RchiOBHm_Chr5g0079081

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84819487 .. 84821359
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35356

Sequence Viewer

Length: 1422 bp
ATGAGAATGAACAAAAGAGATAGAAGATTGTTGATTATCATTATAAAATTGTGGACAAGTACTTCGTCTTTGATAGATTCCCAAAGTTGTGATAAAGCCTCATCAGAAACAGAACACTTTGAATTTCAAGAGCTTCAATTCACTGATTGGCCTGGTGGAGATTATGAGCATTTCCAGCCATTTAATAAGGAACAGTGCAAGCAAAGCTGCTTAGCCGATTGTTTCTGTGCCATTGCCATTTTCAATGAAGTAAATAGTGATTGTTGGAAGAAGGGAATCCCTCTTTTTAACGGGAGGATAAACAAAGATGTTGGAGTAGCTCTGGTGAAAATAAGGAAAGACACTTTGACACCAGCAAAAGAAAAAGACAGTCTAACTCTGCTCATCATCGCAGCAGTGATCATTTTAATATCAACCAACTTGGTTGTTTTTATAATAACCCATCTGGTTACCTCTCATGCGAAGGTGAATCGACTTAATCCTGTGGTTCAAGGCATGAATCTGAAATGTTTCACTTTCATGGAGCTAAAAGAAGCCACCAACGGATTCAAGGAAGTGCTAGGTTGTGGTGCTTTTGCAACTGTTTTCAAAGGAGTTTTAGCATCTGATAACGGGAAGTTCATTGCTGTCAAAAGATTGAACACTGTGGTCAAAGAAAATGATTTGGAATTCAAAGCTGAAGTGAGCGCAATTGGTGGAACAAATCACAGAAATTTAGTCCAACTACTCGGATTTTGTAATGAGGGGCAACACCAGCTTCTTGTGTATGAGTACATTAGCAATGGCTCTCTAGCAACCTTCCTTTTCGGAGAGTCAAGACCAATCTGGAATACAAGAAAAAAAATTGCCTTAAGAACTGCAAGAGGGCTCTTGTATTTGCACGAGGAGTGCAGCAGCCAAATCATACATTGTGACATTAAGCCTCAAAACATTCTTCTCGACGATTCTTTCACAGCAAGAATAGCTGACTTTGGAGTAGCCAAGCTTTTGAAATCTGACCAAACTCGAACAACTACTAGAATCAGAGGCACAAAAGGTTATGTCGCTCCTGAATGGTTCAAAAGTTTGCCTGTCACAGTGAAGGTTGATGTTTATAGCTACAGCATGGTGCTGTTGGAGATTGTTTGCTGCAGGAAAAACTATGAACCAGAAGCACCAGCTGAAGATCAAATGATATTAGCCGATTGGGCATACGATTGCTATAAGCAAAAGAAACTGCATCTGTTGTGGCAGAATGTAGGCGACGATCAGGAAATTGATGGCATCGAAAAGTTGGAAAAGTATTTGATGATTGCATTTTGGTGCATTCAAGAGGATCCATCAGCAAGACCTACCATAAAGAAAGTGACACAGATGCTCGAAGGGACAGTTGAAGTCTCAGTGCCTCCAAATCTGTCCTCATTATATGTTCAATATAAGTGA

Protein Analysis

473

Amino Acids

53.65

Weight (kDa)

7.82

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 183 - 453 3.9e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 184 - 451 1.5e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 44, 434
AclWI GGATC 2 cut(s) 1310, 1323
AcsI RAATTY 3 cut(s) 122, 668, 712
AcuI CTGAAG 2 cut(s) 699, 1182
AfaI GTAC 2 cut(s) 61, 773
AflII CTTAAG 1 cut(s) 850
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 2 cut(s) 1310, 1323
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 5 cut(s) 207, 392, 891, 894, 1128
ApoI RAATTY 3 cut(s) 122, 668, 712
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 337, 478
BamHI GGATCC 1 cut(s) 1315
BanII GRGCYC 1 cut(s) 870
BauI CACGAG 1 cut(s) 881
BbvI GCAGC 5 cut(s) 194, 404, 903, 906, 1115
BccI CCATC 3 cut(s) 450, 1253, 1327
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 1381
BfaI CTAG 3 cut(s) 560, 791, 1017
BfmI CTRYAG 2 cut(s) 1099, 1129
BfrI CTTAAG 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 1187
BisI GCNGC 5 cut(s) 208, 393, 892, 895, 1129
BlpI GCTNAGC 1 cut(s) 211
BlsI GCNGC 5 cut(s) 209, 394, 893, 896, 1130
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 1317
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 4 cut(s) 611, 1228, 1272, 1344
Bpu1102I GCTNAGC 1 cut(s) 211
Bse3DI GCAATG 3 cut(s) 231, 621, 787
BseBI CCWGG 1 cut(s) 153
BseMI GCAATG 3 cut(s) 231, 621, 787
BseMII CTCAG 1 cut(s) 1392
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 5 cut(s) 194, 404, 903, 906, 1115
BsgI GTGCAG 1 cut(s) 910
BshFI GGCC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 1378
BsmAI GTCTC 1 cut(s) 1381
BsmFI GGGAC 1 cut(s) 1378
BsmI GAATGC 1 cut(s) 1305
BsnI GGCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 4 cut(s) 399, 1165, 1246, 1315
Bsp1720I GCTNAGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 1391
BspLI GGNNCC 1 cut(s) 1317
BspMAI CTGCAG 1 cut(s) 1133
BspPI GGATC 2 cut(s) 1310, 1323
BspTI CTTAAG 1 cut(s) 850
BsrDI GCAATG 3 cut(s) 231, 621, 787
BssMI GATC 4 cut(s) 399, 1165, 1246, 1315
BssSI CACGAG 1 cut(s) 881
Bst2BI CACGAG 1 cut(s) 881
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 6 cut(s) 195, 371, 583, 646, 1078, 1369
BstAFI CTTAAG 1 cut(s) 850
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 211, 1378
BstEII GGTNACC 1 cut(s) 448
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 4 cut(s) 402, 1168, 1249, 1318
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 4 cut(s) 399, 1165, 1246, 1315
BstMWI GCNNNNNNNGC 5 cut(s) 175, 204, 754, 962, 1187
BstNI CCWGG 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 1099, 1129
BstV1I GCAGC 5 cut(s) 194, 404, 903, 906, 1115
BstX2I RGATCY 1 cut(s) 1315
BstYI RGATCY 1 cut(s) 1315
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 6 cut(s) 141, 200, 402, 642, 1083, 1386
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 60, 772
CviAII CATG 4 cut(s) 458, 496, 520, 1105
CviQI GTAC 2 cut(s) 60, 772
DdeI CTNAG 2 cut(s) 211, 1378
DpnI GATC 4 cut(s) 401, 1167, 1248, 1317
DpnII GATC 4 cut(s) 399, 1165, 1246, 1315
Eco24I GRGCYC 1 cut(s) 870
Eco57I CTGAAG 2 cut(s) 699, 1182
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 870
FaeI CATG 4 cut(s) 461, 499, 523, 1108
FaqI GGGAC 1 cut(s) 1378
FatI CATG 4 cut(s) 457, 495, 519, 1104
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 5 cut(s) 208, 393, 892, 895, 1129
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 208, 393, 892, 895, 1129
FspBI CTAG 3 cut(s) 560, 791, 1017
GlaI GCGC 1 cut(s) 688
GluI GCNGC 5 cut(s) 208, 393, 892, 895, 1129
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 1 cut(s) 689
Hin1II CATG 4 cut(s) 461, 499, 523, 1108
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 983
HinfI GANTC 8 cut(s) 77, 276, 469, 499, 546, 812, 944, 1020
HphI GGTGA 2 cut(s) 337, 478
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 7 cut(s) 106, 504, 607, 731, 809, 997, 1025
Hpy188III TCNNGA 7 cut(s) 128, 816, 826, 938, 1049, 1250, 1310
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 944, 1247
HpyAV CCTTC 5 cut(s) 265, 457, 808, 1075, 1355
HpyCH4III ACNGT 6 cut(s) 195, 371, 583, 646, 1078, 1369
HpyCH4V TGCA 9 cut(s) 198, 578, 860, 880, 891, 1131, 1219, 1295, 1305
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 204, 754, 962, 1187
HpyF3I CTNAG 2 cut(s) 211, 1378
Hsp92II CATG 4 cut(s) 461, 499, 523, 1108
HspAI GCGC 1 cut(s) 687
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 4 cut(s) 399, 1165, 1246, 1315
LmnI GCTCC 2 cut(s) 523, 1051
Lsp1109I GCAGC 5 cut(s) 194, 404, 903, 906, 1115
LweI GCATC 4 cut(s) 611, 1228, 1272, 1344
MaeI CTAG 3 cut(s) 560, 791, 1017
MaeIII GTNAC 4 cut(s) 448, 911, 1072, 1345
MalI GATC 4 cut(s) 401, 1167, 1248, 1317
MboI GATC 4 cut(s) 399, 1165, 1246, 1315
MboII GAAGA 4 cut(s) 36, 280, 926, 1175
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 1 cut(s) 1315
MhlI GDGCHC 1 cut(s) 870
MluCI AATT 8 cut(s) 47, 122, 137, 668, 690, 712, 843, 1254
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 5 cut(s) 245, 292, 745, 1095, 1254
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 6 cut(s) 183, 288, 407, 477, 851, 918
MslI CAYNNNNRTG 2 cut(s) 518, 1300
MspA1I CMGCKG 1 cut(s) 1160
MspCI CTTAAG 1 cut(s) 850
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 1305
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 5 cut(s) 175, 204, 754, 962, 1187
NdeII GATC 4 cut(s) 399, 1165, 1246, 1315
NlaIII CATG 4 cut(s) 461, 499, 523, 1108
NlaIV GGNNCC 1 cut(s) 1317
NmuCI GTSAC 3 cut(s) 911, 1072, 1345
PctI GAATGC 1 cut(s) 1305
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 7 cut(s) 77, 276, 469, 499, 546, 944, 1020
PkrI GCNGC 5 cut(s) 209, 394, 893, 896, 1130
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PsiI TTATAA 2 cut(s) 44, 434
Psp6I CCWGG 1 cut(s) 151
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 1317
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 1315
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 2 cut(s) 61, 773
RsaNI GTAC 2 cut(s) 60, 772
RseI CAYNNNNRTG 2 cut(s) 518, 1300
SaqAI TTAA 6 cut(s) 183, 288, 407, 477, 851, 918
SatI GCNGC 5 cut(s) 208, 393, 892, 895, 1129
Sau3AI GATC 4 cut(s) 399, 1165, 1246, 1315
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 4 cut(s) 611, 1228, 1272, 1344
SfcI CTRYAG 2 cut(s) 1099, 1129
SmiMI CAYNNNNRTG 2 cut(s) 518, 1300
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
Sse9I AATT 8 cut(s) 47, 122, 137, 668, 690, 712, 843, 1254
SspMI CTAG 3 cut(s) 560, 791, 1017
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 6 cut(s) 195, 371, 583, 646, 1078, 1369
TaqI TCGA 5 cut(s) 472, 939, 1006, 1266, 1359
TasI AATT 8 cut(s) 47, 122, 137, 668, 690, 712, 843, 1254
TatI WGTACW 2 cut(s) 59, 771
TfiI GAWTC 7 cut(s) 77, 276, 469, 499, 546, 944, 1020
Tru1I TTAA 6 cut(s) 183, 288, 407, 477, 851, 918
Tru9I TTAA 6 cut(s) 183, 288, 407, 477, 851, 918
TscAI CASTG 6 cut(s) 148, 200, 402, 649, 1083, 1386
TseFI GTSAC 3 cut(s) 911, 1072, 1345
TseI GCWGC 5 cut(s) 207, 392, 891, 894, 1128
Tsp45I GTSAC 3 cut(s) 911, 1072, 1345
TspDTI ATGAA 6 cut(s) 23, 261, 508, 512, 610, 1158
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 6 cut(s) 148, 200, 402, 649, 1083, 1386
Vha464I CTTAAG 1 cut(s) 850
XapI RAATTY 3 cut(s) 122, 668, 712
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 560, 791, 1017
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.