	26, 52, 80, 165
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	640, 748
Eco47I	GGWCC	2 cut(s)	146, 325
Eco57I	CTGAAG	2 cut(s)	380, 504
EcoO109I	RGGNCCY	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	640, 748
ErhI	CCWWGG	2 cut(s)	640, 748
Esp3I	CGTCTC	2 cut(s)	28, 54
FaeI	CATG	5 cut(s)	254, 560, 644, 652, 671
FaiI	YATR	8 cut(s)	252, 361, 423, 558, 642, 650, 669, 814
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	5 cut(s)	250, 556, 640, 648, 667
FauI	CCCGC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	495, 578
Fsp4HI	GCNGC	2 cut(s)	495, 578
GluI	GCNGC	2 cut(s)	495, 578
GsaI	CCCAGC	1 cut(s)	163
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	5 cut(s)	254, 560, 644, 652, 671
HincII	GTYRAC	2 cut(s)	228, 480
HindII	GTYRAC	2 cut(s)	228, 480
HinfI	GANTC	3 cut(s)	464, 645, 689
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	613, 767
Hpy166II	GTNNAC	4 cut(s)	187, 228, 361, 480
Hpy188I	TCNGA	2 cut(s)	216, 277
Hpy188III	TCNNGA	2 cut(s)	78, 649
Hpy8I	GTNNAC	4 cut(s)	187, 228, 361, 480
HpyAV	CCTTC	3 cut(s)	216, 506, 551
HpyCH4III	ACNGT	5 cut(s)	379, 477, 508, 767, 798
HpyCH4IV	ACGT	2 cut(s)	205, 720
HpyCH4V	TGCA	6 cut(s)	112, 250, 333, 384, 408, 455
HpyF3I	CTNAG	6 cut(s)	215, 274, 281, 318, 432, 657
HpySE526I	ACGT	2 cut(s)	205, 720
Hsp92II	CATG	5 cut(s)	254, 560, 644, 652, 671
KflI	GGGWCCC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	3, 74, 533, 664
Lsp1109I	GCAGC	2 cut(s)	481, 589
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	2 cut(s)	205, 720
MalI	GATC	4 cut(s)	5, 76, 535, 666
MboI	GATC	4 cut(s)	3, 74, 533, 664
MflI	RGATCY	2 cut(s)	74, 533
MluCI	AATT	5 cut(s)	140, 197, 256, 606, 758
MlyI	GAGTC	1 cut(s)	654
MnlI	CCTC	4 cut(s)	124, 315, 427, 718
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	4 cut(s)	227, 236, 312, 566
MspI	CCGG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	3, 74, 533, 664
NlaIII	CATG	5 cut(s)	254, 560, 644, 652, 671
NlaIV	GGNNCC	2 cut(s)	326, 327
NspI	RCATGY	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	618
PagI	TCATGA	1 cut(s)	648
PctI	GAATGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	464, 689
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	496, 579
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	326, 327
PspPI	GGNCC	2 cut(s)	146, 325
PspPPI	RGGWCCY	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	74, 533
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	4 cut(s)	227, 236, 312, 566
SatI	GCNGC	2 cut(s)	495, 578
Sau3AI	GATC	4 cut(s)	3, 74, 533, 664
Sau96I	GGNCC	2 cut(s)	146, 325
SchI	GAGTC	1 cut(s)	654
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	618
SinI	GGWCC	2 cut(s)	146, 325
Sse9I	AATT	5 cut(s)	140, 197, 256, 606, 758
SsiI	CCGC	2 cut(s)	14, 388
StyI	CCWWGG	2 cut(s)	640, 748
TaaI	ACNGT	5 cut(s)	379, 477, 508, 767, 798
TaiI	ACGT	2 cut(s)	208, 723
TaqI	TCGA	2 cut(s)	467, 618
TasI	AATT	5 cut(s)	140, 197, 256, 606, 758
TfiI	GAWTC	2 cut(s)	464, 689
Tru1I	TTAA	4 cut(s)	227, 236, 312, 566
Tru9I	TTAA	4 cut(s)	227, 236, 312, 566
TscAI	CASTG	2 cut(s)	480, 772
TseI	GCWGC	2 cut(s)	494, 577
TspDTI	ATGAA	4 cut(s)	65, 587, 792, 806
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	480, 772
VpaK11BI	GGWCC	2 cut(s)	146, 325
XapI	RAATTY	2 cut(s)	140, 197
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.