Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83486039 .. 83486239

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTTCTTTATGCTTTCTGTTTCTCCTTCTACAACTTTCATTTTACACCATTTTGCTGATACTTACCAGAATATATCTTTGGGATCATCCCTCACTGCAACGGATGATAACTCTTCTTGGTCCTCTCCATCTGGGGAATTTTCCTTTGGTTTCCAAAAGCTTGGTAATGATGGCTTCATATTAGCCATCTGGCCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

66

Amino Acids

7.25

Weight (kDa)

4.34

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 129, 161
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	120
BccI	CCATC	3 cut(s)	136, 164, 194
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	193
BseGI	GGATG	2 cut(s)	86, 109
BshFI	GGCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	194
BsnI	GGCC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	86, 109
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	86, 109
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	120
CviJI	RGCY	4 cut(s)	160, 174, 185, 193
CviKI_1	RGCY	4 cut(s)	160, 174, 185, 193
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	120
FaiI	YATR	4 cut(s)	11, 74, 179, 199
FokI	GGATG	2 cut(s)	73, 116
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	80, 117, 175
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	105
MluCI	AATT	1 cut(s)	137
MnlI	CCTC	2 cut(s)	101, 133
MspI	CCGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	120
SetI	ASST	1 cut(s)	162
SgeI	CNNG	4 cut(s)	79, 129, 144, 173
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	137
TasI	AATT	1 cut(s)	137
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	28, 166
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.