Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

84792245 .. 84793396

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTTTTGAACAACAATATTCTATATGCTTTCTGCTTGTCCTTCTACAGCTTCCCTTTTTCACCATTGCTCAAAGTTACAAAAACATATCTTTTAGCTCATCCCTTACTGCACAGGAGGACAGTGACCCTCACCGGGCCTCCCCGTCTGTGGAGTTCGCGTTCGGCTTCAGAAAAATTGGCAATGCCGGCTTCTTACTAGCCATCTGGTTTGAAAATATACAAGAAAAGACTATAGTCTGGTCAGCTAATCGCAATAATCCAGTGCAACAAGGATCGAGAGTTGAATTCTCTGCAGAAGGCGAGCTTAGTCTCACTGATATTGGAACAGGCAAACAAACAAACATTGCTGATGGTCAGTCTAGGGATACTGGAGTTGCCTACGCAGCCATGCTGGACTCGGGAAATTTCGTTCTGGCAACCCGAAATTCAACCTATTTGTGGCAGAGTTTTGATCATCCAACTGATACCATACTTCCCACAGAGATCCTGAATCTAAACAGCAGTCTCTTTGCCCAACTTACAGCAACAAATTACTCAGAAGGAAGATTCAAGTTTACTCTAGATTCTGGTGGAAATCTTACGCTTTATACAATGAATTATCCATGGAAGAGTAATAATTCTCTCTACTGGTCATTTGAAACTGGAGATCCAGTTTCCACTCAAGACGTCTACCAGAGAGCAACTCTTGACTATGATGGAGTTTTGAGGCACTATATGCACCCGAAAATCACCGACTCTTCGAGTGCTTGGTCCTCTTATAACTACATACCTTCAGATATATGCACAGCAATTACGGAGTATACAGGGGGTGGTGCATGTGGGTTTAACAGCTTATGTAAGCATGATGTGGATGCAGCTTATACTAATTGCTCCAGCCCTCCGAGTTACATCCCCGTTGACCAAGATGATGAGAGGAAAGGGTGCAAGCAAAACTTCGTTCCCCAAAGTTGTGATGAAGCCTCATCAGAAACAGACCTCTTTGAAGTACAAGAGCTTCAACACACTAATTGGCCTCGTGGAGATTATGAGCATTTCCTGGAAGTTAATAAGGAACAGTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

356

Amino Acids

39.85

Weight (kDa)

4.61

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 169	1.5e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AatII	GACGTC	1 cut(s)	672
AccI	GTMKAC	2 cut(s)	672, 803
AccII	CGCG	1 cut(s)	161
AclWI	GGATC	3 cut(s)	283, 481, 644
AcsI	RAATTY	3 cut(s)	287, 406, 427
AcuI	CTGAAG	2 cut(s)	154, 759
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	990
AfiI	CCNNNNNNNGG	3 cut(s)	136, 151, 441
AgsI	TTSAA	8 cut(s)	11, 215, 287, 432, 553, 641, 986, 1001
AjnI	CCWGG	1 cut(s)	1038
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 396, 428
AluBI	AGCT	7 cut(s)	52, 99, 248, 307, 834, 860, 997
AluI	AGCT	7 cut(s)	52, 99, 248, 307, 834, 860, 997
Alw26I	GTCTC	2 cut(s)	317, 512
AlwI	GGATC	3 cut(s)	283, 481, 644
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	138, 1013
ApeKI	GCWGC	2 cut(s)	386, 857
ApoI	RAATTY	3 cut(s)	287, 406, 427
AspS9I	GGNCC	2 cut(s)	138, 753
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	55, 125, 724
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
BauI	CACGAG	1 cut(s)	1017
BbvI	GCAGC	2 cut(s)	398, 869
BccI	CCATC	3 cut(s)	212, 347, 692
BciT130I	CCWGG	1 cut(s)	1040
BciVI	GTATCC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	317, 512
BfaI	CTAG	3 cut(s)	200, 363, 563
BfmI	CTRYAG	3 cut(s)	47, 234, 294
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	387, 858
BlsI	GCNGC	2 cut(s)	388, 859
Bme1390I	CCNGG	2 cut(s)	137, 1040
Bme18I	GGWCC	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	138, 753
BmrFI	CCNGG	2 cut(s)	137, 1040
BmsI	GCATC	1 cut(s)	844
BoxI	GACNNNNGTC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	3 cut(s)	393, 666, 859
BpuEI	CTTGAG	1 cut(s)	648
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	605
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 146, 155, 176, 639, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 151, 441
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	5 cut(s)	263, 376, 635, 649, 653
Bse3DI	GCAATG	3 cut(s)	66, 190, 345
BseBI	CCWGG	1 cut(s)	1040
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	4 cut(s)	101, 457, 859, 891
BseLI	CCNNNNNNNGG	3 cut(s)	136, 151, 441
BseMI	GCAATG	3 cut(s)	66, 190, 345
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	5 cut(s)	263, 376, 635, 649, 653
BseXI	GCAGC	2 cut(s)	398, 869
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	140, 1015
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	136, 189
BslI	CCNNNNNNNGG	3 cut(s)	136, 151, 441
BsmAI	GTCTC	2 cut(s)	317, 512
BsnI	GGCC	2 cut(s)	140, 1015
BsoBI	CYCGRG	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	275, 454, 486, 649
Bsp19I	CCATGG	1 cut(s)	605
BspANI	GGCC	2 cut(s)	140, 1015
BspCNI	CTCAG	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	3 cut(s)	283, 481, 644
BsrDI	GCAATG	3 cut(s)	66, 190, 345
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	5 cut(s)	263, 376, 635, 649, 653
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	4 cut(s)	275, 454, 486, 649
BssNAI	GTATAC	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	669
BssSI	CACGAG	1 cut(s)	1017
BssT1I	CCWWGG	1 cut(s)	605
Bst1107I	GTATAC	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	1017
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	2 cut(s)	125, 1059
Bst6I	CTCTTC	2 cut(s)	605, 745
BstACI	GRCGYC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	190, 305, 929
BstDEI	CTNAG	2 cut(s)	308, 538
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	101, 457, 859, 891
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	4 cut(s)	278, 457, 489, 652
BstMAI	GTCTC	2 cut(s)	317, 512
BstMBI	GATC	4 cut(s)	275, 454, 486, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 386, 718
BstNI	CCWGG	1 cut(s)	1040
BstNSI	RCATGY	1 cut(s)	822
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	135, 1038
BstSFI	CTRYAG	3 cut(s)	47, 234, 294
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	398, 869
BstX2I	RGATCY	2 cut(s)	486, 649
BstYI	RGATCY	2 cut(s)	486, 649
BstZ17I	GTATAC	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	140, 1015
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	4 cut(s)	101, 457, 859, 891
BtsIMutI	CAGTG	4 cut(s)	130, 270, 315, 1064
Cac8I	GCNNGC	3 cut(s)	190, 305, 929
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	138, 753
Csp6I	GTAC	1 cut(s)	989
CviAII	CATG	4 cut(s)	391, 606, 819, 845
CviQI	GTAC	1 cut(s)	989
DdeI	CTNAG	2 cut(s)	308, 538
DpnI	GATC	4 cut(s)	277, 456, 488, 651
DpnII	GATC	4 cut(s)	275, 454, 486, 649
Eam1104I	CTCTTC	2 cut(s)	605, 745
EarI	CTCTTC	2 cut(s)	605, 745
Eco130I	CCWWGG	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	154, 759
Eco88I	CYCGRG	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	4 cut(s)	394, 609, 822, 848
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 920, 952
FatI	CATG	4 cut(s)	390, 605, 818, 844
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	672, 803
Fnu4HI	GCNGC	2 cut(s)	387, 858
FokI	GGATG	4 cut(s)	88, 444, 866, 878
Fsp4HI	GCNGC	2 cut(s)	387, 858
FspBI	CTAG	3 cut(s)	200, 363, 563
GluI	GCNGC	2 cut(s)	387, 858
GsuI	CTGGAG	3 cut(s)	393, 666, 859
HaeIII	GGCC	2 cut(s)	140, 1015
HapII	CCGG	2 cut(s)	136, 189
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	4 cut(s)	394, 609, 822, 848
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HinfI	GANTC	5 cut(s)	398, 493, 549, 566, 737
HpaII	CCGG	2 cut(s)	136, 189
HphI	GGTGA	3 cut(s)	55, 125, 724
Hpy166II	GTNNAC	4 cut(s)	558, 673, 804, 901
Hpy188I	TCNGA	5 cut(s)	173, 541, 778, 885, 970
Hpy188III	TCNNGA	6 cut(s)	279, 402, 490, 563, 665, 689
Hpy8I	GTNNAC	4 cut(s)	558, 673, 804, 901
HpyAV	CCTTC	4 cut(s)	53, 293, 536, 783
HpyCH4III	ACNGT	2 cut(s)	125, 1059
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	9 cut(s)	113, 268, 296, 721, 786, 818, 857, 927, 1062
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 386, 718
HpyF3I	CTNAG	2 cut(s)	308, 538
HpySE526I	ACGT	1 cut(s)	669
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	394, 609, 822, 848
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	275, 454, 486, 649
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	2 cut(s)	398, 869
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	3 cut(s)	200, 363, 563
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	77, 125, 887
MalI	GATC	4 cut(s)	277, 456, 488, 651
MboI	GATC	4 cut(s)	275, 454, 486, 649
MboII	GAAGA	3 cut(s)	558, 622, 732
MflI	RGATCY	2 cut(s)	486, 649
MlyI	GAGTC	2 cut(s)	392, 731
MmeI	TCCRAC	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	2 cut(s)	828, 1047
MspI	CCGG	2 cut(s)	136, 189
MspR9I	CCNGG	2 cut(s)	137, 1040
MvaI	CCWGG	1 cut(s)	1040
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	189, 386, 718
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	4 cut(s)	275, 454, 486, 649
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	4 cut(s)	394, 609, 822, 848
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	822
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	493, 549, 566
PfoI	TCCNGGA	1 cut(s)	1038
PkrI	GCNGC	2 cut(s)	388, 859
PleI	GAGTC	2 cut(s)	392, 731
PpsI	GAGTC	2 cut(s)	392, 731
PshAI	GACNNNNGTC	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	1038
PspGI	CCWGG	1 cut(s)	1038
PspPI	GGNCC	2 cut(s)	138, 753
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	486, 649
RsaI	GTAC	1 cut(s)	990
RsaNI	GTAC	1 cut(s)	989
SaqAI	TTAA	2 cut(s)	828, 1047
SatI	GCNGC	2 cut(s)	387, 858
Sau3AI	GATC	4 cut(s)	275, 454, 486, 649
Sau96I	GGNCC	2 cut(s)	138, 753
SchI	GAGTC	2 cut(s)	392, 731
ScrFI	CCNGG	2 cut(s)	137, 1040
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	3 cut(s)	47, 234, 294
SinI	GGWCC	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	3 cut(s)	200, 363, 563
StyD4I	CCNGG	2 cut(s)	135, 1038
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	125, 1059
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	278, 743
TatI	WGTACW	1 cut(s)	988
TfiI	GAWTC	3 cut(s)	493, 549, 566
Tru1I	TTAA	2 cut(s)	828, 1047
Tru9I	TTAA	2 cut(s)	828, 1047
TscAI	CASTG	4 cut(s)	130, 270, 322, 1064
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	386, 857
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	611, 972
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	4 cut(s)	130, 270, 322, 1064
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	3 cut(s)	287, 406, 427
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	1 cut(s)	822
XmiI	GTMKAC	2 cut(s)	672, 803
XspI	CTAG	3 cut(s)	200, 363, 563
ZraI	GACGTC	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.