Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

4889996 .. 4891980

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGGCTGGAGGAGACTGTGTCATGATTGCTCTTTGGTGTATTCCGGAAGACCCATCTCTTCGACCCACAATGAGGAAGGTTGTACGGATGATTGAAGGATTAGTGGAAGTACATGTTCCACCATGCCCATCCCCATATAACGAGTGGCGTGAAACTTGTTTGGTTTGTGTCGTAGTCAAAGATTTACAGCCCAAAAGCAACGACTCTTCGAGTGCTTGGTCCACTTTTACCGTCATACCTTCAAATATTTGCACAGCAATTCGGGAATATACGGGTGGGGGTGCATGTGGGTTTAACGACTTATGTAGACATGATGAGGATGCAGCTCATACTAATTGCTCATGCCCTCCGAGTTACATCCCCATTGACCAAGACGATGAGAGGAAAGGGTGCACGCAAAACTTTGTTCCCCAAAGTTGTGATAAAGCCTCATCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

147

Amino Acids

16.17

Weight (kDa)

5.11

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	46
AfaI	GTAC	2 cut(s)	87, 114
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	98, 246
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	2 cut(s)	64, 139
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	4 cut(s)	96, 131, 328, 360
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	20, 235
Bst6I	CTCTTC	2 cut(s)	66, 214
BstC8I	GCNNGC	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	96, 131, 328, 360
BstMAI	GTCTC	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	119, 291
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	96, 131, 328, 360
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	86, 113
CviAII	CATG	6 cut(s)	25, 116, 126, 288, 314, 345
CviJI	RGCY	4 cut(s)	8, 193, 329, 431
CviKI_1	RGCY	4 cut(s)	8, 193, 329, 431
CviQI	GTAC	2 cut(s)	86, 113
Eam1104I	CTCTTC	2 cut(s)	66, 214
EarI	CTCTTC	2 cut(s)	66, 214
Eco47I	GGWCC	1 cut(s)	222
FaeI	CATG	6 cut(s)	28, 119, 129, 291, 317, 348
FatI	CATG	6 cut(s)	24, 115, 125, 287, 313, 344
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	4 cut(s)	103, 118, 335, 347
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	30
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	6 cut(s)	28, 119, 129, 291, 317, 348
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	225, 311, 396
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	3 cut(s)	25, 47, 266
Hpy8I	GTNNAC	3 cut(s)	225, 311, 396
HpyAV	CCTTC	3 cut(s)	73, 92, 252
HpyCH4III	ACNGT	2 cut(s)	20, 235
HpyCH4V	TGCA	4 cut(s)	255, 287, 326, 396
Hsp92II	CATG	6 cut(s)	28, 119, 129, 291, 317, 348
Kpn2I	TCCGGA	1 cut(s)	46
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	356
MboII	GAAGA	3 cut(s)	53, 62, 201
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	2 cut(s)	261, 337
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	6 cut(s)	5, 69, 313, 360, 378, 442
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	47
NlaIII	CATG	6 cut(s)	28, 119, 129, 291, 317, 348
NspI	RCATGY	2 cut(s)	119, 291
PagI	TCATGA	1 cut(s)	24
PciI	ACATGT	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	222
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	87, 114
RsaNI	GTAC	2 cut(s)	86, 113
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	3 cut(s)	84, 244, 331
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	261, 337
SspI	AATATT	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	20, 235
TaqI	TCGA	3 cut(s)	64, 212, 437
TasI	AATT	2 cut(s)	261, 337
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	20
VneI	GTGCAC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	222
XceI	RCATGY	2 cut(s)	119, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.