Rorug05G0462100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63629708 .. 63630958
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0462100.1

Sequence Viewer

Length: 1251 bp
ATGGGAAATTTGACCAATCTAAGGATGCTGGACTTAAGTGGGAGTTACAATATTGGTATATTTCCATATAGTGTGCTGTCAAGATTGTGTAAATTAGAAGAACTGTACATGCAATGTAATTCTGGGAACTGGGGAAGCAAAATTCATGGAGGAGAAGAAACTAATGTTGGTCCTGATGAGTTGATTGGCTTGCCACTTTTAAACACCGTGAAGCTTCGCATATCTGATGCAGAATGCTTGCCTAAAAATCTTTTCTGGGATTGGCATTTGGTTACCTTTGATATATGTATCAGCAGAGAACCACCATCTAGAGACTACTCTTCAGAACCAATTTTCTCACACGATCATTCAAGGACCCTGACTCTTAACACAACAATCAACAGCTTACCAGATTGGTTTATCAACACAGTGACAGAGAAAGCAGTGAAACTACAGTACCTAAAGTGCAAGGGCCTAAAGAACATTCTTGTGGAATATGACAGAGGAAGGTTACATGGACTGAAGAATCTTGCTGTAATTGGTCCACATGAGAACTTGGAAGTGTTGATGGAAACAATAACACTGGTGCCGAATAAACCTGTGTTTGAGAACTTGGAAGAGTTGCATCTCCTTGGTGTGAGTTGCCTGAAGGAATTATGTGTTGGTGAATTACCCGTTGGGTCTCTATGCAATCTCAAGTTATTCAAGGTGGAATATTGCCATGACTTGGTAAAGACACTCTTACCATCAAATTTTTGGCAGAGACTACACAATATGGAAAAACTAATTTGTGAAGATATGAATCAAATGGAGTATGTTTTTGGATCCAAGGGGATGGAGTCAGAAGATATTATCTTGATAAAATTGAGAGAGATGATATTGTGGAATCTAGAGAATCTAATAGGCATATGCAATGGTCCTGCTCCAAATGCAGTCTTCCATAGTCTTAAAAGTTTGGCAGTGTATGGGTGCAAGAAACTGAAACATCTTTTCACATACGATATAGCTCATTGTCTTTTGCATTTGGAAGACCTTTCGGTGACTCAATGTTCTAGCTTGGACAGGGTTATCGAACCTAGCAAGGAAACAGTCAACAAGAAGATGGTTTTTCCTGAATTGAAAAACTTAGCTTTGTCATATCTTCCACAGCTCACAAGGTTCTGCAGTAGAAATATAATAAAAAAAAGTATAATTCCGGAAATCACCTCGGAAATAAATAATTCGTCAAATAATAATCAATCTCTGAAAATAAATCATATGCTCGAAATGTAA

Protein Analysis

416

Amino Acids

47.42

Weight (kDa)

6.18

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 198 - 343 5.4e-27 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 301 - 384 5.7e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 565
AccB7I CCANNNNNTGG 1 cut(s) 706
AccIII TCCGGA 1 cut(s) 1174
AclWI GGATC 2 cut(s) 798, 811
AcsI RAATTY 3 cut(s) 7, 141, 730
AcuI CTGAAG 3 cut(s) 306, 521, 647
AfaI GTAC 2 cut(s) 107, 437
AfiI CCNNNNNNNGG 2 cut(s) 21, 706
AflII CTTAAG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 351, 685, 1099
AjuI GAANNNNNNNTTGG 6 cut(s) 150, 182, 624, 639, 656, 671
AluBI AGCT 6 cut(s) 214, 384, 986, 1035, 1109, 1129
AluI AGCT 6 cut(s) 214, 384, 986, 1035, 1109, 1129
Alw26I GTCTC 3 cut(s) 306, 666, 736
AlwI GGATC 2 cut(s) 798, 811
Aor13HI TCCGGA 1 cut(s) 1174
AoxI GGCC 1 cut(s) 451
ApoI RAATTY 3 cut(s) 7, 141, 730
AspS9I GGNCC 5 cut(s) 170, 354, 451, 521, 896
AsuHPI GGTGA 3 cut(s) 656, 1030, 1174
AvaII GGWCC 4 cut(s) 170, 354, 521, 896
BaeI ACNNNNGTAYC 2 cut(s) 419, 452
BamHI GGATCC 1 cut(s) 803
BanI GGYRCC 1 cut(s) 565
BbsI GAAGAC 2 cut(s) 907, 1014
BccI CCATC 5 cut(s) 313, 541, 733, 808, 1075
BcoDI GTCTC 3 cut(s) 306, 666, 736
BfaI CTAG 4 cut(s) 309, 869, 1032, 1056
BfmI CTRYAG 2 cut(s) 431, 1141
BfrI CTTAAG 1 cut(s) 34
Bme18I GGWCC 4 cut(s) 170, 354, 521, 896
BmgT120I GGNCC 5 cut(s) 170, 354, 451, 521, 896
BmiI GGNNCC 3 cut(s) 356, 567, 805
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 3 cut(s) 15, 217, 613
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 907, 1014
BpuEI CTTGAG 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 780
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 610, 807, 1185
BsaWI WCCGGW 1 cut(s) 1174
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 706
Bse1I ACTGG 2 cut(s) 134, 567
Bse3DI GCAATG 2 cut(s) 119, 898
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 1174
BseDI CCNNGG 3 cut(s) 610, 807, 1185
BseGI GGATG 2 cut(s) 30, 819
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 2 cut(s) 21, 706
BseMI GCAATG 2 cut(s) 119, 898
BseNI ACTGG 2 cut(s) 134, 567
BseRI GAGGAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 565
BsiSI CCGG 1 cut(s) 1175
BslI CCNNNNNNNGG 2 cut(s) 21, 706
BsmAI GTCTC 3 cut(s) 306, 666, 736
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 666
Bsp13I TCCGGA 1 cut(s) 1174
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 343, 803
BspANI GGCC 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 1174
BspLI GGNNCC 3 cut(s) 356, 567, 805
BspMAI CTGCAG 1 cut(s) 1145
BspPI GGATC 2 cut(s) 798, 811
BspT107I GGYRCC 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 119, 898
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 2 cut(s) 134, 567
BssECI CCNNGG 3 cut(s) 610, 807, 1185
BssMI GATC 2 cut(s) 343, 803
BssT1I CCWWGG 2 cut(s) 610, 807
Bst4CI ACNGT 5 cut(s) 105, 208, 409, 435, 1069
Bst6I CTCTTC 2 cut(s) 325, 591
BstAFI CTTAAG 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 191, 239
BstDEI CTNAG 2 cut(s) 20, 1105
BstEII GGTNACC 1 cut(s) 271
BstF5I GGATG 2 cut(s) 30, 819
BstKTI GATC 2 cut(s) 346, 806
BstMAI GTCTC 3 cut(s) 306, 666, 736
BstMBI GATC 2 cut(s) 343, 803
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 431, 1141
BstV2I GAAGAC 2 cut(s) 907, 1014
BstX2I RGATCY 1 cut(s) 803
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 1 cut(s) 803
BsuRI GGCC 1 cut(s) 453
BtsCI GGATG 2 cut(s) 30, 819
BtsI GCAGTG 2 cut(s) 429, 945
BtsIMutI CAGTG 4 cut(s) 414, 429, 560, 945
Cac8I GCNNGC 2 cut(s) 191, 239
Cfr13I GGNCC 5 cut(s) 170, 354, 451, 521, 896
Csp6I GTAC 2 cut(s) 106, 436
CviAII CATG 5 cut(s) 109, 146, 494, 527, 701
CviJI RGCY 8 cut(s) 189, 214, 384, 453, 986, 1035, 1109, 1129
CviKI_1 RGCY 8 cut(s) 189, 214, 384, 453, 986, 1035, 1109, 1129
CviQI GTAC 2 cut(s) 106, 436
DdeI CTNAG 2 cut(s) 20, 1105
DpnI GATC 2 cut(s) 345, 805
DpnII GATC 2 cut(s) 343, 803
DraI TTTAAA 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 325, 591
EarI CTCTTC 2 cut(s) 325, 591
Eco130I CCWWGG 2 cut(s) 610, 807
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 4 cut(s) 170, 354, 521, 896
Eco57I CTGAAG 3 cut(s) 306, 521, 647
Eco91I GGTNACC 1 cut(s) 271
EcoO109I RGGNCCY 2 cut(s) 354, 451
EcoO65I GGTNACC 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 610, 807
ErhI CCWWGG 2 cut(s) 610, 807
FaeI CATG 5 cut(s) 112, 149, 497, 530, 704
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FatI CATG 5 cut(s) 108, 145, 493, 526, 700
FauNDI CATATG 2 cut(s) 887, 1236
FokI GGATG 2 cut(s) 37, 826
FspBI CTAG 4 cut(s) 309, 869, 1032, 1056
HaeIII GGCC 1 cut(s) 453
HapII CCGG 1 cut(s) 1175
Hin1II CATG 5 cut(s) 112, 149, 497, 530, 704
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 7 cut(s) 361, 505, 781, 818, 865, 874, 1021
HpaII CCGG 1 cut(s) 1175
HphI GGTGA 3 cut(s) 656, 1030, 1174
Hpy166II GTNNAC 2 cut(s) 524, 1072
Hpy188I TCNGA 5 cut(s) 226, 325, 823, 1189, 1224
Hpy188III TCNNGA 7 cut(s) 81, 173, 309, 835, 869, 1091, 1175
Hpy8I GTNNAC 2 cut(s) 524, 1072
HpyAV CCTTC 2 cut(s) 480, 622
HpyCH4III ACNGT 5 cut(s) 105, 208, 409, 435, 1069
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 2 cut(s) 20, 1105
Hsp92II CATG 5 cut(s) 112, 149, 497, 530, 704
Kpn2I TCCGGA 1 cut(s) 1174
Kzo9I GATC 2 cut(s) 343, 803
LmnI GCTCC 1 cut(s) 907
LweI GCATC 3 cut(s) 15, 217, 613
MaeI CTAG 4 cut(s) 309, 869, 1032, 1056
MaeIII GTNAC 5 cut(s) 44, 271, 409, 489, 1018
MalI GATC 2 cut(s) 345, 805
MboI GATC 2 cut(s) 343, 803
MflI RGATCY 1 cut(s) 803
MlyI GAGTC 3 cut(s) 355, 827, 1015
MnlI CCTC 3 cut(s) 143, 476, 1195
MroI TCCGGA 1 cut(s) 1174
MseI TTAA 4 cut(s) 35, 200, 366, 927
MslI CAYNNNNRTG 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 1 cut(s) 1175
Mva1269I GAATGC 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 908
NdeI CATATG 2 cut(s) 887, 1236
NdeII GATC 2 cut(s) 343, 803
NlaIII CATG 5 cut(s) 112, 149, 497, 530, 704
NlaIV GGNNCC 3 cut(s) 356, 567, 805
NmuCI GTSAC 2 cut(s) 409, 1018
NspI RCATGY 1 cut(s) 112
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 4 cut(s) 505, 781, 865, 874
PflMI CCANNNNNTGG 1 cut(s) 706
PleI GAGTC 3 cut(s) 355, 826, 1015
PpsI GAGTC 3 cut(s) 355, 826, 1015
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
PspEI GGTNACC 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 356, 567, 805
PspPI GGNCC 5 cut(s) 170, 354, 451, 521, 896
PspPPI RGGWCCY 1 cut(s) 354
PstI CTGCAG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 803
RsaI GTAC 2 cut(s) 107, 437
RsaNI GTAC 2 cut(s) 106, 436
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 4 cut(s) 35, 200, 366, 927
Sau3AI GATC 2 cut(s) 343, 803
Sau96I GGNCC 5 cut(s) 170, 354, 451, 521, 896
SchI GAGTC 3 cut(s) 355, 827, 1015
SfaNI GCATC 3 cut(s) 15, 217, 613
SfcI CTRYAG 2 cut(s) 431, 1141
SinI GGWCC 4 cut(s) 170, 354, 521, 896
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 34, 674
SmoI CTYRAG 2 cut(s) 34, 674
SspI AATATT 2 cut(s) 52, 695
SspMI CTAG 4 cut(s) 309, 869, 1032, 1056
StyI CCWWGG 2 cut(s) 610, 807
TaaI ACNGT 5 cut(s) 105, 208, 409, 435, 1069
TaqI TCGA 2 cut(s) 1050, 1242
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 4 cut(s) 505, 781, 865, 874
Tru1I TTAA 4 cut(s) 35, 200, 366, 927
Tru9I TTAA 4 cut(s) 35, 200, 366, 927
TscAI CASTG 4 cut(s) 414, 429, 567, 945
TseFI GTSAC 2 cut(s) 409, 1018
Tsp45I GTSAC 2 cut(s) 409, 1018
TspDTI ATGAA 2 cut(s) 134, 794
TspRI CASTG 4 cut(s) 414, 429, 567, 945
Van91I CCANNNNNTGG 1 cut(s) 706
Vha464I CTTAAG 1 cut(s) 34
VpaK11BI GGWCC 4 cut(s) 170, 354, 521, 896
XapI RAATTY 3 cut(s) 7, 141, 730
XbaI TCTAGA 2 cut(s) 308, 868
XceI RCATGY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XspI CTAG 4 cut(s) 309, 869, 1032, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.