pycom11g02040

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
1767898 .. 1768527
630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02040.1

Sequence Viewer

Length: 630 bp
ATGCTTGACACGGGAAATTTCGTGCTGGCCAACCGAAGTTCATTCTATTTGTGGGAGAGTTTTCAGCATCCAACTGATACAATCCTCCCCACTCAAATACTCCACGGGAGCTCACTCTTTGCGCGCCATTCGCTAACAAATTACTCGAAAGGAAGATTTATGTTTAAGCTAGAGTCTAATGGAACTCCTGCACTTTATACAACCAATTTCCCATTTGATTCTCCTAATTCTCATTACTGGTCAATCCAAACGGTGGGAAACTATCAGGTATTCTTCAACCCGTCTGGTTTTATTTACCTTACAGACAGTGAACAAAACCGAGTTGAGGACATCGTACCACCCACCACAGAGTCATTGAAAGATTCATACCAGAGAGCTACTGTTGACTATAATGGAGTTTTGATGCACTATATCTACCAGAAAACAAATGGCGGGCTTTGGTACGGTGTGGCATCCTCACCGATAAATATCTGCACGGCGGTTGTGGAAACAACAGGCGGCGGTGCTTGTGGGTTCAATGGGTTATGTGTCTTGGGGGATCAAGGACCAACTTGCGAGTGCCCTGATGGTTACACGCTAAGTGATCCAAATGATGCGCTGAAAGGATGCAGACAGAACTTCACTGCATAA

Protein Analysis

210

Amino Acids

23.16

Weight (kDa)

5.03

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 1 - 34 4.2e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AccII CGCG 1 cut(s) 124
AciI CCGC 4 cut(s) 432, 479, 498, 501
AclWI GGATC 2 cut(s) 546, 578
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 2 cut(s) 336, 443
AfiI CCNNNNNNNGG 2 cut(s) 253, 325
AgsI TTSAA 3 cut(s) 277, 358, 517
AluBI AGCT 3 cut(s) 111, 169, 377
AluI AGCT 3 cut(s) 111, 169, 377
Alw21I GWGCWC 1 cut(s) 113
AlwI GGATC 2 cut(s) 546, 578
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 3 cut(s) 124, 126, 598
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 450
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 563
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 492
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmsI GCATC 5 cut(s) 76, 393, 461, 583, 596
BsaBI GATNNNNATC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 325
Bse1I ACTGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 67, 452, 611
BseJI GATNNNNATC 1 cut(s) 467
BseLI CCNNNNNNNGG 2 cut(s) 253, 325
BseNI ACTGG 1 cut(s) 242
BsePI GCGCGC 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 563
BsgI GTGCAG 2 cut(s) 174, 457
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 253, 325
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 113, 563
Bsp143I GATC 2 cut(s) 538, 583
BspACI CCGC 4 cut(s) 432, 479, 498, 501
BspANI GGCC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 124
BspPI GGATC 2 cut(s) 546, 578
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 103
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 2 cut(s) 538, 583
Bst4CI ACNGT 4 cut(s) 253, 308, 382, 446
BstC8I GCNNGC 3 cut(s) 27, 124, 434
BstDEI CTNAG 1 cut(s) 578
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 3 cut(s) 67, 452, 611
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 3 cut(s) 124, 126, 598
BstKTI GATC 2 cut(s) 541, 586
BstMBI GATC 2 cut(s) 538, 583
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 3 cut(s) 67, 452, 611
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 313, 621
Cac8I GCNNGC 3 cut(s) 27, 124, 434
CfoI GCGC 3 cut(s) 124, 126, 598
Cfr13I GGNCC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 335, 442
CviJI RGCY 5 cut(s) 29, 111, 169, 377, 436
CviKI_1 RGCY 5 cut(s) 29, 111, 169, 377, 436
CviQI GTAC 2 cut(s) 335, 442
DdeI CTNAG 1 cut(s) 578
DpnI GATC 2 cut(s) 540, 585
DpnII GATC 2 cut(s) 538, 583
EaeI YGGCCR 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 113
FaiI YATR 7 cut(s) 161, 198, 367, 390, 411, 526, 628
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 1 cut(s) 499
FokI GGATG 3 cut(s) 54, 439, 618
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 1 cut(s) 170
GlaI GCGC 3 cut(s) 123, 125, 597
GluI GCNGC 1 cut(s) 499
HaeIII GGCC 1 cut(s) 29
HhaI GCGC 3 cut(s) 124, 126, 598
Hin6I GCGC 3 cut(s) 122, 124, 596
HinP1I GCGC 3 cut(s) 122, 124, 596
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 4 cut(s) 173, 218, 350, 362
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 311, 385
Hpy8I GTNNAC 2 cut(s) 311, 385
HpyCH4III ACNGT 4 cut(s) 253, 308, 382, 446
HpyCH4V TGCA 5 cut(s) 191, 406, 474, 609, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 578
HspAI GCGC 3 cut(s) 122, 124, 596
Kzo9I GATC 2 cut(s) 538, 583
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 9 cut(s) 11, 201, 223, 251, 270, 383, 431, 480, 576
LweI GCATC 5 cut(s) 76, 393, 461, 583, 596
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 569
MalI GATC 2 cut(s) 540, 585
MboI GATC 2 cut(s) 538, 583
MboII GAAGA 2 cut(s) 165, 265
MhlI GDGCHC 2 cut(s) 113, 563
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 16, 139, 205, 226
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 182, 359
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 95, 319, 466
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 29
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 538, 583
PauI GCGCGC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 218, 362
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 2 cut(s) 181, 358
PpsI GAGTC 2 cut(s) 181, 358
Psp124BI GAGCTC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 545
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 2 cut(s) 336, 443
RsaNI GTAC 2 cut(s) 335, 442
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 2 cut(s) 538, 583
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 2 cut(s) 182, 359
SduI GDGCHC 2 cut(s) 113, 563
SetI ASST 5 cut(s) 113, 171, 270, 300, 379
SfaNI GCATC 5 cut(s) 76, 393, 461, 583, 596
SinI GGWCC 1 cut(s) 545
Sse9I AATT 4 cut(s) 16, 139, 205, 226
SsiI CCGC 4 cut(s) 432, 479, 498, 501
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 113
TaaI ACNGT 4 cut(s) 253, 308, 382, 446
TaqI TCGA 1 cut(s) 146
TasI AATT 4 cut(s) 16, 139, 205, 226
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 2 cut(s) 218, 362
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 313, 628
TspDTI ATGAA 2 cut(s) 30, 354
TspRI CASTG 2 cut(s) 313, 628
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.