Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83819945 .. 83820868

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG544600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGCATACTTAACATGGTTTTTCCTAATACAGTTTCAGTGCAAGATTTCTACCACAGAGCAACTCGAGTATGATGGAGTTTTGAGGCACTATGTTTACCCTAAAAGCACCAGCTCAAGTCTTAGCTGGCCTATGGCTTGGTCCACTCTGTCTTTCATACCTTCAAATATATGCCTGAGTATTCGTGGATATACAGGCTTTGGTGCTTGTGGGTTCAACAGTATTTGCAGACATGATCAAGGACCAATCTGTGAGTGCCCACATGGCTATACCTTTATTGATTCAAATGATATGCACAAAGGATGCAGACAGAATTTTGTTCCACAACGTTGCGATGAAGCCTCACTAGATATGGATCTTTTTTATTTTCAAGAGATGCATAGCACAAATTGGCCTAACTCGATTTATCAGAAGTTTACACCAGTAAGTGAGGAATGGTGCAGGCAGAGTTGTCTTGTTGATTGTTTCTGTGATGTTTTCTACTACGAAAACAATGGCTGTTGGAAGCAGAGAATCCCTCTTTTGAATGGGAGGATGGATCCCAGTGTTGGTGGAAAAGCTTTGATCAAAATAAGGAAAAACAATTCTACTTTGATACCTGGAGGCACCGGTACAAAAAAGGAGCATAAGTATTCAACTTTGATCCTCATCGGAACAGTTCTACTGTGTAGCTTTGTTTTCCTGAGCTTCCACTTACCATTCATAACCTATATGGTTGTTTCTCGTATTTATTCTAGAAAAGGAAAGGTGAGTCAATCTTTCCCATCCTTTGAAGAAGTGAATCTGAAATGTTTCACTTACGAAGAGTTACAGGAAGCTACAAATGGATTCAATGAAGAAATAGGCCGTGGTGCTTCTGCAACTGTTTTTAAAGGAGTTTTAGCACTTGACGATGCGAATGTATTGCTGTCAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

307

Amino Acids

35.03

Weight (kDa)

6.39

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	608
AclI	AACGTT	1 cut(s)	331
AclWI	GGATC	4 cut(s)	366, 536, 549, 640
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	8 cut(s)	168, 220, 288, 374, 529, 639, 776, 835
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	6 cut(s)	117, 129, 563, 675, 690, 821
AluI	AGCT	6 cut(s)	117, 129, 563, 675, 690, 821
AlwI	GGATC	4 cut(s)	366, 536, 549, 640
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	131, 395, 847
ApoI	RAATTY	1 cut(s)	316
AsiGI	ACCGGT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	794
AspS9I	GGNCC	2 cut(s)	144, 245
AsuHPI	GGTGA	1 cut(s)	763
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	144, 245
BaeGI	GKGCMC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	608
BccI	CCATC	3 cut(s)	71, 532, 775
BceAI	ACGGC	1 cut(s)	834
BcgI	CGANNNNNNTGC	2 cut(s)	889, 923
BciT130I	CCWGG	1 cut(s)	603
BclI	TGATCA	2 cut(s)	238, 567
BfaI	CTAG	2 cut(s)	350, 738
BglI	GCCNNNNNGGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	144, 245
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	144, 245
BmiI	GGNNCC	2 cut(s)	543, 610
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	296, 369, 886
BmuI	ACTGGG	1 cut(s)	540
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	103
BsaBI	GATNNNNATC	2 cut(s)	357, 650
BsaJI	CCNNGG	1 cut(s)	850
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	425, 546
Bse8I	GATNNNNATC	2 cut(s)	357, 650
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	3 cut(s)	311, 543, 767
BseJI	GATNNNNATC	2 cut(s)	357, 650
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	170, 677
BseNI	ACTGG	2 cut(s)	425, 546
BseSI	GKGCMC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	133, 397, 849
BshNI	GGYRCC	1 cut(s)	608
BshTI	ACCGGT	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	612
BslI	CCNNNNNNNGG	1 cut(s)	551
BsnI	GGCC	3 cut(s)	133, 397, 849
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	5 cut(s)	238, 358, 541, 567, 645
BspANI	GGCC	3 cut(s)	133, 397, 849
BspCNI	CTCAG	2 cut(s)	171, 678
BspLI	GGNNCC	2 cut(s)	543, 610
BspPI	GGATC	4 cut(s)	366, 536, 549, 640
BspT107I	GGYRCC	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	425, 546
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	850
BssMI	GATC	5 cut(s)	238, 358, 541, 567, 645
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	5 cut(s)	36, 224, 661, 669, 868
Bst6I	CTCTTC	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	131, 446
BstDEI	CTNAG	3 cut(s)	125, 179, 686
BstDSI	CCRYGG	1 cut(s)	850
BstF5I	GGATG	3 cut(s)	311, 543, 767
BstKTI	GATC	5 cut(s)	241, 361, 544, 570, 648
BstMBI	GATC	5 cut(s)	238, 358, 541, 567, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	358, 541
BstYI	RGATCY	2 cut(s)	358, 541
BsuRI	GGCC	3 cut(s)	133, 397, 849
BtgI	CCRYGG	1 cut(s)	850
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	311, 543, 767
BtsIMutI	CAGTG	2 cut(s)	47, 553
Cac8I	GCNNGC	2 cut(s)	131, 446
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	144, 245
Csp6I	GTAC	1 cut(s)	615
CspAI	ACCGGT	1 cut(s)	611
CviAII	CATG	3 cut(s)	18, 236, 266
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	3 cut(s)	125, 179, 686
DpnI	GATC	5 cut(s)	240, 360, 543, 569, 647
DpnII	GATC	5 cut(s)	238, 358, 541, 567, 645
DraI	TTTAAA	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco47I	GGWCC	2 cut(s)	144, 245
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	384
FaeI	CATG	3 cut(s)	21, 239, 269
FatI	CATG	3 cut(s)	17, 235, 265
FbaI	TGATCA	2 cut(s)	238, 567
FokI	GGATG	3 cut(s)	318, 550, 754
FspBI	CTAG	2 cut(s)	350, 738
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	133, 397, 849
HapII	CCGG	1 cut(s)	612
Hin1II	CATG	3 cut(s)	21, 239, 269
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	5 cut(s)	284, 516, 754, 784, 831
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	3 cut(s)	100, 147, 420
Hpy188I	TCNGA	3 cut(s)	414, 656, 789
Hpy188III	TCNNGA	3 cut(s)	374, 685, 738
Hpy8I	GTNNAC	3 cut(s)	100, 147, 420
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	5 cut(s)	36, 224, 661, 669, 868
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	7 cut(s)	45, 231, 298, 309, 382, 444, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	3 cut(s)	125, 179, 686
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	21, 239, 269
Ksp22I	TGATCA	2 cut(s)	238, 567
Kzo9I	GATC	5 cut(s)	238, 358, 541, 567, 645
LmnI	GCTCC	1 cut(s)	625
LweI	GCATC	3 cut(s)	296, 369, 886
MaeI	CTAG	2 cut(s)	350, 738
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	810
MalI	GATC	5 cut(s)	240, 360, 543, 569, 647
MboI	GATC	5 cut(s)	238, 358, 541, 567, 645
MboII	GAAGA	3 cut(s)	788, 818, 851
MflI	RGATCY	2 cut(s)	358, 541
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	3 cut(s)	316, 391, 586
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	81, 355, 427, 528, 531, 599, 659
Mph1103I	ATGCAT	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	2 cut(s)	14, 873
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	5 cut(s)	238, 358, 541, 567, 645
NlaIII	CATG	3 cut(s)	21, 239, 269
NlaIV	GGNNCC	2 cut(s)	543, 610
NsiI	ATGCAT	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	284, 516, 784, 831
PinAI	ACCGGT	1 cut(s)	611
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
Psp1406I	AACGTT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	543, 610
PspPI	GGNCC	2 cut(s)	144, 245
PspXI	VCTCGAGB	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	358, 541
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	14, 873
Sau3AI	GATC	5 cut(s)	238, 358, 541, 567, 645
Sau96I	GGNCC	2 cut(s)	144, 245
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	3 cut(s)	296, 369, 886
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	144, 245
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	68, 118
SmoI	CTYRAG	2 cut(s)	68, 118
Sse9I	AATT	3 cut(s)	316, 391, 586
SspMI	CTAG	2 cut(s)	350, 738
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	5 cut(s)	36, 224, 661, 669, 868
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	69, 404
TasI	AATT	3 cut(s)	316, 391, 586
TfiI	GAWTC	4 cut(s)	284, 516, 784, 831
Tru1I	TTAA	2 cut(s)	14, 873
Tru9I	TTAA	2 cut(s)	14, 873
TscAI	CASTG	2 cut(s)	47, 553
TspDTI	ATGAA	4 cut(s)	148, 354, 694, 852
TspRI	CASTG	2 cut(s)	47, 553
VpaK11BI	GGWCC	2 cut(s)	144, 245
XapI	RAATTY	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	737
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	2 cut(s)	350, 738
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.