Rroxscaffold_1G00004400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
6083024 .. 6085429
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004400.1

Sequence Viewer

Length: 1236 bp
ATGGCTTTTAAACTAATATATGCCTTATGCTTTCTACTTCTGCTTCTACTACTACCATTTCCCACCCCTGCTCAAACTTACCATAATATATCTCTTAAATCGTCCCTTGTTGCAGGGGAGGATAGCAGTCCTTGGGCCTCACCATCCGGCGAATTTGCTTTTGGTTTCCAAAAAATTGGCAACAAGGGCTTCATACTAGCCATCTGGTTTGACAAAATACCTGAAAAAACTATTGTGTGGTCAGCCAACGGAAACAACTTGGCGGAAGAAGGATCAACAGTTGAACTCAACACATTTGGACAGTTAGTGCTCAATGATGCATCAGGAGAACAAAGGTTGCTATCTGACCATCACTCAACTCGAGGTACTAGAGTTGCCTATGCAGCCATGCTTGACTCAGGAAATTTTGTGCTGGCTGACCAAGAGTCAAACAATTTGTGGGAGAGTTTTGATCAACCAACTGATACAATCTTACCTACACAGACTCTAAGTATAGCTATTCCAGATGCAAAGATGAAACATACTTCAAATTTGGTTCACATTGGATCAGTGCTCGTGCTACTAATAACCTATTTGGTTGTTGCTATGATCACCTACTTGGTTGTTTCTCGTATCTACTCTAGGAAAGCAAAAGTTAGTGACCTTTACCCAGTCAATCTAAAATGTTTCACTTACGTGGAGCTCAAGCAAGCTACAAATGGATTCAAGGAAGAACTAGGTCGTGGTGCTTTTGCGACAGTTTTCAAAGGAGTTTTAGCTTGTGATAAAGGGAAGGTAGTTGCTGTAAAAAGATTGGACACAGTGGTTAGAGAAAATGACTGGGAATTCAAAGCTGAAGTAGGAGCAATGGGTGGGACAAATCACAGAAATTTAGTCAAACTACAAGGATTCTGCAACGAGGGGCAGCACCGAATTCTTGTGTATGAGTTCATGAGTAATGGCTCTCTAGCAAGCTTCCTCTTTGGAGAGGCAGAGGCAGAGGATGATGATCAAATGATACTAGCTGATTGGGCATATAATTGCTATAAGCAACAAAAATTGCATCTGTTACTGCAGAATGATGATGATGAAGCAAAGGATGACATCAAAGCGGTGGAGAAGTCTGTGATGATTGCATTTTGGTGCATTCAGGAGGATCCATCAATGAGACCAACCATGAAGACTGTCACACAGATGCTTGAAGGAATAGTTGAAGTGTCAGTCCCACAAAACCCATCCTCATTGTATGCAATTTAA

Protein Analysis

411

Amino Acids

45.72

Weight (kDa)

5.21

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 166 1.1e-16 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 235 - 323 4e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 236 - 321 1.3e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 263, 1091
AclWI GGATC 4 cut(s) 280, 553, 1130, 1143
AcsI RAATTY 6 cut(s) 152, 403, 529, 824, 868, 912
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 7 cut(s) 284, 528, 706, 745, 829, 1181, 1193
AhdI GACNNNNNGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 674
AluBI AGCT 7 cut(s) 497, 682, 692, 758, 833, 954, 1004
AluI AGCT 7 cut(s) 497, 682, 692, 758, 833, 954, 1004
Alw21I GWGCWC 3 cut(s) 312, 555, 684
Alw26I GTCTC 1 cut(s) 1141
AlwI GGATC 4 cut(s) 280, 553, 1130, 1143
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 383, 904
ApoI RAATTY 6 cut(s) 152, 403, 529, 824, 868, 912
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 132, 583
AvaI CYCGRG 1 cut(s) 360
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BamHI GGATCC 1 cut(s) 1135
BanII GRGCYC 1 cut(s) 684
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 3 cut(s) 312, 555, 684
BbvI GCAGC 2 cut(s) 395, 916
BccI CCATC 5 cut(s) 151, 209, 357, 1147, 1222
BclI TGATCA 3 cut(s) 451, 588, 988
BcoDI GTCTC 1 cut(s) 1141
BfaI CTAG 6 cut(s) 197, 369, 621, 716, 947, 1001
BfmI CTRYAG 1 cut(s) 1052
BisI GCNGC 2 cut(s) 384, 905
BlsI GCNGC 2 cut(s) 385, 906
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 1137
BmrI ACTGGG 2 cut(s) 644, 829
BmsI GCATC 5 cut(s) 307, 329, 496, 1051, 1164
BmuI ACTGGG 2 cut(s) 644, 829
BpiI GAAGAC 1 cut(s) 1166
BpuEI CTTGAG 1 cut(s) 668
BsaAI YACGTR 1 cut(s) 676
BsaBI GATNNNNATC 1 cut(s) 987
BsaI GGTCTC 1 cut(s) 1141
BsaJI CCNNGG 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 650, 824
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 987
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 4 cut(s) 143, 988, 1084, 1214
BseJI GATNNNNATC 1 cut(s) 987
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 650, 824
BseXI GCAGC 2 cut(s) 395, 916
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 3 cut(s) 312, 555, 684
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 3 cut(s) 88, 868, 1187
BsmAI GTCTC 1 cut(s) 1141
BsmFI GGGAC 3 cut(s) 88, 868, 1187
BsmI GAATGC 1 cut(s) 1125
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 1141
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 312, 555, 684
Bsp143I GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
BspACI CCGC 2 cut(s) 263, 1091
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 1137
BspMAI CTGCAG 1 cut(s) 1056
BspPI GGATC 4 cut(s) 280, 553, 1130, 1143
BspTNI GGTCTC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 2 cut(s) 650, 824
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 554
Bst4CI ACNGT 5 cut(s) 280, 303, 739, 802, 1165
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 3 cut(s) 414, 690, 952
BstDEI CTNAG 2 cut(s) 397, 488
BstF5I GGATG 4 cut(s) 143, 988, 1084, 1214
BstKTI GATC 6 cut(s) 275, 454, 548, 591, 991, 1138
BstMAI GTCTC 1 cut(s) 1141
BstMBI GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
BstMWI GCNNNNNNNGC 3 cut(s) 186, 383, 1010
BstSFI CTRYAG 1 cut(s) 1052
BstV1I GCAGC 2 cut(s) 395, 916
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 1 cut(s) 1135
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 1135
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 4 cut(s) 143, 988, 1084, 1214
BtsIMutI CAGTG 2 cut(s) 555, 807
Cac8I GCNNGC 3 cut(s) 414, 690, 952
CciI TCATGA 1 cut(s) 930
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 366
CviAII CATG 3 cut(s) 388, 931, 1156
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 397, 488
DpnI GATC 6 cut(s) 274, 453, 547, 590, 990, 1137
DpnII GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
DraI TTTAAA 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 424
Eam1105I GACNNNNNGTC 1 cut(s) 424
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 1141
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 2 cut(s) 824, 912
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 391, 934, 1159
FaqI GGGAC 3 cut(s) 88, 868, 1187
FatI CATG 3 cut(s) 387, 930, 1155
FbaI TGATCA 3 cut(s) 451, 588, 988
Fnu4HI GCNGC 2 cut(s) 384, 905
FokI GGATG 4 cut(s) 130, 995, 1091, 1201
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 2 cut(s) 384, 905
FspBI CTAG 6 cut(s) 197, 369, 621, 716, 947, 1001
GluI GCNGC 2 cut(s) 384, 905
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 147
Hin1II CATG 3 cut(s) 391, 934, 1159
HindIII AAGCTT 1 cut(s) 952
HinfI GANTC 5 cut(s) 395, 425, 484, 702, 888
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 132, 583
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 5 cut(s) 324, 399, 503, 931, 1130
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 3 cut(s) 263, 766, 1175
HpyCH4III ACNGT 5 cut(s) 280, 303, 739, 802, 1165
HpyCH4IV ACGT 1 cut(s) 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 383, 1010
HpyF3I CTNAG 2 cut(s) 397, 488
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 3 cut(s) 391, 934, 1159
Ksp22I TGATCA 3 cut(s) 451, 588, 988
Kzo9I GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
LmnI GCTCC 2 cut(s) 679, 842
Lsp1109I GCAGC 2 cut(s) 395, 916
LweI GCATC 5 cut(s) 307, 329, 496, 1051, 1164
MaeI CTAG 6 cut(s) 197, 369, 621, 716, 947, 1001
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 638, 1047, 1165
MalI GATC 6 cut(s) 274, 453, 547, 590, 990, 1137
MboI GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
MboII GAAGA 3 cut(s) 278, 722, 1171
MflI RGATCY 1 cut(s) 1135
MhlI GDGCHC 3 cut(s) 312, 555, 684
MlyI GAGTC 3 cut(s) 389, 434, 478
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 3 cut(s) 9, 96, 1234
MslI CAYNNNNRTG 3 cut(s) 674, 1120, 1172
MspI CCGG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 1125
MwoI GCNNNNNNNGC 3 cut(s) 186, 383, 1010
NdeII GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
NlaIII CATG 3 cut(s) 391, 934, 1159
NlaIV GGNNCC 1 cut(s) 1137
NmuCI GTSAC 2 cut(s) 638, 1165
NsiI ATGCAT 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 360
PagI TCATGA 1 cut(s) 930
PctI GAATGC 1 cut(s) 1125
PfeI GAWTC 2 cut(s) 702, 888
PkrI GCNGC 2 cut(s) 385, 906
PleI GAGTC 3 cut(s) 389, 433, 478
PpsI GAGTC 3 cut(s) 389, 433, 478
Ppu21I YACGTR 1 cut(s) 676
Psp124BI GAGCTC 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 1137
PspPI GGNCC 1 cut(s) 135
PspXI VCTCGAGB 1 cut(s) 360
PstI CTGCAG 1 cut(s) 1056
PsuI RGATCY 1 cut(s) 1135
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 3 cut(s) 674, 1120, 1172
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 3 cut(s) 9, 96, 1234
SatI GCNGC 2 cut(s) 384, 905
Sau3AI GATC 6 cut(s) 272, 451, 545, 588, 988, 1135
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 3 cut(s) 389, 434, 478
SduI GDGCHC 3 cut(s) 312, 555, 684
SfaNI GCATC 5 cut(s) 307, 329, 496, 1051, 1164
SfcI CTRYAG 1 cut(s) 1052
Sfr274I CTCGAG 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 360
SmiMI CAYNNNNRTG 3 cut(s) 674, 1120, 1172
SmlI CTYRAG 2 cut(s) 360, 683
SmoI CTYRAG 2 cut(s) 360, 683
SsiI CCGC 2 cut(s) 263, 1091
SspMI CTAG 6 cut(s) 197, 369, 621, 716, 947, 1001
SstI GAGCTC 1 cut(s) 684
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 5 cut(s) 280, 303, 739, 802, 1165
TaiI ACGT 1 cut(s) 678
TaqI TCGA 1 cut(s) 361
TfiI GAWTC 2 cut(s) 702, 888
Tru1I TTAA 3 cut(s) 9, 96, 1234
Tru9I TTAA 3 cut(s) 9, 96, 1234
TscAI CASTG 2 cut(s) 555, 807
TseFI GTSAC 2 cut(s) 638, 1165
TseI GCWGC 2 cut(s) 383, 904
Tsp45I GTSAC 2 cut(s) 638, 1165
TspDTI ATGAA 5 cut(s) 181, 530, 919, 1083, 1172
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 555, 807
XapI RAATTY 6 cut(s) 152, 403, 529, 824, 868, 912
XhoI CTCGAG 1 cut(s) 360
XspI CTAG 6 cut(s) 197, 369, 621, 716, 947, 1001
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.