Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83814660 .. 83815202

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG544400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTTTAAACAACCATTTTCTTTATGTTTTCTTCATATCCTTCTACTGCTACCATGTTCCATCTTTGCTCAAACTCATATATCATTAGGCTCATTCCTTACTGCACAAAATGATAACTCATCCTGGCCATCACCATCTGGTGACTTTGCTTTTGGCTTCCAAAAAATTGGAGAAGATGGCTTCCTATTAGCCATCTGGTTCAATAAAGTGAAAGAAAGAACTATTGCCTGGTCAGCCAATGGTAACAATCTAGTGTCTGAGGGATCCAAAGTTGAACTTACTAGTGATGGCAAGTTTATGCTGAATGATGCAACTGGTAAACAAATATGGATGGCTGAATCTTCTGGTACTGGAGTTGCCTATGCAGCCATGCTCGACACGGGAAATTTTGTGCTGGTTGACCACAAGTCAATCAATTTGTGGGAGAGTTTTGATGTACCAACTGATACAATCCTACCTACACAGATTCTAAATATAAACAGCACACTCTACGCCCGATTTTCAGCTTCAAATTACTCAAAAGGAAGGTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

180

Amino Acids

19.92

Weight (kDa)

5.51

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	75 - 163	1.7e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 274
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	2 cut(s)	352, 441
AgsI	TTSAA	3 cut(s)	205, 278, 513
AhdI	GACNNNNNGTC	1 cut(s)	409
AhlI	ACTAGT	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	125, 230
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AsuHPI	GGTGA	2 cut(s)	126, 155
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BalI	TGGCCA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	7 cut(s)	71, 139, 145, 173, 203, 284, 328
BciT130I	CCWGG	2 cut(s)	127, 232
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	254, 285
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	127, 232
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	127, 232
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	322, 358
BseBI	CCWGG	2 cut(s)	127, 232
BseGI	GGATG	2 cut(s)	122, 339
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	322, 358
BseXI	GCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	261, 274
BsrI	ACTGG	2 cut(s)	322, 358
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	127, 232
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	122, 339
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 368
BstNI	CCWGG	2 cut(s)	127, 232
BstSCI	CCNGG	2 cut(s)	125, 230
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	122, 339
Csp6I	GTAC	2 cut(s)	351, 440
CviAII	CATG	2 cut(s)	57, 373
CviQI	GTAC	2 cut(s)	351, 440
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DraI	TTTAAA	1 cut(s)	10
DriI	GACNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	125, 230
FaeI	CATG	2 cut(s)	60, 376
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	2 cut(s)	56, 372
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	109, 346
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	254, 285
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	60, 376
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	341, 469
HphI	GGTGA	2 cut(s)	126, 155
Hpy166II	GTNNAC	2 cut(s)	323, 403
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	323, 403
HpyAV	CCTTC	2 cut(s)	53, 522
HpyCH4V	TGCA	3 cut(s)	107, 314, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 368
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	60, 376
Kzo9I	GATC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	254, 285
MaeIII	GTNAC	2 cut(s)	143, 245
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	3 cut(s)	26, 188, 336
MflI	RGATCY	1 cut(s)	266
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	4 cut(s)	168, 388, 418, 514
MluNI	TGGCCA	1 cut(s)	130
MnlI	CCTC	1 cut(s)	256
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	2 cut(s)	9, 541
Msp20I	TGGCCA	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	127, 232
MvaI	CCWGG	2 cut(s)	127, 232
MwoI	GCNNNNNNNGC	2 cut(s)	236, 368
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	60, 376
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	341, 469
PkrI	GCNGC	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	125, 230
PspGI	CCWGG	2 cut(s)	125, 230
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	352, 441
RsaNI	GTAC	2 cut(s)	351, 440
SaqAI	TTAA	2 cut(s)	9, 541
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	127, 232
SetI	ASST	3 cut(s)	463, 511, 533
SfaNI	GCATC	1 cut(s)	301
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	4 cut(s)	168, 388, 418, 514
SspMI	CTAG	2 cut(s)	254, 285
StyD4I	CCNGG	2 cut(s)	125, 230
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	168, 388, 418, 514
TfiI	GAWTC	2 cut(s)	341, 469
Tru1I	TTAA	2 cut(s)	9, 541
Tru9I	TTAA	2 cut(s)	9, 541
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	26
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	2 cut(s)	254, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.