pycom03g01870

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
1390199 .. 1390960
762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01870.1

Sequence Viewer

Length: 762 bp
ATGTTTATTCTACAATCTGACGGAAATCTCTTGCTTTACACAACGAGATTCCCACTGCCGACAAACAATTTTGCTTACTTTGCAACCATGACTATGTATGCCGGCTTTCAGTTCATCTTCAATCAGTCCGGCTATCTTTACCTTACTGCAAAGAACGGAAGCATACTGAATATGGTATCATCCAACACAGTTTCCATGCAAAATTTCTACCATAAAGTAACTCTGGAGCATGACGGAGTTTTGAGGCACTCTGTTCATCCTAAAACCGCTGCCTCAAGTGCCGGAAGCCCCATGGCTTGGTCCCCTTTGACCTCCGAACCTTCCAATATTTGCTTAAGAATTGAAGGAGCCATAGGCAGCGGTGCATGTGGATACAACAGCCTCTGCAGTTATAATGATAAAGGACCAACTTGCCAATGTCCTTATGGCTACACATTTATTGATCCCAATGATATCTTGAAAGGATGCAAGCAAAACTTTGTTTCACAAAGTTGTGATGCGGCCTTGCCGGAGACAGAGAGTTTTGATTTTCACGAGATGCAAAGCACAGAGTGGGCTGGCGGTGGTTATGAGCAATTTACATCAGTATCGGAGGAATGGTGCAGACAGAATTGCTTAGACGATTGTTTTTGTGTCGTTGCCATTTTCAAGGATAGAGAGTGTGAAAAGAAGAGAATTCCTCTTTCGAATGGAAGAATGGACCCGAGTATTGGTGGAAAAGCTCTCATCAAAGTAAGGAAAGACAACTCCTTGAAGTATTGA

Protein Analysis

254

Amino Acids

28.18

Weight (kDa)

5.95

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AccB7I CCANNNNNTGG 1 cut(s) 297
AciI CCGC 4 cut(s) 267, 360, 500, 561
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 2 cut(s) 202, 675
AdeI CACNNNGTG 1 cut(s) 552
AfiI CCNNNNNNNGG 2 cut(s) 297, 710
AflII CTTAAG 1 cut(s) 334
AgsI TTSAA 5 cut(s) 121, 344, 460, 649, 754
AluBI AGCT 1 cut(s) 722
AluI AGCT 1 cut(s) 722
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 269, 357
ApoI RAATTY 2 cut(s) 202, 675
AspS9I GGNCC 3 cut(s) 300, 404, 700
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 3 cut(s) 300, 404, 700
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BauI CACGAG 1 cut(s) 533
BbvI GCAGC 2 cut(s) 256, 369
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 385
BfrI CTTAAG 1 cut(s) 334
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 3 cut(s) 270, 358, 501
BlsI GCNGC 3 cut(s) 271, 359, 502
Bme18I GGWCC 3 cut(s) 300, 404, 700
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 300, 404, 700
BmiI GGNNCC 3 cut(s) 302, 349, 702
BmsI GCATC 3 cut(s) 455, 487, 528
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 710
Bse118I RCCGGY 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 179, 256, 470
BseLI CCNNNNNNNGG 2 cut(s) 297, 710
BseXI GCAGC 2 cut(s) 256, 369
BsgI GTGCAG 1 cut(s) 622
BshFI GGCC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 4 cut(s) 102, 129, 282, 509
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 297, 710
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 686
Bsp143I GATC 1 cut(s) 442
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 4 cut(s) 267, 360, 500, 561
BspANI GGCC 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 302, 349, 702
BspMAI CTGCAG 1 cut(s) 389
BspPI GGATC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 686
BspTI CTTAAG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 665
BstAFI CTTAAG 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 3 cut(s) 103, 470, 559
BstDEI CTNAG 1 cut(s) 616
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 179, 256, 470
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 80, 278
BstNSI RCATGY 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 256, 369
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 179, 256, 470
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 103, 470, 559
CaiI CAGNNNCTG 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 300, 404, 700
CviAII CATG 5 cut(s) 88, 196, 230, 292, 366
DdeI CTNAG 1 cut(s) 616
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DraIII CACNNNGTG 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 291
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 300, 404, 700
Eco88I CYCGRG 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 675
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 91, 199, 233, 295, 369
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 286
FatI CATG 5 cut(s) 87, 195, 229, 291, 365
Fnu4HI GCNGC 3 cut(s) 270, 358, 501
FokI GGATG 3 cut(s) 166, 243, 477
Fsp4HI GCNGC 3 cut(s) 270, 358, 501
GluI GCNGC 3 cut(s) 270, 358, 501
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 503
HapII CCGG 4 cut(s) 102, 129, 282, 509
Hin1II CATG 5 cut(s) 91, 199, 233, 295, 369
HinfI GANTC 1 cut(s) 48
HpaII CCGG 4 cut(s) 102, 129, 282, 509
Hpy188I TCNGA 3 cut(s) 19, 316, 592
Hpy188III TCNNGA 3 cut(s) 224, 457, 533
HpyAV CCTTC 2 cut(s) 330, 338
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 8 cut(s) 83, 149, 199, 365, 387, 468, 541, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 278
HpyF3I CTNAG 1 cut(s) 616
Hsp92II CATG 5 cut(s) 91, 199, 233, 295, 369
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 2 cut(s) 226, 347
LpnPI CCDG 6 cut(s) 115, 142, 209, 295, 522, 543
Lsp1109I GCAGC 2 cut(s) 256, 369
LweI GCATC 3 cut(s) 455, 487, 528
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 3 cut(s) 109, 682, 705
MluCI AATT 6 cut(s) 67, 202, 339, 575, 610, 675
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 6 cut(s) 237, 283, 322, 392, 586, 690
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 2 cut(s) 269, 360
MspCI CTTAAG 1 cut(s) 334
MspI CCGG 4 cut(s) 102, 129, 282, 509
MwoI GCNNNNNNNGC 2 cut(s) 80, 278
NaeI GCCGGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 291
NdeII GATC 1 cut(s) 442
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 5 cut(s) 91, 199, 233, 295, 369
NlaIV GGNNCC 3 cut(s) 302, 349, 702
NspI RCATGY 1 cut(s) 369
NspV TTCGAA 1 cut(s) 686
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 3 cut(s) 271, 359, 502
PsiI TTATAA 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 302, 349, 702
PspPI GGNCC 3 cut(s) 300, 404, 700
PstI CTGCAG 1 cut(s) 389
PstNI CAGNNNCTG 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 3 cut(s) 270, 358, 501
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 3 cut(s) 300, 404, 700
SetI ASST 4 cut(s) 144, 314, 322, 724
SfaNI GCATC 3 cut(s) 455, 487, 528
SfcI CTRYAG 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 3 cut(s) 300, 404, 700
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 274, 334
SmoI CTYRAG 2 cut(s) 274, 334
Sse9I AATT 6 cut(s) 67, 202, 339, 575, 610, 675
SsiI CCGC 4 cut(s) 267, 360, 500, 561
SspI AATATT 1 cut(s) 328
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 686
TasI AATT 6 cut(s) 67, 202, 339, 575, 610, 675
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 60
TseI GCWGC 2 cut(s) 269, 357
TspDTI ATGAA 2 cut(s) 103, 245
TspGWI ACGGA 3 cut(s) 36, 171, 249
TspRI CASTG 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 334
VpaK11BI GGWCC 3 cut(s) 300, 404, 700
XapI RAATTY 2 cut(s) 202, 675
XceI RCATGY 1 cut(s) 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.