Rorug05G0456300

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
62998412 .. 63000219
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0456300.1

Sequence Viewer

Length: 339 bp
ATGTCGTCCAAAACCTACGCCTCTGATGTCCTCCAAGTCTCCTTAATCGAACAGCTGCCAATCACCGCCGCTCTCTCTAAGTTCTTCTTCTACATCCTCTCTCAGAGCCTCGTAGTCGATGTCGCGGACTTCGAGACTCCAAAACGGCGCAGTTTAGATTCCAGAAGCAGTGCGGTTTGGGTTTTGAAGGCCCATGTCATGGAAGAAATGGTCATTTCAACGACCATTGGTATTGATGGAATTTCACTTGCCTCCAAAGAGGCAACTGTTAAAGAGTCATCTGTCATTATTTTTCTTGTTGATGGCCAGGGTGAGATCATAATTTTGATTGAGAATTAG

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

4.7

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 1 cut(s) 125
AciI CCGC 4 cut(s) 66, 69, 125, 173
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 187, 219
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 43, 128
AoxI GGCC 2 cut(s) 189, 304
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 240
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 55, 323
BalI TGGCCA 1 cut(s) 306
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 230, 296
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 43, 128
BisI GCNGC 2 cut(s) 56, 69
BlsI GCNGC 2 cut(s) 57, 70
Bme1390I CCNGG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 191, 306
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 43, 128
BsnI GGCC 2 cut(s) 191, 306
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 4 cut(s) 66, 69, 125, 173
BspANI GGCC 2 cut(s) 191, 306
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 78, 102
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 2 cut(s) 43, 128
BstMBI GATC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 191, 306
BtsCI GGATG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 2 cut(s) 194, 199
CviJI RGCY 4 cut(s) 55, 108, 191, 306
CviKI_1 RGCY 4 cut(s) 55, 108, 191, 306
DdeI CTNAG 2 cut(s) 78, 102
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 197, 202
FaiI YATR 3 cut(s) 195, 200, 320
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 2 cut(s) 193, 198
Fnu4HI GCNGC 2 cut(s) 56, 69
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 56, 69
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 56, 69
HaeIII GGCC 2 cut(s) 191, 306
HhaI GCGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 197, 202
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 3 cut(s) 136, 158, 275
HphI GGTGA 2 cut(s) 55, 323
Hpy188I TCNGA 2 cut(s) 25, 105
Hpy188III TCNNGA 2 cut(s) 133, 162
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 268
HpyF3I CTNAG 2 cut(s) 78, 102
Hsp92II CATG 2 cut(s) 197, 202
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 3 cut(s) 175, 293, 320
Lsp1109I GCAGC 1 cut(s) 42
MalI GATC 1 cut(s) 317
MbiI CCGCTC 1 cut(s) 71
MboI GATC 1 cut(s) 315
MboII GAAGA 3 cut(s) 76, 79, 215
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 3 cut(s) 240, 321, 334
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 2 cut(s) 130, 284
MnlI CCTC 6 cut(s) 31, 41, 107, 119, 253, 262
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 2 cut(s) 44, 270
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 125
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 197, 202
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 2 cut(s) 57, 70
PleI GAGTC 2 cut(s) 130, 283
PpsI GAGTC 2 cut(s) 130, 283
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 55
SaqAI TTAA 2 cut(s) 44, 270
SatI GCNGC 2 cut(s) 56, 69
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 130, 284
ScrFI CCNGG 1 cut(s) 308
SetI ASST 2 cut(s) 17, 57
Sse9I AATT 3 cut(s) 240, 321, 334
SsiI CCGC 4 cut(s) 66, 69, 125, 173
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 48, 117, 132
TasI AATT 3 cut(s) 240, 321, 334
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 44, 270
Tru9I TTAA 2 cut(s) 44, 270
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 55
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 199
XapI RAATTY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.