Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83815224 .. 83817038

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG544500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTTTGCACAACATTCTTCCCACTGGATTCTGCAAATTTTGCTTATTGGTCCACCCAAACCAATGTCGGAAATACTGGCTTTCAGGTCATCTTCAACAAGTCTGGCTCTATTTACCTTACAGGCAAGAACGGAAGCATACTTAAAACATTTTTGTCTAATTCAGTTTCAGTCCAGGATTTCTACCACAGAGCAACTCTAGAGTATGATGGAGTTTTGAGGCACTATGTTTACCCCAAAAAGACCAGCCAGCCTATCATGACTTGGTCCAGTCAATCTTTTGAACCTTCAAACATATGTTTGAGAATTGGAGATATAGGAGTTGGTGCTTGTGGGTTCAACAGCTTTTGCAGACTTGATGATCAAAGACCAATCTGTGAGTGCCCCGATGGTTACGCCTTTATTGATCCGAATGATCTTCTTAAAGGATGCAAACAAAACTTTGTTCCTCAAAGTTGTGATGAAGCCTCACCAGAGATGGATCTGTTTGATTTTCAAGATATTGAAGGCACAGATTGGCCTGATTCTAATTATGAGAAGTTTAAGCCCGTAACTGAGGATTGGTGCAGGCAGACTTGTCTTGGTGATTGTTTTTGTGACGTTTTCTACTATGAAAACAATGTCTGTTGGAAGAAGAGAATCCCTCTTTCGAATGGGAGGATGGATCCTAGTTTTGGTGGAAAAGCTCATATCAAAATACGGAAAAACAATTCCACTTTGAAACCTGGAGGCACCAATACGAAAAAGAACAGTTCAACTTTGATCTTCATCGGAACAGTTCTCCTATGTAGCTTGGGTTTTCTGAGCTTTCTCTTACCATTCATAACCTATATGGTTGTTTCTCGTATATATTCTAGAAAAGGAAAGGAGGATCTGTCACTAAGACCTAGCATGAAGAAAGTCACTCTGATGCTTGAAGGAATTATCAAAGTCTCCGCTCCACCAGATCCATCGTCACTTGCAACTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

324

Amino Acids

36.4

Weight (kDa)

7.85

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	731
AccBSI	CCGCTC	1 cut(s)	938
AciI	CCGC	1 cut(s)	936
AclWI	GGATC	6 cut(s)	401, 489, 659, 672, 879, 941
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	174, 724
AluBI	AGCT	4 cut(s)	345, 686, 792, 807
AluI	AGCT	4 cut(s)	345, 686, 792, 807
Alw26I	GTCTC	1 cut(s)	937
AlwI	GGATC	6 cut(s)	401, 489, 659, 672, 879, 941
AoxI	GGCC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	51, 267
AsuHPI	GGTGA	2 cut(s)	462, 596
AsuII	TTCGAA	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	51, 267
BaeGI	GKGCMC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	731
BccI	CCATC	5 cut(s)	203, 383, 472, 655, 958
BciT130I	CCWGG	2 cut(s)	176, 726
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	937
BfaI	CTAG	4 cut(s)	200, 669, 855, 888
Bme1390I	CCNGG	2 cut(s)	176, 726
Bme18I	GGWCC	2 cut(s)	51, 267
BmgT120I	GGNCC	2 cut(s)	51, 267
BmiI	GGNNCC	2 cut(s)	666, 733
BmrFI	CCNGG	2 cut(s)	176, 726
BmsI	GCATC	2 cut(s)	419, 900
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	767
BsaXI	ACNNNNNCTCC	2 cut(s)	860, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse1I	ACTGG	3 cut(s)	30, 82, 270
Bse8I	GATNNNNATC	1 cut(s)	767
BseBI	CCWGG	2 cut(s)	176, 726
BseGI	GGATG	2 cut(s)	434, 666
BseJI	GATNNNNATC	1 cut(s)	767
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMII	CTCAG	2 cut(s)	546, 794
BseNI	ACTGG	3 cut(s)	30, 82, 270
BseSI	GKGCMC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	731
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	1 cut(s)	937
BsnI	GGCC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
BspACI	CCGC	1 cut(s)	936
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	2 cut(s)	547, 795
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	666, 733
BspPI	GGATC	6 cut(s)	401, 489, 659, 672, 879, 941
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	938
BsrI	ACTGG	3 cut(s)	30, 82, 270
BssMI	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
Bst2UI	CCWGG	2 cut(s)	176, 726
Bst4CI	ACNGT	2 cut(s)	752, 778
Bst6I	CTCTTC	1 cut(s)	629
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	251, 569
BstDEI	CTNAG	3 cut(s)	555, 803, 881
BstF5I	GGATG	2 cut(s)	434, 666
BstKTI	GATC	8 cut(s)	364, 409, 418, 484, 667, 765, 874, 949
BstMAI	GTCTC	1 cut(s)	937
BstMBI	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	2 cut(s)	176, 726
BstSCI	CCNGG	2 cut(s)	174, 724
BstSLI	GKGCMC	1 cut(s)	386
BstX2I	RGATCY	4 cut(s)	481, 664, 871, 946
BstYI	RGATCY	4 cut(s)	481, 664, 871, 946
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	434, 666
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	251, 569
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	51, 267
CviAII	CATG	2 cut(s)	259, 892
DdeI	CTNAG	3 cut(s)	555, 803, 881
DpnI	GATC	8 cut(s)	363, 408, 417, 483, 666, 764, 873, 948
DpnII	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco47I	GGWCC	2 cut(s)	51, 267
EcoRII	CCWGG	2 cut(s)	174, 724
FaeI	CATG	2 cut(s)	262, 895
FatI	CATG	2 cut(s)	258, 891
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	361
FokI	GGATG	2 cut(s)	441, 673
FspBI	CTAG	4 cut(s)	200, 669, 855, 888
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	1 cut(s)	520
Hin1II	CATG	2 cut(s)	262, 895
HinfI	GANTC	3 cut(s)	29, 524, 639
HphI	GGTGA	2 cut(s)	462, 596
Hpy166II	GTNNAC	2 cut(s)	54, 232
Hpy188I	TCNGA	5 cut(s)	71, 411, 773, 804, 909
Hpy188III	TCNNGA	4 cut(s)	200, 259, 497, 855
Hpy8I	GTNNAC	2 cut(s)	54, 232
HpyAV	CCTTC	3 cut(s)	297, 500, 911
HpyCH4III	ACNGT	2 cut(s)	752, 778
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	9, 35, 351, 432, 567, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	555, 803, 881
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	262, 895
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
LmnI	GCTCC	1 cut(s)	943
LweI	GCATC	2 cut(s)	419, 900
MaeI	CTAG	4 cut(s)	200, 669, 855, 888
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	6 cut(s)	392, 550, 596, 876, 901, 954
MalI	GATC	8 cut(s)	363, 408, 417, 483, 666, 764, 873, 948
MbiI	CCGCTC	1 cut(s)	938
MboI	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
MboII	GAAGA	7 cut(s)	10, 85, 410, 643, 646, 757, 907
MflI	RGATCY	4 cut(s)	481, 664, 871, 946
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	7 cut(s)	37, 160, 306, 529, 709, 921, 970
MmeI	TCCRAC	2 cut(s)	49, 608
MnlI	CCTC	8 cut(s)	213, 459, 478, 550, 651, 654, 722, 862
MseI	TTAA	4 cut(s)	144, 423, 543, 973
MslI	CAYNNNNRTG	1 cut(s)	908
MspR9I	CCNGG	2 cut(s)	176, 726
MvaI	CCWGG	2 cut(s)	176, 726
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
NlaIII	CATG	2 cut(s)	262, 895
NlaIV	GGNNCC	2 cut(s)	666, 733
NmuCI	GTSAC	4 cut(s)	596, 876, 901, 954
NspV	TTCGAA	1 cut(s)	650
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	29, 524, 639
PflFI	GACNNNGTC	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	174, 724
PspGI	CCWGG	2 cut(s)	174, 724
PspN4I	GGNNCC	2 cut(s)	666, 733
PspPI	GGNCC	2 cut(s)	51, 267
PsuI	RGATCY	4 cut(s)	481, 664, 871, 946
PsyI	GACNNNGTC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	144, 423, 543, 973
Sau3AI	GATC	8 cut(s)	361, 406, 415, 481, 664, 762, 871, 946
Sau96I	GGNCC	2 cut(s)	51, 267
ScrFI	CCNGG	2 cut(s)	176, 726
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	2 cut(s)	419, 900
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	2 cut(s)	51, 267
SmiMI	CAYNNNNRTG	1 cut(s)	908
Sse9I	AATT	7 cut(s)	37, 160, 306, 529, 709, 921, 970
SsiI	CCGC	1 cut(s)	936
SspMI	CTAG	4 cut(s)	200, 669, 855, 888
StyD4I	CCNGG	2 cut(s)	174, 724
TaaI	ACNGT	2 cut(s)	752, 778
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	37, 160, 306, 529, 709, 921, 970
TfiI	GAWTC	3 cut(s)	29, 524, 639
Tru1I	TTAA	4 cut(s)	144, 423, 543, 973
Tru9I	TTAA	4 cut(s)	144, 423, 543, 973
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	4 cut(s)	596, 876, 901, 954
Tsp45I	GTSAC	4 cut(s)	596, 876, 901, 954
TspDTI	ATGAA	5 cut(s)	477, 627, 757, 811, 908
TspGWI	ACGGA	2 cut(s)	147, 715
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	51, 267
XapI	RAATTY	1 cut(s)	37
XbaI	TCTAGA	2 cut(s)	199, 854
XspI	CTAG	4 cut(s)	200, 669, 855, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.