Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Reverse (-)

36487715 .. 36488194

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43772.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGCATGCCTTCGTTCAGTCTTACCAGAAACAGTTCAGACACAAGACGTCTACCAGAGAGCAACTCTTGACTATGATGGAGTTTTGAGGCACTATACCCACCAGAAAGAAACCGACTCTTCAAGTGCTTGGTACACTTTTAGCTTCATGCCTCCAAATATCTGCACAGCAATTAAGGAATCAATAGGTGGTGGTGCATGTGGGTTTAACCGCTTGTGTAAACATGAAGATGCAGCTCATACTAATTGCTCATGCCCCCCGAGTTACATCCCTGTTGACCATGATGATGAGAGGAAAGGGTGTAAGCAAAACTTTGTTCCCCACAGTTGTGATAAAGCTTCATCAGAAGCAGACCTCTTTGAGTTTCAAGAGCTTCCAGACCTCTTTGAGTTTCAAGAGCTTCCAAACACCGATTGGCCTGGTGGAAATTATGAGCGTTTGCGACCAGTAAATAAGGAGCAGTGCAAGCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

160

Amino Acids

18.09

Weight (kDa)

4.95

Isoelectric Point (pI)

68.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	126, 371, 398
AjnI	CCWGG	1 cut(s)	421
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	5 cut(s)	147, 239, 341, 376, 403
AluI	AGCT	5 cut(s)	147, 239, 341, 376, 403
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BsaHI	GRCGYC	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	262
BsnI	GGCC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	449
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	37, 329
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	10, 470
BstF5I	GGATG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	12, 204
BstSCI	CCNGG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	10, 470
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	6 cut(s)	9, 151, 201, 227, 255, 284
CviJI	RGCY	6 cut(s)	147, 239, 341, 376, 403, 421
CviKI_1	RGCY	6 cut(s)	147, 239, 341, 376, 403, 421
CviQI	GTAC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	421
FaeI	CATG	6 cut(s)	12, 154, 204, 230, 258, 287
FalI	AAGNNNNNCTT	3 cut(s)	29, 299, 331
FatI	CATG	6 cut(s)	8, 150, 200, 226, 254, 283
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	12, 154, 204, 230, 258, 287
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	119, 182
Hpy166II	GTNNAC	4 cut(s)	55, 138, 224, 280
Hpy188I	TCNGA	2 cut(s)	42, 349
Hpy188III	TCNNGA	4 cut(s)	71, 371, 380, 398
Hpy8I	GTNNAC	4 cut(s)	55, 138, 224, 280
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	37, 329
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	168, 200, 236, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	12, 154, 204, 230, 258, 287
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	8 cut(s)	42, 71, 119, 288, 393, 408, 435, 462
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	114, 242
MluCI	AATT	3 cut(s)	174, 247, 430
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	84, 165, 288, 368, 395
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	177, 210
MslI	CAYNNNNRTG	3 cut(s)	231, 288, 330
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	469
NlaIII	CATG	6 cut(s)	12, 154, 204, 230, 258, 287
NspI	RCATGY	2 cut(s)	12, 204
OliI	CACNNNNGTG	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	3 cut(s)	231, 288, 330
SaqAI	TTAA	2 cut(s)	177, 210
SatI	GCNGC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	423
SetI	ASST	9 cut(s)	54, 149, 193, 241, 343, 360, 378, 387, 405
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	3 cut(s)	231, 288, 330
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	3 cut(s)	174, 247, 430
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	37, 329
TaiI	ACGT	1 cut(s)	54
TasI	AATT	3 cut(s)	174, 247, 430
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	177, 210
Tru9I	TTAA	2 cut(s)	177, 210
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	139, 243, 333
TspRI	CASTG	1 cut(s)	470
XceI	RCATGY	2 cut(s)	12, 204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.