Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

48373909 .. 48385487

Gene Structure 11579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCTGGACAAGGGAAATTTCGTTCTGGCAGCCCGAAATTCAACCTATTTGTGGCAGAGTTTTGATCATCCAACTGATACCATCCTTCCCACACAGACCCTGAATCTAAACAGCTGTCTCTTTGCCCAACTTACAGAAACAAATTATTCAGAAGGAAGATTCGAGTTTATTCTAGAGTCCGGTGGAAATCTTACGCTTTATACAATGAATCATCCATTGAAGAGTAATTATTTTCCTTACTGGTCAATTAAAACTGGTAGTGGCTTTCAGGTCATCTTCAACCAATCTGGCTCTATATACCTCACAGCACAGAACGGAAGCATACTTGATTTGGTCTTAGCAGATCCAGATTCCACTCAAGACTTCTACCAGAGAGCAACTCTTGACTATGATGGAGTTTTGAGGTACTATATGCACCAGAAAAGCACCGACTCTTCGAGTGCTTGGTTCCCTTATAGCTTCATACCTTCAAATATTTGCACAGCAATTATGGAATATACAGGTGGTGGTGCATGTGGGTTTAACAGCTTATGTAGACATGATAAGGATGCAGCTCATACTAATTGCTCCTGCCCTCCTAGTTACATCCACATTGACCAAGATGATGAGAGGAAAGGGTGCAAGCCAAACTTTGTTCCCCAAAGTTGTGATAAAGCCTCATCAGAAACAGACCTCTTTGAATTACAAGAGCTTCCACTCACCGATTGGCCTGGTGGTGCAGATTATGAGCATTTCCAGCCAATAAGGAACATAAATAGTGATTGTTGGAAGAAGGGAATCCCTCTTTTTAACGGGAGGATCAATAAAGATGTTGAAGGAGTAGCTCTGGTGAAAATAAGGAAAGGCACTTTGACACCAGCAAAAGAGAAGGACAGTCTAACTCTGCTCATCATCGCAGCAGTGATCATTTTAATATCAACCAACTTGGTTGTTTTTATAATAACCCATCTGGTTACCTCTCATGCAAAGGTGAATCGACTTAATCCTGTGGTTCAAGGCATGAATCTGAAATGTTTCACTTTCATGGAGCTAAAAGAAGCCACCAATGGATTCAAGGAAGAGCTAGGTCGTGGTGCTTTTGCAACTAACCAGGGAAAGACGTCTAACGAAGATTGCAAAACCGGTTCTCTTATATCTGTTAAGTTCGAGGGAAAAGAGACTTACACTCAAGAAGAGATTGATGTAGTTCGAATAGAATGGGCGGAGCAGGTTGATGGATATATTGAAGATGAAGTAAATAGTCAGCATGTATTACTTGTTTTGGATGGTATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

425

Amino Acids

47.61

Weight (kDa)

5.02

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 38	4.9e-10	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
AatII	GACGTC	1 cut(s)	1103
Acc36I	ACCTGC	1 cut(s)	1198
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	1 cut(s)	1202
AclWI	GGATC	2 cut(s)	338, 806
AcsI	RAATTY	2 cut(s)	16, 37
AcyI	GRCGYC	1 cut(s)	1100
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgeI	ACCGGT	1 cut(s)	1121
AgsI	TTSAA	9 cut(s)	42, 220, 280, 471, 680, 815, 995, 1054, 1226
AjnI	CCWGG	2 cut(s)	709, 1089
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	8 cut(s)	114, 459, 528, 554, 691, 824, 1030, 1063
AluI	AGCT	8 cut(s)	114, 459, 528, 554, 691, 824, 1030, 1063
Alw26I	GTCTC	2 cut(s)	122, 1151
AlwI	GGATC	2 cut(s)	338, 806
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	3 cut(s)	29, 551, 896
ApoI	RAATTY	2 cut(s)	16, 37
AsiGI	ACCGGT	1 cut(s)	1121
Asp700I	GAANNNNTTC	1 cut(s)	1013
AsuHPI	GGTGA	3 cut(s)	691, 841, 982
AsuII	TTCGAA	1 cut(s)	1189
BbvI	GCAGC	3 cut(s)	41, 563, 908
BccI	CCATC	5 cut(s)	89, 386, 954, 1208, 1259
BciT130I	CCWGG	2 cut(s)	711, 1091
BclI	TGATCA	2 cut(s)	64, 903
BcoDI	GTCTC	2 cut(s)	122, 1151
BfaI	CTAG	3 cut(s)	173, 579, 1064
BfuAI	ACCTGC	1 cut(s)	1198
BisI	GCNGC	3 cut(s)	30, 552, 897
BlsI	GCNGC	3 cut(s)	31, 553, 898
Bme1390I	CCNGG	2 cut(s)	711, 1091
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	711, 1091
BmsI	GCATC	1 cut(s)	538
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu14I	TTCGAA	1 cut(s)	1189
BpuEI	CTTGAG	2 cut(s)	342, 1152
BsaHI	GRCGYC	1 cut(s)	1100
BsaJI	CCNNGG	1 cut(s)	1090
BsaWI	WCCGGW	2 cut(s)	179, 1121
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	1121
Bse1I	ACTGG	2 cut(s)	245, 259
BseBI	CCWGG	2 cut(s)	711, 1091
BseDI	CCNNGG	1 cut(s)	1090
BseGI	GGATG	6 cut(s)	67, 81, 211, 553, 585, 1270
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	245, 259
BseXI	GCAGC	3 cut(s)	41, 563, 908
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	709
BshTI	ACCGGT	1 cut(s)	1121
BsiSI	CCGG	2 cut(s)	180, 1122
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	122, 1151
BsnI	GGCC	1 cut(s)	709
Bsp119I	TTCGAA	1 cut(s)	1189
Bsp143I	GATC	4 cut(s)	64, 343, 798, 903
BspACI	CCGC	1 cut(s)	1202
BspANI	GGCC	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	1198
BspPI	GGATC	2 cut(s)	338, 806
BspQI	GCTCTTC	1 cut(s)	1053
BspT104I	TTCGAA	1 cut(s)	1189
BsrFI	RCCGGY	1 cut(s)	1121
BsrI	ACTGG	2 cut(s)	245, 259
BssAI	RCCGGY	1 cut(s)	1121
BssECI	CCNNGG	1 cut(s)	1090
BssMI	GATC	4 cut(s)	64, 343, 798, 903
BssNI	GRCGYC	1 cut(s)	1100
Bst2UI	CCWGG	2 cut(s)	711, 1091
Bst4CI	ACNGT	1 cut(s)	875
Bst6I	CTCTTC	4 cut(s)	215, 439, 1053, 1167
BstACI	GRCGYC	1 cut(s)	1100
BstBI	TTCGAA	1 cut(s)	1189
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	337
BstEII	GGTNACC	1 cut(s)	952
BstF5I	GGATG	6 cut(s)	67, 81, 211, 553, 585, 1270
BstKTI	GATC	4 cut(s)	67, 346, 801, 906
BstMAI	GTCTC	2 cut(s)	122, 1151
BstMBI	GATC	4 cut(s)	64, 343, 798, 903
BstMWI	GCNNNNNNNGC	1 cut(s)	736
BstNI	CCWGG	2 cut(s)	711, 1091
BstNSI	RCATGY	2 cut(s)	516, 1250
BstPI	GGTNACC	1 cut(s)	952
BstSCI	CCNGG	2 cut(s)	709, 1089
BstV1I	GCAGC	3 cut(s)	41, 563, 908
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	877
BtsCI	GGATG	6 cut(s)	67, 81, 211, 553, 585, 1270
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	1 cut(s)	906
BveI	ACCTGC	1 cut(s)	1198
Cac8I	GCNNGC	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	1121
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	1 cut(s)	1121
CviAII	CATG	6 cut(s)	513, 539, 962, 1000, 1024, 1247
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	4 cut(s)	66, 345, 800, 905
DpnII	GATC	4 cut(s)	64, 343, 798, 903
Eam1104I	CTCTTC	4 cut(s)	215, 439, 1053, 1167
EarI	CTCTTC	4 cut(s)	215, 439, 1053, 1167
EciI	GGCGGA	1 cut(s)	1217
Eco91I	GGTNACC	1 cut(s)	952
EcoO65I	GGTNACC	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	709, 1089
FaeI	CATG	6 cut(s)	516, 542, 965, 1003, 1027, 1250
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	6 cut(s)	512, 538, 961, 999, 1023, 1246
FbaI	TGATCA	2 cut(s)	64, 903
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	30, 552, 897
FokI	GGATG	5 cut(s)	54, 68, 198, 560, 572
Fsp4HI	GCNGC	3 cut(s)	30, 552, 897
FspBI	CTAG	3 cut(s)	173, 579, 1064
GluI	GCNGC	3 cut(s)	30, 552, 897
HaeIII	GGCC	1 cut(s)	709
HapII	CCGG	2 cut(s)	180, 1122
Hin1I	GRCGYC	1 cut(s)	1100
Hin1II	CATG	6 cut(s)	516, 542, 965, 1003, 1027, 1250
HpaII	CCGG	2 cut(s)	180, 1122
HphI	GGTGA	3 cut(s)	691, 841, 982
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	3 cut(s)	151, 664, 1008
Hpy188III	TCNNGA	5 cut(s)	173, 347, 359, 383, 1169
Hpy8I	GTNNAC	1 cut(s)	536
HpyAV	CCTTC	6 cut(s)	95, 146, 477, 766, 809, 862
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	1 cut(s)	1100
HpyCH4V	TGCA	9 cut(s)	415, 480, 512, 551, 621, 719, 965, 1082, 1116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	736
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	1100
Hsp92I	GRCGYC	1 cut(s)	1100
Hsp92II	CATG	6 cut(s)	516, 542, 965, 1003, 1027, 1250
Ksp22I	TGATCA	2 cut(s)	64, 903
Kzo9I	GATC	4 cut(s)	64, 343, 798, 903
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	3 cut(s)	572, 1027, 1204
Lsp1109I	GCAGC	3 cut(s)	41, 563, 908
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	3 cut(s)	173, 579, 1064
MaeII	ACGT	1 cut(s)	1100
MaeIII	GTNAC	2 cut(s)	581, 952
MalI	GATC	4 cut(s)	66, 345, 800, 905
MboI	GATC	4 cut(s)	64, 343, 798, 903
MboII	GAAGA	9 cut(s)	168, 232, 268, 426, 781, 1070, 1121, 1184, 1238
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	9 cut(s)	16, 37, 142, 226, 246, 486, 562, 680, 1273
MlyI	GAGTC	2 cut(s)	185, 425
MmeI	TCCRAC	2 cut(s)	95, 746
MroXI	GAANNNNTTC	1 cut(s)	1013
MseI	TTAA	6 cut(s)	249, 522, 789, 911, 981, 1140
MslI	CAYNNNNRTG	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	180, 1122
MspR9I	CCNGG	2 cut(s)	711, 1091
MvaI	CCWGG	2 cut(s)	711, 1091
MwoI	GCNNNNNNNGC	1 cut(s)	736
NdeII	GATC	4 cut(s)	64, 343, 798, 903
NlaIII	CATG	6 cut(s)	516, 542, 965, 1003, 1027, 1250
NlaIV	GGNNCC	1 cut(s)	449
NspI	RCATGY	2 cut(s)	516, 1250
NspV	TTCGAA	1 cut(s)	1189
PciSI	GCTCTTC	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	1013
PfeI	GAWTC	8 cut(s)	103, 159, 208, 350, 777, 973, 1003, 1050
PinAI	ACCGGT	1 cut(s)	1121
PkrI	GCNGC	3 cut(s)	31, 553, 898
PleI	GAGTC	2 cut(s)	184, 425
PpsI	GAGTC	2 cut(s)	184, 425
PsiI	TTATAA	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	709, 1089
PspEI	GGTNACC	1 cut(s)	952
PspGI	CCWGG	2 cut(s)	709, 1089
PspN4I	GGNNCC	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	1022
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	6 cut(s)	249, 522, 789, 911, 981, 1140
SatI	GCNGC	3 cut(s)	30, 552, 897
Sau3AI	GATC	4 cut(s)	64, 343, 798, 903
SchI	GAGTC	2 cut(s)	185, 425
ScrFI	CCNGG	2 cut(s)	711, 1091
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	1189
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	2 cut(s)	357, 1167
SmoI	CTYRAG	2 cut(s)	357, 1167
Sse9I	AATT	9 cut(s)	16, 37, 142, 226, 246, 486, 562, 680, 1273
SsiI	CCGC	1 cut(s)	1202
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	3 cut(s)	173, 579, 1064
StyD4I	CCNGG	2 cut(s)	709, 1089
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	1 cut(s)	1103
TaqI	TCGA	5 cut(s)	162, 437, 976, 1146, 1189
TasI	AATT	9 cut(s)	16, 37, 142, 226, 246, 486, 562, 680, 1273
TfiI	GAWTC	8 cut(s)	103, 159, 208, 350, 777, 973, 1003, 1050
Tru1I	TTAA	6 cut(s)	249, 522, 789, 911, 981, 1140
Tru9I	TTAA	6 cut(s)	249, 522, 789, 911, 981, 1140
TscAI	CASTG	1 cut(s)	906
TseI	GCWGC	3 cut(s)	29, 551, 896
TspDTI	ATGAA	5 cut(s)	221, 451, 1012, 1016, 1245
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	906
XapI	RAATTY	2 cut(s)	16, 37
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	516, 1250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	1013
XspI	CTAG	3 cut(s)	173, 579, 1064
ZraI	GACGTC	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.