RchiOBHm_Chr5g0077671

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
83569559 .. 83571384
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35223

Sequence Viewer

Length: 1695 bp
ATGGCTTTTAAACAACCATATCCTTCATATTTTCTTCATATCCTTCTACTGCTACCATGTTCCATCTTTGCTCAAACTCATATATCATTAGGCTCATCCCTTACTGCACTAAATGATAACTCATCCTGGCCATCACCATCTGGTGATTTTGCTTTTGGCTTCCGAAAAATTGGAGAAGATGGCTTCCTATTAGCCATCTGGTTCAATAAAGTGAAAGAAAGAACTATTGCCTGGTCAGCCAATGGTAACAATCTAGTGCCTGAGGGATCCAAAGTTGAATTTACCAGTGATGGCAAGTTTATATTGAATGATGTGACAGGGAAACTAATATGGATGCCTGAATCTTCTGCTACTGGAGTTGCATTTGCAGCCATGCTCGACACAGGAAATTTTGTGTTGGTTGACCTCAATTCAATCAATTTGTGGGAGAGTTTTGATGTACCAACTGACACAATCCTACCAACACAGACTCTAAACAGCACCCTCCATGCTCGCTTGTCAGTAGCAAATTACTCAAGAGGGAGATTCCTGTTTAAACTAGGATATGATGGAAATCTCTTGCTTTCCACCACATATTTCCCTCTGGATTCTGAAAACTTTGCTTATTGGTCCACCCCAACAGAGTTGAACAGTGGCTTTCTGGCCATCTTCAACCAGTCTGGTTCTCTTTACCTGATATCCAAGAATGGAAGCATACTTAACATAGTTTTTCCTAATACAGTTTCCGTGCAAGATTTCTACCACAGAGCAACTCTAGAGTATGATGGAGTTTTGAGGCACTATGTTTACCCTAAAAGCACCAGCTCAAGTCTTAGCTGGCCTATGGCTTGGTCCACTCTGTCTTTCATACCTTCAAATATATGCCTGAGTATTCGTGGATATACAGGCTTTGGTGCTTGTGGGTTCAACAGTATTTGCAGACATGATCAAGGACCAATCTGTGAGTGCCCACATGGCTATACCTTTATCGATTCAAATGATATGCTCAAAGGATGCAAACAGAATTTTGTTCCACAACATTGCGATGAAGCCTCACTAGATATGAATCTTTTTGATTTTCAAGAGATGCAAAGCACAAATTGGCCTAATTCGGTTTATCAGAAGTTTACACCGAGAATCCCTCTTTTGAATGGGAGGATGGATCCCAGTGTTGGTGGAAAAGCTCTGATCAAAATAAGGAAAAACAATTCTACTTCGATTCCTGGAGGCACCAATACGAAAAGGAAGCATAAGTATTCAACTTTGATCCTCATCGGAACAATTCTCCTGTGTAGCTTGGTTTTCCTGAGCTTCCTCATACCATTCATAACCTATATGGTTGTTTCTTGTATTTATTCTAGAAAAGGAAAGGAAGCTACAAATGGATTCAAGGAAGAAATACGCCGTGGTGCTTCTGCAACTGTTTTTAAAGGACTTCTAGCGTTTGATGATGCAAAATGTATTGCTGTCAAAAGATTGAGCACTATGGTTGGAGAAAATGAGTTAGAATTCAAAGCTGAAGTGTGTGCAATTGCGAGAACAAATCACAGAAATTTAGTTAAACTAATAGGCTTCTGCAATGAGGGACAGCACCGGCTTCTTGCATATGAGTTTATGAGCAATGGCTCTCTAGCAACCTTCCTCTTTGGAGAGTCAGGACCAAACTGGAAAAGCAGAAACCAAATTGCATTAGGAGTTTCTCAGGGGCTCTTATAA

Protein Analysis

564

Amino Acids

62.69

Weight (kDa)

8.44

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 75 - 165 8.4e-14 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 456 - 562 2.1e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 457 - 545 4e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1693
AccB1I GGYRCC 1 cut(s) 1208
AclWI GGATC 5 cut(s) 261, 274, 1136, 1149, 1240
AcoI YGGCCR 2 cut(s) 128, 642
AcsI RAATTY 5 cut(s) 278, 388, 1003, 1487, 1531
AcuI CTGAAG 1 cut(s) 1518
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 1151
AjnI CCWGG 3 cut(s) 125, 230, 1201
AluBI AGCT 7 cut(s) 804, 816, 1163, 1275, 1290, 1355, 1496
AluI AGCT 7 cut(s) 804, 816, 1163, 1275, 1290, 1355, 1496
Alw21I GWGCWC 1 cut(s) 1463
AlwI GGATC 5 cut(s) 261, 274, 1136, 1149, 1240
AoxI GGCC 4 cut(s) 128, 642, 818, 1082
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 5 cut(s) 278, 388, 1003, 1487, 1531
AspS9I GGNCC 4 cut(s) 609, 831, 932, 1637
AsuHPI GGTGA 2 cut(s) 126, 155
AvaII GGWCC 4 cut(s) 609, 831, 932, 1637
AxyI CCTNAGG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 950
BalI TGGCCA 2 cut(s) 130, 644
BamHI GGATCC 2 cut(s) 266, 1141
BanI GGYRCC 1 cut(s) 1208
BanII GRGCYC 1 cut(s) 1689
Bbv12I GWGCWC 1 cut(s) 1463
BbvI GCAGC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 1368
BciT130I CCWGG 3 cut(s) 127, 232, 1203
BclI TGATCA 2 cut(s) 925, 1167
BfaI CTAG 7 cut(s) 254, 539, 755, 1037, 1338, 1418, 1610
BglI GCCNNNNNGGC 1 cut(s) 954
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 3 cut(s) 127, 232, 1203
Bme18I GGWCC 4 cut(s) 609, 831, 932, 1637
BmgT120I GGNCC 4 cut(s) 609, 831, 932, 1637
BmiI GGNNCC 3 cut(s) 268, 1143, 1210
BmrFI CCNGG 3 cut(s) 127, 232, 1203
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 4 cut(s) 324, 983, 1056, 1420
BmuI ACTGGG 1 cut(s) 1140
BplI GAGNNNNNCTC 2 cut(s) 1105, 1137
BpmI CTGGAG 2 cut(s) 375, 1224
Bpu10I CCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 2 cut(s) 499, 790
Bsa29I ATCGAT 1 cut(s) 969
BsaBI GATNNNNATC 3 cut(s) 552, 1044, 1250
BsaJI CCNNGG 1 cut(s) 1384
Bsc4I CCNNNNNNNGG 1 cut(s) 1151
Bse118I RCCGGY 1 cut(s) 1572
Bse1I ACTGG 5 cut(s) 285, 358, 655, 1146, 1649
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 3 cut(s) 1018, 1564, 1606
Bse8I GATNNNNATC 3 cut(s) 552, 1044, 1250
BseBI CCWGG 3 cut(s) 127, 232, 1203
BseCI ATCGAT 1 cut(s) 969
BseDI CCNNGG 1 cut(s) 1384
BseGI GGATG 5 cut(s) 95, 122, 339, 998, 1143
BseJI GATNNNNATC 3 cut(s) 552, 1044, 1250
BseLI CCNNNNNNNGG 1 cut(s) 1151
BseMI GCAATG 3 cut(s) 1018, 1564, 1606
BseMII CTCAG 4 cut(s) 252, 857, 1277, 1694
BseNI ACTGG 5 cut(s) 285, 358, 655, 1146, 1649
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 4 cut(s) 130, 644, 820, 1084
BshNI GGYRCC 1 cut(s) 1208
BshVI ATCGAT 1 cut(s) 969
BsiHKAI GWGCWC 1 cut(s) 1463
BsiSI CCGG 1 cut(s) 1573
BslFI GGGAC 1 cut(s) 1578
BslI CCNNNNNNNGG 1 cut(s) 1151
BsmFI GGGAC 1 cut(s) 1578
BsnI GGCC 4 cut(s) 130, 644, 820, 1084
Bsp1286I GDGCHC 3 cut(s) 950, 1463, 1689
Bsp143I GATC 5 cut(s) 266, 925, 1141, 1167, 1245
BspANI GGCC 4 cut(s) 130, 644, 820, 1084
BspCNI CTCAG 4 cut(s) 253, 858, 1278, 1693
BspDI ATCGAT 1 cut(s) 969
BspLI GGNNCC 3 cut(s) 268, 1143, 1210
BspPI GGATC 5 cut(s) 261, 274, 1136, 1149, 1240
BspT107I GGYRCC 1 cut(s) 1208
BsrDI GCAATG 3 cut(s) 1018, 1564, 1606
BsrFI RCCGGY 1 cut(s) 1572
BsrI ACTGG 5 cut(s) 285, 358, 655, 1146, 1649
BssAI RCCGGY 1 cut(s) 1572
BssECI CCNNGG 1 cut(s) 1384
BssMI GATC 5 cut(s) 266, 925, 1141, 1167, 1245
Bst2UI CCWGG 3 cut(s) 127, 232, 1203
Bst4CI ACNGT 4 cut(s) 632, 721, 911, 1402
BstC8I GCNNGC 2 cut(s) 493, 818
BstDEI CTNAG 5 cut(s) 261, 812, 866, 1286, 1680
BstDSI CCRYGG 1 cut(s) 1384
BstF5I GGATG 5 cut(s) 95, 122, 339, 998, 1143
BstKTI GATC 5 cut(s) 269, 928, 1144, 1170, 1248
BstMBI GATC 5 cut(s) 266, 925, 1141, 1167, 1245
BstMWI GCNNNNNNNGC 3 cut(s) 236, 368, 954
BstNI CCWGG 3 cut(s) 127, 232, 1203
BstSCI CCNGG 3 cut(s) 125, 230, 1201
BstSLI GKGCMC 1 cut(s) 950
BstV1I GCAGC 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 266, 1141
BstYI RGATCY 2 cut(s) 266, 1141
Bsu15I ATCGAT 1 cut(s) 969
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 4 cut(s) 130, 644, 820, 1084
BsuTUI ATCGAT 1 cut(s) 969
BtgI CCRYGG 1 cut(s) 1384
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 5 cut(s) 95, 122, 339, 998, 1143
BtsIMutI CAGTG 3 cut(s) 292, 637, 1153
Cac8I GCNNGC 2 cut(s) 493, 818
Cfr10I RCCGGY 1 cut(s) 1572
Cfr13I GGNCC 4 cut(s) 609, 831, 932, 1637
ClaI ATCGAT 1 cut(s) 969
Csp6I GTAC 1 cut(s) 440
CviAII CATG 5 cut(s) 57, 373, 488, 923, 953
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 5 cut(s) 261, 812, 866, 1286, 1680
DpnI GATC 5 cut(s) 268, 927, 1143, 1169, 1247
DpnII GATC 5 cut(s) 266, 925, 1141, 1167, 1245
DraI TTTAAA 3 cut(s) 10, 535, 1408
EaeI YGGCCR 2 cut(s) 128, 642
Eco24I GRGCYC 1 cut(s) 1689
Eco32I GATATC 1 cut(s) 678
Eco47I GGWCC 4 cut(s) 609, 831, 932, 1637
Eco57I CTGAAG 1 cut(s) 1518
Eco81I CCTNAGG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 1487
EcoRII CCWGG 3 cut(s) 125, 230, 1201
EcoRV GATATC 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 1689
FaeI CATG 5 cut(s) 60, 376, 491, 926, 956
FaqI GGGAC 1 cut(s) 1578
FatI CATG 5 cut(s) 56, 372, 487, 922, 952
FauNDI CATATG 1 cut(s) 1585
FbaI TGATCA 2 cut(s) 925, 1167
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 5 cut(s) 82, 109, 346, 1005, 1150
FriOI GRGCYC 1 cut(s) 1689
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 7 cut(s) 254, 539, 755, 1037, 1338, 1418, 1610
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 375, 1224
HaeIII GGCC 4 cut(s) 130, 644, 820, 1084
HapII CCGG 1 cut(s) 1573
Hin1II CATG 5 cut(s) 60, 376, 491, 926, 956
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 1573
HphI GGTGA 2 cut(s) 126, 155
Hpy166II GTNNAC 5 cut(s) 403, 612, 787, 834, 1107
Hpy188I TCNGA 5 cut(s) 164, 592, 1101, 1167, 1256
Hpy188III TCNNGA 7 cut(s) 516, 584, 755, 1061, 1285, 1338, 1635
Hpy8I GTNNAC 5 cut(s) 403, 612, 787, 834, 1107
HpyAV CCTTC 4 cut(s) 33, 53, 861, 1627
HpyCH4III ACNGT 4 cut(s) 632, 721, 911, 1402
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 368, 954
HpyF3I CTNAG 5 cut(s) 261, 812, 866, 1286, 1680
Hsp92II CATG 5 cut(s) 60, 376, 491, 926, 956
Ksp22I TGATCA 2 cut(s) 925, 1167
Kzo9I GATC 5 cut(s) 266, 925, 1141, 1167, 1245
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 4 cut(s) 324, 983, 1056, 1420
MaeI CTAG 7 cut(s) 254, 539, 755, 1037, 1338, 1418, 1610
MaeIII GTNAC 2 cut(s) 245, 313
MalI GATC 5 cut(s) 268, 927, 1143, 1169, 1247
MboI GATC 5 cut(s) 266, 925, 1141, 1167, 1245
MboII GAAGA 5 cut(s) 26, 188, 336, 640, 1385
MfeI CAATTG 1 cut(s) 1509
MflI RGATCY 2 cut(s) 266, 1141
MhlI GDGCHC 3 cut(s) 950, 1463, 1689
MlsI TGGCCA 2 cut(s) 130, 644
MluNI TGGCCA 2 cut(s) 130, 644
MlyI GAGTC 2 cut(s) 463, 1640
MmeI TCCRAC 1 cut(s) 1450
Mox20I TGGCCA 2 cut(s) 130, 644
MscI TGGCCA 2 cut(s) 130, 644
MseI TTAA 5 cut(s) 9, 534, 699, 1407, 1539
MslI CAYNNNNRTG 1 cut(s) 1023
Msp20I TGGCCA 2 cut(s) 130, 644
MspI CCGG 1 cut(s) 1573
MspR9I CCNGG 3 cut(s) 127, 232, 1203
MssI GTTTAAAC 1 cut(s) 535
MunI CAATTG 1 cut(s) 1509
MvaI CCWGG 3 cut(s) 127, 232, 1203
MwoI GCNNNNNNNGC 3 cut(s) 236, 368, 954
NdeI CATATG 1 cut(s) 1585
NdeII GATC 5 cut(s) 266, 925, 1141, 1167, 1245
NlaIII CATG 5 cut(s) 60, 376, 491, 926, 956
NlaIV GGNNCC 3 cut(s) 268, 1143, 1210
NmuCI GTSAC 1 cut(s) 313
PfeI GAWTC 8 cut(s) 341, 525, 587, 971, 1045, 1116, 1198, 1365
PfoI TCCNGGA 1 cut(s) 1201
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 2 cut(s) 463, 1639
PmeI GTTTAAAC 1 cut(s) 535
PpsI GAGTC 2 cut(s) 463, 1639
PsiI TTATAA 1 cut(s) 1693
Psp6I CCWGG 3 cut(s) 125, 230, 1201
PspGI CCWGG 3 cut(s) 125, 230, 1201
PspN4I GGNNCC 3 cut(s) 268, 1143, 1210
PspPI GGNCC 4 cut(s) 609, 831, 932, 1637
PsuI RGATCY 2 cut(s) 266, 1141
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 1 cut(s) 1023
SaqAI TTAA 5 cut(s) 9, 534, 699, 1407, 1539
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 5 cut(s) 266, 925, 1141, 1167, 1245
Sau96I GGNCC 4 cut(s) 609, 831, 932, 1637
SchI GAGTC 2 cut(s) 463, 1640
ScrFI CCNGG 3 cut(s) 127, 232, 1203
SduI GDGCHC 3 cut(s) 950, 1463, 1689
SfaNI GCATC 4 cut(s) 324, 983, 1056, 1420
SinI GGWCC 4 cut(s) 609, 831, 932, 1637
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 2 cut(s) 514, 805
SmoI CTYRAG 2 cut(s) 514, 805
SspMI CTAG 7 cut(s) 254, 539, 755, 1037, 1338, 1418, 1610
StyD4I CCNGG 3 cut(s) 125, 230, 1201
TaaI ACNGT 4 cut(s) 632, 721, 911, 1402
TaqI TCGA 3 cut(s) 378, 969, 1196
TfiI GAWTC 8 cut(s) 341, 525, 587, 971, 1045, 1116, 1198, 1365
Tru1I TTAA 5 cut(s) 9, 534, 699, 1407, 1539
Tru9I TTAA 5 cut(s) 9, 534, 699, 1407, 1539
TscAI CASTG 3 cut(s) 292, 637, 1153
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 6 cut(s) 15, 26, 835, 1041, 1058, 1294
TspGWI ACGGA 1 cut(s) 715
TspRI CASTG 3 cut(s) 292, 637, 1153
VpaK11BI GGWCC 4 cut(s) 609, 831, 932, 1637
XapI RAATTY 5 cut(s) 278, 388, 1003, 1487, 1531
XbaI TCTAGA 2 cut(s) 754, 1337
XspI CTAG 7 cut(s) 254, 539, 755, 1037, 1338, 1418, 1610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.