Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000299

Physical Location & Seq

Genomic Coordinates Forward (+)

63608978 .. 63610138

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0461800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCAAGATCGTATAAATTGGAAGAACTGTACATGCAAGGTAATTTTGGGGACTGGGGAAGAGGACGATACAAAACTAATGCTGGTTTTGATGAGTTGATTGGCTTGCAATATTTAAACATTGTGAAGCTTCGCATATCTGATGCACAATGCTTGCCTAAAAATGTTGTATTCAATTTCAATTGGTCAATTTTCGATATATGTATCAGCAGAGAATCACCATCTAGAGACTACTCTTCAAAACCTTACTGTTCACATGATCTTTCAAGGACCTTGACTCTTAGCACAACAATCAACACCTTACCAGATTGGTTTATCAAAGTGGTAGCAGAGAAAGCAGAGAAACTACAGTACCTAAAGTGCAAAGGCCTAAAGAACATTCTTGTGGAACATGAGTACTTGGCAGTGTTGATGGAAACAATAACACGGGTGATAAATGTATCTGTGTTCAAGAACTTGGAAGAGTTGCATCTCCTTGGTGTGAGTTGTCTGAAGGAGTTATGTGTTGGTGAATTACCACTTCGGTCTCTATTCAATCTCAAGTCATTAAAGGTGGAATATTGCCATGACTTGGTGAATGCACTTTTGTCATCAAATTTGTTGCAAAGACTACAAAATCTGGAAAAACTTCATTGTGAAGATATGAATGTTATGGAGTATGTGTTTGGATCTGAAGGGCTGGAGCCAGAAGACATTATCTTGCCAAAATTGAGGGAGATGATATTGTGGGATCTAGAAAAACTAATAAGCATATGGAGTGGTCCTGCTCCAAATGCAGTCTTCCATAATCTTAAAAGTTTGGCAGTCTCAGGTTGCAAAAAACTTGAAAGTCTCTTTACATATGAGGTAGCTAAATGTCTTTTGCAATTGGAAGACCTTTCGGTAACTCAATGTCCTAGCTTGGACATGGTTATTAAACCAAGCAAGGAAGTAGTGGACAAGAAGATCATTTTTCCAGAATTGAAGAACTTAGCTTTGTCGTATCTTCCACGGATCACTAGGTTCTGCGGTAGTGGAATTGCTACTATGGAGTGCCCTTCATTGGAACATTTGCATGTGCAGGACTGCCCCCATTTTACAACCTCTACTTCTGACTTCCACTGCTTGAAGCAATTTCAAGTCAATGATCTACGACATTTGAGGTATAATAAACTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

386

Amino Acids

44.35

Weight (kDa)

6.64

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	153 - 298	2.7e-31	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica	MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica	Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis	pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis	RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata	RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora	Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii	Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa	Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha	Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana	Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	1 cut(s)	1008
AclWI	GGATC	3 cut(s)	676, 738, 1001
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	512, 693
AfaI	GTAC	3 cut(s)	32, 353, 398
AfiI	CCNNNNNNNGG	2 cut(s)	571, 1042
AluBI	AGCT	4 cut(s)	130, 851, 900, 974
AluI	AGCT	4 cut(s)	130, 851, 900, 974
Alw26I	GTCTC	4 cut(s)	222, 531, 811, 836
AlwI	GGATC	3 cut(s)	676, 738, 1001
AoxI	GGCC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	595
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	270, 761
AsuHPI	GGTGA	4 cut(s)	210, 442, 521, 586
AvaII	GGWCC	2 cut(s)	270, 761
BaeGI	GKGCMC	1 cut(s)	1037
BaeI	ACNNNNGTAYC	2 cut(s)	335, 368
BbsI	GAAGAC	3 cut(s)	696, 772, 879
BccI	CCATC	2 cut(s)	229, 406
BcoDI	GTCTC	4 cut(s)	222, 531, 811, 836
BfaI	CTAG	4 cut(s)	225, 734, 897, 999
BfmI	CTRYAG	1 cut(s)	347
BmcAI	AGTACT	1 cut(s)	398
Bme18I	GGWCC	2 cut(s)	270, 761
BmgT120I	GGNCC	2 cut(s)	270, 761
BmiI	GGNNCC	1 cut(s)	684
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	133, 478
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	3 cut(s)	696, 772, 879
BpmI	CTGGAG	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	475, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 1042
Bse1I	ACTGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	475, 989
BseLI	CCNNNNNNNGG	2 cut(s)	571, 1042
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	1037
BsgI	GTGCAG	1 cut(s)	1079
BshFI	GGCC	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	571, 1042
BsmAI	GTCTC	4 cut(s)	222, 531, 811, 836
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
BspACI	CCGC	1 cut(s)	1008
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	821
BspLI	GGNNCC	1 cut(s)	684
BspPI	GGATC	3 cut(s)	676, 738, 1001
BspTNI	GGTCTC	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	475, 989
BssMI	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
BssT1I	CCWWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	30, 251, 351
Bst6I	CTCTTC	3 cut(s)	55, 241, 456
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	107, 155
BstDEI	CTNAG	3 cut(s)	281, 808, 970
BstDSI	CCRYGG	1 cut(s)	989
BstKTI	GATC	7 cut(s)	11, 262, 671, 733, 948, 996, 1129
BstMAI	GTCTC	4 cut(s)	222, 531, 811, 836
BstMBI	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 773
BstNSI	RCATGY	2 cut(s)	37, 1058
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	1037
BstV2I	GAAGAC	3 cut(s)	696, 772, 879
BstX2I	RGATCY	2 cut(s)	668, 730
BstYI	RGATCY	2 cut(s)	668, 730
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	989
BtsI	GCAGTG	2 cut(s)	411, 1099
BtsIMutI	CAGTG	2 cut(s)	411, 1099
Cac8I	GCNNGC	2 cut(s)	107, 155
Cfr13I	GGNCC	2 cut(s)	270, 761
Csp6I	GTAC	3 cut(s)	31, 352, 397
CviAII	CATG	6 cut(s)	34, 257, 392, 566, 907, 1055
CviJI	RGCY	8 cut(s)	105, 130, 369, 679, 685, 851, 900, 974
CviKI_1	RGCY	8 cut(s)	105, 130, 369, 679, 685, 851, 900, 974
CviQI	GTAC	3 cut(s)	31, 352, 397
DdeI	CTNAG	3 cut(s)	281, 808, 970
DpnI	GATC	7 cut(s)	10, 261, 670, 732, 947, 995, 1128
DpnII	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	3 cut(s)	55, 241, 456
EarI	CTCTTC	3 cut(s)	55, 241, 456
Eco130I	CCWWGG	1 cut(s)	475
Eco147I	AGGCCT	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	270, 761
Eco57I	CTGAAG	2 cut(s)	512, 693
EcoO109I	RGGNCCY	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	6 cut(s)	37, 260, 395, 569, 910, 1058
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	33, 256, 391, 565, 906, 1054
FauNDI	CATATG	2 cut(s)	752, 841
FspBI	CTAG	4 cut(s)	225, 734, 897, 999
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	37, 260, 395, 569, 910, 1058
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	215, 277
HphI	GGTGA	4 cut(s)	210, 442, 521, 586
Hpy166II	GTNNAC	2 cut(s)	254, 937
Hpy188I	TCNGA	4 cut(s)	142, 492, 673, 1093
Hpy188III	TCNNGA	6 cut(s)	6, 225, 451, 620, 734, 956
Hpy8I	GTNNAC	2 cut(s)	254, 937
HpyAV	CCTTC	3 cut(s)	487, 668, 1047
HpyCH4III	ACNGT	3 cut(s)	30, 251, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 773
HpyF3I	CTNAG	3 cut(s)	281, 808, 970
Hsp92II	CATG	6 cut(s)	37, 260, 395, 569, 910, 1058
Kzo9I	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
LmnI	GCTCC	2 cut(s)	682, 772
LweI	GCATC	2 cut(s)	133, 478
MaeI	CTAG	4 cut(s)	225, 734, 897, 999
MaeIII	GTNAC	1 cut(s)	883
MalI	GATC	7 cut(s)	10, 261, 670, 732, 947, 995, 1128
MboI	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
MfeI	CAATTG	2 cut(s)	181, 866
MflI	RGATCY	2 cut(s)	668, 730
MhlI	GDGCHC	1 cut(s)	1037
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	56, 705, 838, 1093, 1134
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	4 cut(s)	116, 548, 792, 915
MslI	CAYNNNNRTG	2 cut(s)	383, 1053
MunI	CAATTG	2 cut(s)	181, 866
Mva1269I	GAATGC	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	335, 773
NdeI	CATATG	2 cut(s)	752, 841
NdeII	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
NlaIII	CATG	6 cut(s)	37, 260, 395, 569, 910, 1058
NlaIV	GGNNCC	1 cut(s)	684
NspI	RCATGY	2 cut(s)	37, 1058
PceI	AGGCCT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	571
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	684
PspPI	GGNCC	2 cut(s)	270, 761
PspPPI	RGGWCCY	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	668, 730
RsaI	GTAC	3 cut(s)	32, 353, 398
RsaNI	GTAC	3 cut(s)	31, 352, 397
RseI	CAYNNNNRTG	2 cut(s)	383, 1053
SaqAI	TTAA	4 cut(s)	116, 548, 792, 915
Sau3AI	GATC	7 cut(s)	8, 259, 668, 730, 945, 993, 1126
Sau96I	GGNCC	2 cut(s)	270, 761
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	2 cut(s)	133, 478
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	270, 761
SmiMI	CAYNNNNRTG	2 cut(s)	383, 1053
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	1008
SspI	AATATT	2 cut(s)	113, 560
SspMI	CTAG	4 cut(s)	225, 734, 897, 999
StuI	AGGCCT	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	30, 251, 351
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	513
TatI	WGTACW	2 cut(s)	30, 396
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	116, 548, 792, 915
Tru9I	TTAA	4 cut(s)	116, 548, 792, 915
TscAI	CASTG	2 cut(s)	411, 1106
TspDTI	ATGAA	4 cut(s)	620, 659, 1029, 1145
TspGWI	ACGGA	1 cut(s)	1006
TspRI	CASTG	2 cut(s)	411, 1106
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	270, 761
XapI	RAATTY	1 cut(s)	595
XbaI	TCTAGA	2 cut(s)	224, 733
XceI	RCATGY	2 cut(s)	37, 1058
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	4 cut(s)	225, 734, 897, 999
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.