Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83461731 .. 83462339

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTTTAAACTAATATATGCCTTATGCTTTCTACTTCTACTTCTACTACTACCATTTCCCACCCCTGCTCAAACTTACCATAATATATCGCTTAAATCGTCCCTTGTTGCAGGGGAAGATAGCAGTCCTTGGGCCTCACCATCCGGCGAATTTGCTTTTGGTTTTCAAAAAATTGGCAACAAGGGCTTCATACTAGCCATCTGGTTTGACAAAATACCTGAAAAAACTATTGTGTGGTCAGCCAATGAAAACAACTTGGCGGAAGAAGGATCAACAGTTGAACTCAACACATTTGGACAGTTAGTGCTCAATTATGCCTCAGGAGAACAAAGGTTGCTATCTGACCATCACTCAACTCGAGGTATTAGAGTTGCCTATGCAGCCATGCTTGACTCAGGAAATTTTGTGCTGGCTGACAAAGAGTCAAACAATTTGTGGGAGAGTTTTGATCAACCAACTGATACAATCTTACCTACACAGACTCTAAGTATAGGTAGTGTTCTCTTTGCTCCCTATACTGCTACGAATTACTCAAATGGAAGATTCCAGTTAAAACTAGAGTCTAATGGAAATGTTGTTCTATATATACAACAAACTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

202

Amino Acids

22.38

Weight (kDa)

4.98

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	77 - 165	1.8e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	152, 403
AgsI	TTSAA	2 cut(s)	170, 284
AhdI	GACNNNNNGTC	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	152, 403
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	360
AxyI	CCTNAGG	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	151, 209, 357
BclI	TGATCA	1 cut(s)	451
BfaI	CTAG	2 cut(s)	197, 560
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	336, 411
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	272, 451
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	335, 410
BspPI	GGATC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	272, 451
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	280, 303
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	322, 397, 488
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	275, 454
BstMBI	GATC	2 cut(s)	272, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 383
BstV1I	GCAGC	1 cut(s)	395
Bsu36I	CCTNAGG	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	7 cut(s)	5, 137, 189, 200, 245, 386, 416
CviKI_1	RGCY	7 cut(s)	5, 137, 189, 200, 245, 386, 416
DdeI	CTNAG	3 cut(s)	322, 397, 488
DpnI	GATC	2 cut(s)	274, 453
DpnII	GATC	2 cut(s)	272, 451
DraI	TTTAAA	1 cut(s)	10
DriI	GACNNNNNGTC	1 cut(s)	424
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	391
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	197, 560
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	5 cut(s)	395, 425, 484, 546, 563
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	324, 399
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	280, 303
HpyCH4V	TGCA	2 cut(s)	113, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 383
HpyF3I	CTNAG	3 cut(s)	322, 397, 488
Hsp92II	CATG	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	272, 451
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	9 cut(s)	81, 99, 160, 190, 234, 309, 384, 398, 563
Lsp1109I	GCAGC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	197, 560
MalI	GATC	2 cut(s)	274, 453
MboI	GATC	2 cut(s)	272, 451
MboII	GAAGA	3 cut(s)	131, 278, 555
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	6 cut(s)	152, 174, 313, 403, 433, 529
MlyI	GAGTC	4 cut(s)	389, 434, 478, 572
MnlI	CCTC	3 cut(s)	148, 331, 356
MseI	TTAA	3 cut(s)	9, 96, 554
MspI	CCGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	186, 383
NdeII	GATC	2 cut(s)	272, 451
NlaIII	CATG	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	4 cut(s)	389, 433, 478, 571
PpsI	GAGTC	4 cut(s)	389, 433, 478, 571
PspPI	GGNCC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	9, 96, 554
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	272, 451
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	4 cut(s)	389, 434, 478, 572
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	5 cut(s)	223, 338, 367, 478, 499
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	6 cut(s)	152, 174, 313, 403, 433, 529
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	197, 560
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	280, 303
TaqI	TCGA	1 cut(s)	361
TasI	AATT	6 cut(s)	152, 174, 313, 403, 433, 529
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	3 cut(s)	9, 96, 554
Tru9I	TTAA	3 cut(s)	9, 96, 554
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	181, 264
XapI	RAATTY	2 cut(s)	152, 403
XhoI	CTCGAG	1 cut(s)	360
XspI	CTAG	2 cut(s)	197, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.