Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

84744740 .. 84745462

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35343

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTTTTGAACAACAATATTTTATATGCTTTCTGCTTGTCCTACTACAGCTTCCCTTTTTCACCATTGCTCAAAGTTACAAAAACATATCTTTTAGCTCATCCCTTACTGCACAGGAGGACAGTGACCCTCATTGGGCCTCCCCGTCTGGGGAGTTCGCGTTCGGCTTCAGAAAAATTGGCAATGCTGGCTTCTTACTAGCCATCTGGTTTGAAAATATACAAGAAAAGACTATAGTCTGGTCAGCCAATCGCAATAATCCAGTGCAAGAAGGATCGAGCGTTGAATTCTCTGCAGAAGGCAAGCTTACTCTCACTGATATTGGAACAGGCAAACCAACAAACATTGCTGATGGTCAGTCTACATATACTGGAGTCGCCTATGCTGCCATGCTGGACAAGGGAATTTTCGTTCTGGCAACCCGAAATTCAACCTATTTGTGGCAGAGTTTTGATCATCCAACCGATACCATCCTTCCCACACAGACCCTGAATCTAAACAGCAGTCTCTTTGCGCAACTTACAGCAACAAATTACTCAGAAGGAATATTCAAGTTTGTTCTAGATTCTGACGGAAATCTTATGCTTTATACAGTGAATTATCCATTGAAGAGTAATAATTTTATCTACTGGCCAATTCAAACTGGCGGTGGATTTCAGGTCCTCTTCAATCAATCCGGCTCTATTTACCTCACAACACGGAACGGAAGCATACTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

240

Amino Acids

26.63

Weight (kDa)

4.81

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 169	1.7e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	161
AciI	CCGC	1 cut(s)	648
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	3 cut(s)	287, 405, 427
AcuI	CTGAAG	1 cut(s)	154
AfiI	CCNNNNNNNGG	4 cut(s)	136, 150, 151, 441
AgsI	TTSAA	8 cut(s)	11, 215, 287, 432, 553, 610, 641, 670
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 396, 428
AluBI	AGCT	3 cut(s)	52, 99, 307
AluI	AGCT	3 cut(s)	52, 99, 307
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	2 cut(s)	138, 632
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	3 cut(s)	287, 405, 427
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	138, 661
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	212, 347, 479
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	200, 563
BfmI	CTRYAG	3 cut(s)	47, 234, 294
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	138, 661
BoxI	GACNNNNGTC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 150, 151, 441
Bse1I	ACTGG	4 cut(s)	263, 376, 635, 649
Bse3DI	GCAATG	3 cut(s)	66, 190, 345
BseGI	GGATG	3 cut(s)	101, 457, 471
BseLI	CCNNNNNNNGG	4 cut(s)	136, 150, 151, 441
BseMI	GCAATG	3 cut(s)	66, 190, 345
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	4 cut(s)	263, 376, 635, 649
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	140, 634
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	4 cut(s)	136, 150, 151, 441
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	140, 634
Bsp143I	GATC	2 cut(s)	275, 454
BspACI	CCGC	1 cut(s)	648
BspANI	GGCC	2 cut(s)	140, 634
BspCNI	CTCAG	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	283
BsrDI	GCAATG	3 cut(s)	66, 190, 345
BsrI	ACTGG	4 cut(s)	263, 376, 635, 649
BssMI	GATC	2 cut(s)	275, 454
Bst4CI	ACNGT	2 cut(s)	125, 595
Bst6I	CTCTTC	2 cut(s)	605, 671
BstC8I	GCNNGC	2 cut(s)	190, 305
BstDEI	CTNAG	1 cut(s)	538
BstF5I	GGATG	3 cut(s)	101, 457, 471
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	2 cut(s)	278, 457
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	275, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 386
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSFI	CTRYAG	3 cut(s)	47, 234, 294
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	140, 634
BtsCI	GGATG	3 cut(s)	101, 457, 471
BtsIMutI	CAGTG	4 cut(s)	130, 270, 315, 600
Cac8I	GCNNGC	2 cut(s)	190, 305
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	138, 661
CviAII	CATG	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	2 cut(s)	277, 456
DpnII	GATC	2 cut(s)	275, 454
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	2 cut(s)	605, 671
EarI	CTCTTC	2 cut(s)	605, 671
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	287
FaeI	CATG	1 cut(s)	394
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	88, 444, 458
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	2 cut(s)	200, 563
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	140, 634
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	375, 493, 566
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	3 cut(s)	173, 541, 571
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	4 cut(s)	266, 293, 485, 536
HpyCH4III	ACNGT	2 cut(s)	125, 595
HpyCH4V	TGCA	3 cut(s)	113, 268, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 386
HpyF3I	CTNAG	1 cut(s)	538
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	275, 454
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	200, 563
MaeIII	GTNAC	2 cut(s)	77, 125
MalI	GATC	2 cut(s)	277, 456
MboI	GATC	2 cut(s)	275, 454
MboII	GAAGA	2 cut(s)	622, 658
MlsI	TGGCCA	1 cut(s)	634
MluCI	AATT	8 cut(s)	177, 287, 405, 427, 532, 598, 619, 636
MluNI	TGGCCA	1 cut(s)	634
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	112, 141, 151, 674, 701
Mox20I	TGGCCA	1 cut(s)	634
MscI	TGGCCA	1 cut(s)	634
Msp20I	TGGCCA	1 cut(s)	634
MspI	CCGG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	189, 386
NdeII	GATC	2 cut(s)	275, 454
NlaIII	CATG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	493, 566
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	661
PspPI	GGNCC	2 cut(s)	138, 661
PspPPI	RGGWCCY	1 cut(s)	661
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	490
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	275, 454
Sau96I	GGNCC	2 cut(s)	138, 661
SchI	GAGTC	1 cut(s)	384
SetI	ASST	6 cut(s)	54, 101, 309, 437, 663, 693
SfcI	CTRYAG	3 cut(s)	47, 234, 294
SinI	GGWCC	1 cut(s)	661
Sse9I	AATT	8 cut(s)	177, 287, 405, 427, 532, 598, 619, 636
SsiI	CCGC	1 cut(s)	648
SspI	AATATT	2 cut(s)	20, 549
SspMI	CTAG	2 cut(s)	200, 563
TaaI	ACNGT	2 cut(s)	125, 595
TaqI	TCGA	1 cut(s)	278
TasI	AATT	8 cut(s)	177, 287, 405, 427, 532, 598, 619, 636
TfiI	GAWTC	2 cut(s)	493, 566
TscAI	CASTG	4 cut(s)	130, 270, 322, 600
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	125
TspGWI	ACGGA	3 cut(s)	588, 715, 720
TspRI	CASTG	4 cut(s)	130, 270, 322, 600
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	3 cut(s)	287, 405, 427
XbaI	TCTAGA	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	2 cut(s)	200, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.