Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

83558949 .. 83559494

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTTTAAACAACCATATCCTTTATATTTTCTTCATATCCTTCTACTGCTACCATGTTCCATCTTTGCTCAAACTCAGATATCATTAGGCTCAAACCTTACTGCACTAAATGATAACTCATCCTGGCCATCACCATCTGGTGATTTTGCTTTTGGCTTCCGAAAAATTGGAGAAGATGGCTTCCTATTAGCCATCTGGTTCAATAAAGTGAAAGAAAGAACTATTGTCTGGTCAGCCAATGGTAACAATCTAGTGCCTGAGGGATCCAAAGTTGAACTTACCACTGGTGGCAAGTTTATGCTGAATGATGCAACTGGTAAACAAATATGGATGGCTGAATCTTCTGGTACTGGAGTTGCCTATGCAGCAGCCATGCTCGACACGGGAAATTTTGTGCTGGTTGACCTCAATTTAAACAATTTGTGGGAGAGTTTTGATGTACCAACTGATACAATCCTACCTACACAGATTCTAAATAGAAGCATCACACTCTACGCCCCATTTTCAGCTTCAAATTACTCAAAAGGAAGGTTTTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

181

Amino Acids

20.01

Weight (kDa)

5.3

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	75 - 161	9.1e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 274
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	2 cut(s)	352, 444
AgsI	TTSAA	3 cut(s)	205, 278, 516
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	512
AluI	AGCT	1 cut(s)	512
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	368, 371
ApoI	RAATTY	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	126, 155
AxyI	CCTNAGG	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BalI	TGGCCA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	380, 383
BccI	CCATC	6 cut(s)	71, 139, 145, 173, 203, 328
BciT130I	CCWGG	1 cut(s)	127
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	369, 372
BlsI	GCNGC	2 cut(s)	370, 373
Bme1390I	CCNGG	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	301, 495
BpmI	CTGGAG	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	292, 322, 358
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	122, 339
BseMII	CTCAG	2 cut(s)	92, 252
BseNI	ACTGG	3 cut(s)	292, 322, 358
BseXI	GCAGC	2 cut(s)	380, 383
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	91, 253
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	261, 274
BsrI	ACTGG	3 cut(s)	292, 322, 358
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	78, 261
BstF5I	GGATG	2 cut(s)	122, 339
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	380, 383
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	122, 339
BtsIMutI	CAGTG	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	351, 443
CviAII	CATG	2 cut(s)	57, 376
CviQI	GTAC	2 cut(s)	351, 443
DdeI	CTNAG	2 cut(s)	78, 261
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DraI	TTTAAA	2 cut(s)	10, 417
EaeI	YGGCCR	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	84
FaeI	CATG	2 cut(s)	60, 379
FaiI	YATR	8 cut(s)	19, 28, 39, 58, 302, 331, 366, 377
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	2 cut(s)	56, 375
Fnu4HI	GCNGC	2 cut(s)	369, 372
FokI	GGATG	2 cut(s)	109, 346
Fsp4HI	GCNGC	2 cut(s)	369, 372
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	369, 372
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	60, 379
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	341, 472
HphI	GGTGA	2 cut(s)	126, 155
Hpy166II	GTNNAC	2 cut(s)	323, 406
Hpy188I	TCNGA	2 cut(s)	81, 164
Hpy8I	GTNNAC	2 cut(s)	323, 406
HpyAV	CCTTC	2 cut(s)	53, 525
HpyCH4V	TGCA	3 cut(s)	107, 314, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	78, 261
Hsp92II	CATG	2 cut(s)	60, 379
Kzo9I	GATC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	380, 383
LweI	GCATC	2 cut(s)	301, 495
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	3 cut(s)	26, 188, 336
MflI	RGATCY	1 cut(s)	266
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	5 cut(s)	168, 391, 412, 421, 517
MluNI	TGGCCA	1 cut(s)	130
MnlI	CCTC	2 cut(s)	256, 419
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	2 cut(s)	9, 416
Msp20I	TGGCCA	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	60, 379
NlaIV	GGNNCC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	341, 472
PkrI	GCNGC	2 cut(s)	370, 373
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	352, 444
RsaNI	GTAC	2 cut(s)	351, 443
SaqAI	TTAA	2 cut(s)	9, 416
SatI	GCNGC	2 cut(s)	369, 372
Sau3AI	GATC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	5 cut(s)	102, 411, 466, 514, 536
SfaNI	GCATC	2 cut(s)	301, 495
Sse9I	AATT	5 cut(s)	168, 391, 412, 421, 517
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	168, 391, 412, 421, 517
TfiI	GAWTC	2 cut(s)	341, 472
Tru1I	TTAA	2 cut(s)	9, 416
Tru9I	TTAA	2 cut(s)	9, 416
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	368, 371
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	391
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.