Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004277.1

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

67939 .. 69380

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004277.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgtttaccctaaaagcaccagctcaagtcttaggtcttagctggcctatggcttggtccactctgtctttcataccttcaaatatttgcctgagtattcgtggatatacaggctttggtgcttgtgggttcaacagtatttgcagacatgatcaaggaccaatctgtgagtgcccacatggctatacctttatcgattcaaatgatatgctcaaaggatgcaaacagaatttagttccacaacgttgcgatgaagcctcactagatatgaatcttttttattttcaagagatgcaaagcacaaattcggtttatcagaagtttacaccggtaactgaggaatggtgcaggcagagttatcttggtgattgtttctgtgatgttttctacgacaaaaacaatggctgttggaagcagagaatccctcttttgaatgggaggatggatcccagtgttggtggaaaagctctgatcaaaataaggaaaaacaattctacttcgattcctggaggcaccaatacgaaaaggaagcataagtattcaactttgatcctcatcggaacaattctcctgtgtagcttggagttacaggaagctacaaatggattcaaggaagaaatacgccgtggtgcttctgcaactgtttttaaaggactttcagcgtttgatgatgcaaaatgtattgctgtcaaaagattgagcactatggttggagaaaatgagtttgaattcaaagctgaagtgtgtgcaattgcgagaacaaatcacagaaatttagttaaactaataggcttctgcaatgagggacagcaccggcttcttgcatatgacagccaaattgtacattgcgacattaagcctcaaaacattcttctagatgactccttcacagcaagaatctccgattttggactagccaagcttttgagaacagaccagactcaaaccacaacgggaatcaggggaacaagagggtatgtggcaactgaatggttcaaaaacacacctatcacagtgaaggtggatgtttacagctatggcattttgttattagagattatttgctgcagaaatcattttgaagaacatgctgagaatgaagatcaaatgatactagctgattgggcctctgattgctacaaccaaattaaattgcatctgttagtagagaatgatcatgaggcaatgaacaacatcacaaatgtggagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

404

Amino Acids

45.65

Weight (kDa)

6.56

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	3 cut(s)	440, 453, 544
AcsI	RAATTY	4 cut(s)	229, 304, 728, 772
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgeI	ACCGGT	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	505
AleI	CACNNNNGTG	1 cut(s)	1202
AluBI	AGCT	9 cut(s)	23, 42, 467, 579, 596, 737, 922, 1035, 1118
AluI	AGCT	9 cut(s)	23, 42, 467, 579, 596, 737, 922, 1035, 1118
Alw21I	GWGCWC	1 cut(s)	704
AlwI	GGATC	3 cut(s)	440, 453, 544
AoxI	GGCC	2 cut(s)	44, 1125
ApeKI	GCWGC	1 cut(s)	1065
ApoI	RAATTY	4 cut(s)	229, 304, 728, 772
AsiGI	ACCGGT	1 cut(s)	328
AspS9I	GGNCC	3 cut(s)	57, 158, 1125
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	57, 158
BaeGI	GKGCMC	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	1 cut(s)	1052
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	1 cut(s)	507
BclI	TGATCA	3 cut(s)	151, 471, 1174
BfaI	CTAG	4 cut(s)	263, 875, 914, 1115
BfmI	CTRYAG	1 cut(s)	1066
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	1066
BlsI	GCNGC	1 cut(s)	1067
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	2 cut(s)	57, 158
BmgT120I	GGNCC	3 cut(s)	57, 158, 1125
BmiI	GGNNCC	2 cut(s)	447, 514
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	4 cut(s)	209, 282, 661, 1165
BmuI	ACTGGG	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	2 cut(s)	270, 554
BsaJI	CCNNGG	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	2 cut(s)	328, 813
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	3 cut(s)	805, 844, 1191
Bse8I	GATNNNNATC	2 cut(s)	270, 554
BseBI	CCWGG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	3 cut(s)	224, 447, 1030
BseJI	GATNNNNATC	2 cut(s)	270, 554
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	3 cut(s)	805, 844, 1191
BseMII	CTCAG	3 cut(s)	83, 327, 1083
BseNI	ACTGG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	1052
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	46, 1127
BshNI	GGYRCC	1 cut(s)	512
BshTI	ACCGGT	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	329, 814
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	46, 1127
Bsp1286I	GDGCHC	2 cut(s)	176, 704
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
BspANI	GGCC	2 cut(s)	46, 1127
BspCNI	CTCAG	3 cut(s)	84, 328, 1084
BspDI	ATCGAT	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	1177
BspLI	GGNNCC	2 cut(s)	447, 514
BspMAI	CTGCAG	1 cut(s)	1070
BspPI	GGATC	3 cut(s)	440, 453, 544
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	3 cut(s)	805, 844, 1191
BsrFI	RCCGGY	2 cut(s)	328, 813
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	2 cut(s)	328, 813
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	137, 643, 1015
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	44, 350
BstDEI	CTNAG	5 cut(s)	31, 38, 92, 336, 1092
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	3 cut(s)	224, 447, 1030
BstKTI	GATC	6 cut(s)	154, 448, 474, 552, 1105, 1177
BstMBI	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 1124
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	1066
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	1052
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	46, 1127
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	224, 447, 1030
BtsIMutI	CAGTG	2 cut(s)	457, 1020
Cac8I	GCNNGC	2 cut(s)	44, 350
CciI	TCATGA	1 cut(s)	1177
Cfr10I	RCCGGY	2 cut(s)	328, 813
Cfr13I	GGNCC	3 cut(s)	57, 158, 1125
ClaI	ATCGAT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	842
CspAI	ACCGGT	1 cut(s)	328
CviAII	CATG	4 cut(s)	149, 179, 1088, 1178
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	5 cut(s)	31, 38, 92, 336, 1092
DpnI	GATC	6 cut(s)	153, 447, 473, 551, 1104, 1176
DpnII	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
DraI	TTTAAA	1 cut(s)	649
Eco47I	GGWCC	2 cut(s)	57, 158
Eco57I	CTGAAG	1 cut(s)	759
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	505
FaeI	CATG	4 cut(s)	152, 182, 1091, 1181
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	4 cut(s)	148, 178, 1087, 1177
FauNDI	CATATG	1 cut(s)	826
FbaI	TGATCA	3 cut(s)	151, 471, 1174
Fnu4HI	GCNGC	1 cut(s)	1066
FokI	GGATG	3 cut(s)	231, 454, 1037
Fsp4HI	GCNGC	1 cut(s)	1066
FspBI	CTAG	4 cut(s)	263, 875, 914, 1115
GluI	GCNGC	1 cut(s)	1066
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	46, 1127
HapII	CCGG	2 cut(s)	329, 814
Hin1II	CATG	4 cut(s)	152, 182, 1091, 1181
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	9 cut(s)	197, 271, 420, 502, 606, 881, 897, 940, 957
HpaII	CCGG	2 cut(s)	329, 814
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	4 cut(s)	6, 60, 324, 1030
Hpy188I	TCNGA	5 cut(s)	318, 471, 560, 904, 1132
Hpy188III	TCNNGA	3 cut(s)	287, 875, 1178
Hpy8I	GTNNAC	4 cut(s)	6, 60, 324, 1030
HpyAV	CCTTC	3 cut(s)	87, 895, 1012
HpyCH4III	ACNGT	3 cut(s)	137, 643, 1015
HpyCH4IV	ACGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 1124
HpyF3I	CTNAG	5 cut(s)	31, 38, 92, 336, 1092
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	152, 182, 1091, 1181
Ksp22I	TGATCA	3 cut(s)	151, 471, 1174
Kzo9I	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
Lsp1109I	GCAGC	1 cut(s)	1052
LweI	GCATC	4 cut(s)	209, 282, 661, 1165
MaeI	CTAG	4 cut(s)	263, 875, 914, 1115
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	331, 585
MalI	GATC	6 cut(s)	153, 447, 473, 551, 1104, 1176
MboI	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
MboII	GAAGA	4 cut(s)	626, 863, 1094, 1112
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	176, 704
MlyI	GAGTC	2 cut(s)	875, 934
MmeI	TCCRAC	2 cut(s)	389, 691
MseI	TTAA	4 cut(s)	648, 780, 855, 1149
MslI	CAYNNNNRTG	1 cut(s)	1202
MspI	CCGG	2 cut(s)	329, 814
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	180, 1124
NdeI	CATATG	1 cut(s)	826
NdeII	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
NlaIII	CATG	4 cut(s)	152, 182, 1091, 1181
NlaIV	GGNNCC	2 cut(s)	447, 514
NspI	RCATGY	1 cut(s)	1091
OliI	CACNNNNGTG	1 cut(s)	1202
PagI	TCATGA	1 cut(s)	1177
PfeI	GAWTC	7 cut(s)	197, 271, 420, 502, 606, 897, 957
PfoI	TCCNGGA	1 cut(s)	505
PinAI	ACCGGT	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	1067
PleI	GAGTC	2 cut(s)	875, 934
PpsI	GAGTC	2 cut(s)	875, 934
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	447, 514
PspPI	GGNCC	3 cut(s)	57, 158, 1125
PstI	CTGCAG	1 cut(s)	1070
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	1 cut(s)	1202
SaqAI	TTAA	4 cut(s)	648, 780, 855, 1149
SatI	GCNGC	1 cut(s)	1066
Sau3AI	GATC	6 cut(s)	151, 445, 471, 549, 1102, 1174
Sau96I	GGNCC	3 cut(s)	57, 158, 1125
SchI	GAGTC	2 cut(s)	875, 934
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	176, 704
SfaNI	GCATC	4 cut(s)	209, 282, 661, 1165
SfcI	CTRYAG	1 cut(s)	1066
SinI	GGWCC	2 cut(s)	57, 158
SmiMI	CAYNNNNRTG	1 cut(s)	1202
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	4 cut(s)	263, 875, 914, 1115
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	137, 643, 1015
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	195, 500
TatI	WGTACW	1 cut(s)	841
TfiI	GAWTC	7 cut(s)	197, 271, 420, 502, 606, 897, 957
Tru1I	TTAA	4 cut(s)	648, 780, 855, 1149
Tru9I	TTAA	4 cut(s)	648, 780, 855, 1149
TscAI	CASTG	2 cut(s)	457, 1020
TseI	GCWGC	1 cut(s)	1065
TspDTI	ATGAA	5 cut(s)	61, 267, 284, 1113, 1202
TspRI	CASTG	2 cut(s)	457, 1020
VpaK11BI	GGWCC	2 cut(s)	57, 158
XapI	RAATTY	4 cut(s)	229, 304, 728, 772
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	1 cut(s)	1091
XspI	CTAG	4 cut(s)	263, 875, 914, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.