Rh5DG543500

Bulb-type mannose-specific lectin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
83614769 .. 83618275
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG543500.1

Sequence Viewer

Length: 2478 bp
ATGGTCTATATAATGCAAATGATGATTGCATTCTGTATATCACCATTGACACTTCCATACTTTCATACCATGGCTTCTATACTACCATATCCTTTTTACCTTCTTCTTCTTCTTCTTCTTCTACAGCTACTCCCAATTTCCACAATTGCTCAAACTTATAAGAACATATCCTTGGGCTCATCACTCACTGCACTTGACAATAACTCTTTCTGGGCCTCGCCATCGGGGGAATTCGCTTTCGGTTTCCAAGAAGTTAGTAGTAATGGCTTCTTACTAGCCATTTGGTTTAACAAAATAGCTGAAAGGACTATTGTATGGTCAGCCAATGGCAACAATCTAGTGCAAAAAGGATCGAAAGTCGTACTTAATGCAGATGGCCAGCTTTTACTCAATGATGTTGTGATAAGCACGCAGATACGGCATGGCGATTCAGCTCAGATGGGAGTAGCCTATGCAGCCATGCTCGACACAGGAAATTTCGTGTTGGCTAATCAAAATTCAACGTATTTGTGGCAGAGTTTTACTGGGCCAACAAATACACTTCTACCCACGCAGACTCTAAATCAAGGCACCATCCTCTTTGCTCCCACAACAGCAACAAATTACTCCAAAGGAAGATTCATGTTTACACTACAAGATGATGGAAATCTCCTGCTTTACACAACACATTACCCATCGGATTCTGCTAATTTTGCTTATTGGTCAACACAAAGTATGGGGATCGGATATCAAGTCATCTTCAACCTGCAGACTGGAGCTATTTACCTTGCTAGCAAGAACGGAAGCATACTTACTGCTGTACTAAACAATACAGCTTCAGCCACGGAGTTCTACCACAGAGTAACTCTTGACTATGATGGAGTGTTGAGGTACTACGTCTACCCTAAAAGCACCAACACAAGTGGACACTGGATCACGGCTTGGTCCCCTTTGTCCTTCATACCTTCAGACATCTGTGTGAGGATTACAGAAGATAAAGGCGGTGGTGCATGTGGTTTCAACGGCTTATGTCAACATGACCAAGGGCCAAGTTGCCACTGCCCAGATGGATACACGTTCATTGATCCTAATGATGAGCTCAGAGGATGCAAACAGACCTTCGTGCCACAAAGCTGTGATGGGGCCTCACCGGAGACTGATCTTTTCTATTTTGAAGAGATGCAAAACACAGATTGGCCTGAATCTGATTATGAGATGTTTACGCCGGTAACTGAGGATTGGTGCAGGCAGACTTGCCTAGCTGATTGTTTCTGTGCAGTTGCTATTTTCAGAAACGGGGACTGCTGGTTCAAGTCAATACCTCTTCGCAACGGAAGGATTGACCCCAGTAATGGTGGAAAAGCTCTAATCAAAATAAGGAGAGGGAATTCTACTTTGAAACCTGAACAAGCACATTCAAGAAGGAGATATCATTCAACTATAATCCTCATCGGATCAGTGCTCCTGAGTAGCTCTGGGTTTCTGAACTGTCTCTTAATGTTAATAACCTACAGGGTTGTTTCTGGTTTCTATTTTAAGAAAGGAAAGGTGATTCAACCACACTCAGTCATACCAGGGATGAACCTAATATGTTTCACTTACAAGGAGCTAAATAAGGCTACGAATGGATTCAAGGAAGAACTTGGTCGTGGTGCTTTTGCAACAGTTTTTAGAGGAGATTTGGCGTCTGATAATGGGAGATGTGTTGCTGTCAAAAGATTGAACACTATGGTAAAAGAAAGTGAGTTGGAGTTCAAAGCTGAATTGAGTGCAATTGGCAGAACAAATCACAGAAACTTGGTACAGCTAATAGGATTCTGCAACGAGGGGGAGCACCGAATTCTTGTCTATGAGTTCATGAGCAACGGCTCTCTAGCAAGCTTCCTATTTGGAGAGTCAAGGCCGAGCTGGCACCAAAGAAGGCAAATTGCTTTGGGTACAGCAAGAGGGCTCTTGTATTTGCACGAGGAGTGCAGCAGCCAAATCATACATTGTGACATTAAGCCTCAAAATGTTCTCCTAGACGACTCTTTCATGGCAAGGATTTCTGACTTTGGATTAGCCAAGCTGTTGAAGACGGACCAGACTCGAACTACTACTGGAATCAGGGGAACTAGAGGGTATGTGGCTCCTGAATGGTTCAAAAATATGCCTATCACAACCAAGGTTGATGTTTACAGCTATGGCATTTTGTTACTGGAGATTATTTGCTTAAGGAAGTATTTTGAGGCAGAGGCAGAGGATGAAGATCAAATGATACTAGCTGACTGGGCATATGACTGCTACGCGCAAAAGAAATTGCGTCTACTATTTGACAATGATGATGAGGCAGTGCATGATATCAAGAATATGGAGAAGTACTTGATGATTGCATTGTGGTGCATCCAGGAGGATCCGTCACTGAGACCCACAACGAAGAAACTCACATTGATGCTTGAAGGAACTGTTGAAGTCTCAATTCCACCAGATCCATCCTCATTTGCAAGTTCAATATTGTAA

Protein Analysis

825

Amino Acids

92.52

Weight (kDa)

5.94

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 103 - 188 9.2e-14 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 537 - 802 1.7e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 538 - 801 1.8e-50 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 753
AccB1I GGYRCC 2 cut(s) 569, 1890
AccI GTMKAC 2 cut(s) 879, 2284
AccII CGCG 1 cut(s) 2267
AciI CCGC 1 cut(s) 981
AclWI GGATC 8 cut(s) 358, 728, 920, 1058, 1441, 2366, 2379, 2441
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 5 cut(s) 230, 475, 496, 1366, 1818
AcuI CTGAAG 2 cut(s) 801, 930
AcyI GRCGYC 1 cut(s) 1664
AfaI GTAC 6 cut(s) 363, 801, 872, 1782, 1918, 2339
AfiI CCNNNNNNNGG 1 cut(s) 1331
AflII CTTAAG 1 cut(s) 2191
AflIII ACRYGT 1 cut(s) 1053
AjnI CCWGG 2 cut(s) 1552, 2364
AjuI GAANNNNNNNTTGG 4 cut(s) 155, 187, 602, 634
AloI GAACNNNNNNTCC 2 cut(s) 1271, 1303
Alw21I GWGCWC 3 cut(s) 1080, 1443, 1815
Alw26I GTCTC 4 cut(s) 1127, 1475, 2377, 2437
AlwI GGATC 8 cut(s) 358, 728, 920, 1058, 1441, 2366, 2379, 2441
AoxI GGCC 7 cut(s) 213, 376, 527, 1025, 1122, 1175, 1880
ApeKI GCWGC 3 cut(s) 455, 1953, 1956
ApoI RAATTY 5 cut(s) 230, 475, 496, 1366, 1818
Asp700I GAANNNNTTC 1 cut(s) 1607
AspLEI GCGC 1 cut(s) 2269
AspS9I GGNCC 6 cut(s) 213, 527, 924, 1025, 1122, 2059
AsuHPI GGTGA 3 cut(s) 33, 1119, 1540
AsuNHI GCTAGC 1 cut(s) 770
AvaII GGWCC 2 cut(s) 924, 2059
BalI TGGCCA 1 cut(s) 378
BamHI GGATCC 1 cut(s) 2371
BanI GGYRCC 2 cut(s) 569, 1890
BanII GRGCYC 3 cut(s) 179, 1080, 1932
BarI GAAGNNNNNNTAC 2 cut(s) 775, 807
BauI CACGAG 1 cut(s) 1943
BbsI GAAGAC 1 cut(s) 2060
Bbv12I GWGCWC 3 cut(s) 1080, 1443, 1815
BbvI GCAGC 3 cut(s) 467, 1965, 1968
BceAI ACGGC 4 cut(s) 434, 933, 1018, 1861
BciT130I CCWGG 2 cut(s) 1554, 2366
BciVI GTATCC 1 cut(s) 1043
BcoDI GTCTC 4 cut(s) 1127, 1475, 2377, 2437
BfaI CTAG 8 cut(s) 275, 338, 771, 1238, 1853, 2000, 2094, 2240
BfmI CTRYAG 3 cut(s) 122, 746, 1489
BfrI CTTAAG 1 cut(s) 2191
BfuAI ACCTGC 1 cut(s) 753
BfuI GTATCC 1 cut(s) 1043
BglI GCCNNNNNGGC 1 cut(s) 1888
BisI GCNGC 3 cut(s) 456, 1954, 1957
BlsI GCNGC 3 cut(s) 457, 1955, 1958
BmcAI AGTACT 1 cut(s) 2339
Bme1390I CCNGG 2 cut(s) 1554, 2366
Bme18I GGWCC 2 cut(s) 924, 2059
BmgT120I GGNCC 6 cut(s) 213, 527, 924, 1025, 1122, 2059
BmiI GGNNCC 6 cut(s) 571, 926, 1123, 1892, 2109, 2373
BmrFI CCNGG 2 cut(s) 1554, 2366
BmrI ACTGGG 3 cut(s) 534, 1320, 2257
BmsI GCATC 4 cut(s) 1076, 1149, 2370, 2400
BmtI GCTAGC 1 cut(s) 774
BmuI ACTGGG 3 cut(s) 534, 1320, 2257
BpiI GAAGAC 1 cut(s) 2060
BpmI CTGGAG 2 cut(s) 774, 2198
BsaBI GATNNNNATC 2 cut(s) 645, 2226
BsaHI GRCGYC 1 cut(s) 1664
BsaI GGTCTC 1 cut(s) 2377
BsaJI CCNNGG 6 cut(s) 69, 171, 822, 1021, 1553, 2142
BsaWI WCCGGW 1 cut(s) 1129
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 2360, 2390
Bsc4I CCNNNNNNNGG 1 cut(s) 1331
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 7 cut(s) 529, 757, 914, 1326, 2083, 2181, 2252
Bse8I GATNNNNATC 2 cut(s) 645, 2226
BseBI CCWGG 2 cut(s) 1554, 2366
BseDI CCNNGG 6 cut(s) 69, 171, 822, 1021, 1553, 2142
BseGI GGATG 6 cut(s) 573, 1091, 1563, 2227, 2361, 2450
BseJI GATNNNNATC 2 cut(s) 645, 2226
BseLI CCNNNNNNNGG 1 cut(s) 1331
BseMII CTCAG 6 cut(s) 449, 1093, 1203, 1436, 1557, 2372
BseNI ACTGG 7 cut(s) 529, 757, 914, 1326, 2083, 2181, 2252
BseRI GAGGAG 2 cut(s) 1668, 1961
BseXI GCAGC 3 cut(s) 467, 1965, 1968
BsgI GTGCAG 4 cut(s) 174, 1243, 1275, 1972
Bsh1236I CGCG 1 cut(s) 2267
BshFI GGCC 7 cut(s) 215, 378, 529, 1027, 1124, 1177, 1882
BshNI GGYRCC 2 cut(s) 569, 1890
BsiHKAI GWGCWC 3 cut(s) 1080, 1443, 1815
BsiSI CCGG 2 cut(s) 1130, 1205
BslFI GGGAC 2 cut(s) 910, 1292
BslI CCNNNNNNNGG 1 cut(s) 1331
BsmAI GTCTC 4 cut(s) 1127, 1475, 2377, 2437
BsmFI GGGAC 2 cut(s) 910, 1292
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 7 cut(s) 215, 378, 529, 1027, 1124, 1177, 1882
Bso31I GGTCTC 1 cut(s) 2377
Bsp1286I GDGCHC 5 cut(s) 179, 1080, 1443, 1815, 1932
Bsp143I GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 1 cut(s) 981
BspANI GGCC 7 cut(s) 215, 378, 529, 1027, 1124, 1177, 1882
BspCNI CTCAG 6 cut(s) 448, 1092, 1204, 1437, 1556, 2373
BspFNI CGCG 1 cut(s) 2267
BspHI TCATGA 1 cut(s) 1836
BspLI GGNNCC 6 cut(s) 571, 926, 1123, 1892, 2109, 2373
BspMAI CTGCAG 1 cut(s) 750
BspMI ACCTGC 1 cut(s) 753
BspOI GCTAGC 1 cut(s) 774
BspPI GGATC 8 cut(s) 358, 728, 920, 1058, 1441, 2366, 2379, 2441
BspT107I GGYRCC 2 cut(s) 569, 1890
BspTI CTTAAG 1 cut(s) 2191
BspTNI GGTCTC 1 cut(s) 2377
BsrFI RCCGGY 1 cut(s) 1204
BsrI ACTGG 7 cut(s) 529, 757, 914, 1326, 2083, 2181, 2252
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 6 cut(s) 69, 171, 822, 1021, 1553, 2142
BssMI GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
BssNI GRCGYC 1 cut(s) 1664
BssSI CACGAG 1 cut(s) 1943
BssT1I CCWWGG 4 cut(s) 69, 171, 1021, 2142
Bst2BI CACGAG 1 cut(s) 1943
Bst2UI CCWGG 2 cut(s) 1554, 2366
Bst4CI ACNGT 3 cut(s) 1469, 1645, 2425
Bst6I CTCTTC 2 cut(s) 1149, 1308
BstACI GRCGYC 1 cut(s) 1664
BstAFI CTTAAG 1 cut(s) 2191
BstC8I GCNNGC 6 cut(s) 380, 410, 772, 1226, 1858, 1889
BstDEI CTNAG 6 cut(s) 435, 1079, 1212, 1445, 1543, 2381
BstDSI CCRYGG 2 cut(s) 69, 822
BstF5I GGATG 6 cut(s) 573, 1091, 1563, 2227, 2361, 2450
BstFNI CGCG 1 cut(s) 2267
BstHHI GCGC 1 cut(s) 2269
BstKTI GATC 9 cut(s) 353, 723, 915, 1066, 1141, 1436, 2230, 2374, 2449
BstMAI GTCTC 4 cut(s) 1127, 1475, 2377, 2437
BstMBI GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
BstMWI GCNNNNNNNGC 5 cut(s) 418, 455, 692, 1888, 2249
BstNI CCWGG 2 cut(s) 1554, 2366
BstNSI RCATGY 1 cut(s) 993
BstSCI CCNGG 2 cut(s) 1552, 2364
BstSFI CTRYAG 3 cut(s) 122, 746, 1489
BstUI CGCG 1 cut(s) 2267
BstV1I GCAGC 3 cut(s) 467, 1965, 1968
BstV2I GAAGAC 1 cut(s) 2060
BstX2I RGATCY 2 cut(s) 2371, 2446
BstYI RGATCY 2 cut(s) 2371, 2446
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 7 cut(s) 215, 378, 529, 1027, 1124, 1177, 1882
BtgI CCRYGG 2 cut(s) 69, 822
BtsCI GGATG 6 cut(s) 573, 1091, 1563, 2227, 2361, 2450
BtsI GCAGTG 3 cut(s) 186, 1036, 2316
BtsIMutI CAGTG 6 cut(s) 186, 907, 1036, 1443, 2316, 2378
BveI ACCTGC 1 cut(s) 753
Cac8I GCNNGC 6 cut(s) 380, 410, 772, 1226, 1858, 1889
CciI TCATGA 1 cut(s) 1836
CfoI GCGC 1 cut(s) 2269
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 6 cut(s) 213, 527, 924, 1025, 1122, 2059
CseI GACGC 2 cut(s) 1653, 2270
Csp6I GTAC 6 cut(s) 362, 800, 871, 1781, 1917, 2338
CspCI CAANNNNNGTGG 2 cut(s) 883, 918
CviAII CATG 9 cut(s) 70, 422, 460, 622, 990, 1016, 1837, 2014, 2315
CviQI GTAC 6 cut(s) 362, 800, 871, 1781, 1917, 2338
DdeI CTNAG 6 cut(s) 435, 1079, 1212, 1445, 1543, 2381
DpnI GATC 9 cut(s) 352, 722, 914, 1065, 1140, 1435, 2229, 2373, 2448
DpnII GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 1149, 1308
EarI CTCTTC 2 cut(s) 1149, 1308
Ecl136II GAGCTC 1 cut(s) 1078
Eco130I CCWWGG 4 cut(s) 69, 171, 1021, 2142
Eco24I GRGCYC 3 cut(s) 179, 1080, 1932
Eco31I GGTCTC 1 cut(s) 2377
Eco32I GATATC 3 cut(s) 728, 1409, 2320
Eco47I GGWCC 2 cut(s) 924, 2059
Eco53kI GAGCTC 1 cut(s) 1078
Eco57I CTGAAG 2 cut(s) 801, 930
EcoICRI GAGCTC 1 cut(s) 1078
EcoO109I RGGNCCY 1 cut(s) 1122
EcoRI GAATTC 3 cut(s) 230, 1366, 1818
EcoRII CCWGG 2 cut(s) 1552, 2364
EcoRV GATATC 3 cut(s) 728, 1409, 2320
EcoT14I CCWWGG 4 cut(s) 69, 171, 1021, 2142
EcoT38I GRGCYC 3 cut(s) 179, 1080, 1932
ErhI CCWWGG 4 cut(s) 69, 171, 1021, 2142
FaeI CATG 9 cut(s) 73, 425, 463, 625, 993, 1019, 1840, 2017, 2318
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 2 cut(s) 910, 1292
FatI CATG 9 cut(s) 69, 421, 459, 621, 989, 1015, 1836, 2013, 2314
FauNDI CATATG 1 cut(s) 2254
FblI GTMKAC 2 cut(s) 879, 2284
Fnu4HI GCNGC 3 cut(s) 456, 1954, 1957
FokI GGATG 6 cut(s) 560, 1098, 1570, 2234, 2348, 2437
FriOI GRGCYC 3 cut(s) 179, 1080, 1932
Fsp4HI GCNGC 3 cut(s) 456, 1954, 1957
FspBI CTAG 8 cut(s) 275, 338, 771, 1238, 1853, 2000, 2094, 2240
GlaI GCGC 1 cut(s) 2268
GluI GCNGC 3 cut(s) 456, 1954, 1957
GsuI CTGGAG 2 cut(s) 774, 2198
HaeIII GGCC 7 cut(s) 215, 378, 529, 1027, 1124, 1177, 1882
HapII CCGG 2 cut(s) 1130, 1205
HgaI GACGC 2 cut(s) 1653, 2270
HhaI GCGC 1 cut(s) 2269
Hin1I GRCGYC 1 cut(s) 1664
Hin1II CATG 9 cut(s) 73, 425, 463, 625, 993, 1019, 1840, 2017, 2318
Hin6I GCGC 1 cut(s) 2267
HinP1I GCGC 1 cut(s) 2267
HincII GTYRAC 2 cut(s) 705, 1013
HindII GTYRAC 2 cut(s) 705, 1013
HindIII AAGCTT 1 cut(s) 1858
HpaII CCGG 2 cut(s) 1130, 1205
HphI GGTGA 3 cut(s) 33, 1119, 1540
Hpy166II GTNNAC 8 cut(s) 627, 705, 880, 905, 1013, 1200, 2155, 2285
Hpy188III TCNNGA 6 cut(s) 848, 1398, 1444, 1837, 2111, 2323
Hpy8I GTNNAC 8 cut(s) 627, 705, 880, 905, 1013, 1200, 2155, 2285
HpyAV CCTTC 8 cut(s) 110, 946, 954, 1108, 1308, 1395, 1893, 2411
HpyCH4III ACNGT 3 cut(s) 1469, 1645, 2425
HpyCH4IV ACGT 3 cut(s) 503, 876, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 418, 455, 692, 1888, 2249
HpyF3I CTNAG 6 cut(s) 435, 1079, 1212, 1445, 1543, 2381
HpySE526I ACGT 3 cut(s) 503, 876, 1055
Hsp92I GRCGYC 1 cut(s) 1664
Hsp92II CATG 9 cut(s) 73, 425, 463, 625, 993, 1019, 1840, 2017, 2318
HspAI GCGC 1 cut(s) 2267
Kzo9I GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
LmnI GCTCC 6 cut(s) 589, 755, 1446, 1585, 1810, 2113
Lsp1109I GCAGC 3 cut(s) 467, 1965, 1968
LweI GCATC 4 cut(s) 1076, 1149, 2370, 2400
MaeI CTAG 8 cut(s) 275, 338, 771, 1238, 1853, 2000, 2094, 2240
MaeII ACGT 3 cut(s) 503, 876, 1055
MaeIII GTNAC 5 cut(s) 841, 1207, 1973, 2172, 2376
MalI GATC 9 cut(s) 352, 722, 914, 1065, 1140, 1435, 2229, 2373, 2448
MboI GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
MfeI CAATTG 2 cut(s) 144, 1752
MflI RGATCY 2 cut(s) 2371, 2446
MhlI GDGCHC 5 cut(s) 179, 1080, 1443, 1815, 1932
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 4 cut(s) 550, 1883, 2000, 2059
MmeI TCCRAC 1 cut(s) 1707
Mox20I TGGCCA 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 1607
MscI TGGCCA 1 cut(s) 378
MseI TTAA 7 cut(s) 288, 366, 1475, 1481, 1515, 1980, 2192
MslI CAYNNNNRTG 3 cut(s) 956, 2356, 2408
Msp20I TGGCCA 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 2191
MspI CCGG 2 cut(s) 1130, 1205
MspR9I CCNGG 2 cut(s) 1554, 2366
MunI CAATTG 2 cut(s) 144, 1752
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 1554, 2366
MvnI CGCG 1 cut(s) 2267
MwoI GCNNNNNNNGC 5 cut(s) 418, 455, 692, 1888, 2249
NcoI CCATGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 2254
NdeII GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
NheI GCTAGC 1 cut(s) 770
NlaIII CATG 9 cut(s) 73, 425, 463, 625, 993, 1019, 1840, 2017, 2318
NlaIV GGNNCC 6 cut(s) 571, 926, 1123, 1892, 2109, 2373
NmeAIII GCCGAG 1 cut(s) 1908
NmuCI GTSAC 2 cut(s) 1973, 2376
NspI RCATGY 1 cut(s) 993
PagI TCATGA 1 cut(s) 1836
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 1607
PfeI GAWTC 8 cut(s) 428, 618, 680, 1181, 1531, 1608, 1794, 2082
PfoI TCCNGGA 1 cut(s) 2364
PkrI GCNGC 3 cut(s) 457, 1955, 1958
PleI GAGTC 4 cut(s) 550, 1882, 2000, 2059
PpsI GAGTC 4 cut(s) 550, 1882, 2000, 2059
PsiI TTATAA 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 1080
Psp6I CCWGG 2 cut(s) 1552, 2364
PspGI CCWGG 2 cut(s) 1552, 2364
PspN4I GGNNCC 6 cut(s) 571, 926, 1123, 1892, 2109, 2373
PspPI GGNCC 6 cut(s) 213, 527, 924, 1025, 1122, 2059
PstI CTGCAG 1 cut(s) 750
PsuI RGATCY 2 cut(s) 2371, 2446
RsaI GTAC 6 cut(s) 363, 801, 872, 1782, 1918, 2339
RsaNI GTAC 6 cut(s) 362, 800, 871, 1781, 1917, 2338
RseI CAYNNNNRTG 3 cut(s) 956, 2356, 2408
SacI GAGCTC 1 cut(s) 1080
SaqAI TTAA 7 cut(s) 288, 366, 1475, 1481, 1515, 1980, 2192
SatI GCNGC 3 cut(s) 456, 1954, 1957
Sau3AI GATC 9 cut(s) 350, 720, 912, 1063, 1138, 1433, 2227, 2371, 2446
Sau96I GGNCC 6 cut(s) 213, 527, 924, 1025, 1122, 2059
ScaI AGTACT 1 cut(s) 2339
SchI GAGTC 4 cut(s) 550, 1883, 2000, 2059
ScrFI CCNGG 2 cut(s) 1554, 2366
SduI GDGCHC 5 cut(s) 179, 1080, 1443, 1815, 1932
SfaNI GCATC 4 cut(s) 1076, 1149, 2370, 2400
SfcI CTRYAG 3 cut(s) 122, 746, 1489
SinI GGWCC 2 cut(s) 924, 2059
SmiMI CAYNNNNRTG 3 cut(s) 956, 2356, 2408
SmlI CTYRAG 1 cut(s) 2191
SmoI CTYRAG 1 cut(s) 2191
SsiI CCGC 1 cut(s) 981
SspI AATATT 1 cut(s) 2472
SspMI CTAG 8 cut(s) 275, 338, 771, 1238, 1853, 2000, 2094, 2240
SstI GAGCTC 1 cut(s) 1080
StyD4I CCNGG 2 cut(s) 1552, 2364
StyI CCWWGG 4 cut(s) 69, 171, 1021, 2142
TaaI ACNGT 3 cut(s) 1469, 1645, 2425
TaiI ACGT 3 cut(s) 506, 879, 1058
TaqI TCGA 3 cut(s) 353, 465, 2068
TatI WGTACW 2 cut(s) 799, 2337
TfiI GAWTC 8 cut(s) 428, 618, 680, 1181, 1531, 1608, 1794, 2082
Tru1I TTAA 7 cut(s) 288, 366, 1475, 1481, 1515, 1980, 2192
Tru9I TTAA 7 cut(s) 288, 366, 1475, 1481, 1515, 1980, 2192
TscAI CASTG 6 cut(s) 193, 914, 1043, 1443, 2316, 2385
TseFI GTSAC 2 cut(s) 1973, 2376
TseI GCWGC 3 cut(s) 455, 1953, 1956
Tsp45I GTSAC 2 cut(s) 1973, 2376
TspDTI ATGAA 8 cut(s) 53, 610, 928, 1048, 1574, 1825, 2002, 2238
TspGWI ACGGA 5 cut(s) 795, 839, 1326, 2072, 2364
TspRI CASTG 6 cut(s) 193, 914, 1043, 1443, 2316, 2385
Vha464I CTTAAG 1 cut(s) 2191
VpaK11BI GGWCC 2 cut(s) 924, 2059
XapI RAATTY 5 cut(s) 230, 475, 496, 1366, 1818
XceI RCATGY 1 cut(s) 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XmiI GTMKAC 2 cut(s) 879, 2284
XmnI GAANNNNTTC 1 cut(s) 1607
XspI CTAG 8 cut(s) 275, 338, 771, 1238, 1853, 2000, 2094, 2240
ZrmI AGTACT 1 cut(s) 2339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.