Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

59531172 .. 59534454

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGGGTGTTGTAGAGGAAAAGTTAGTTCTTCTGAAGGCTGTGAGCGGTTCTTTCAGGCCAGGTGTTTTAACAGCTCTTATGGGTGTAAGTGGTGCTGGTAAAACGACTCTCATGGATGTACTGGCTGGTAGGAAAACTGGTGGATATATTGAAGGAGACATAAAAATTTCCGGGTACCCAAAGAAGCAAGAAACATTTGCTCGGATTTCTGGATATTGTGAGCAAAATGACATTCACTCCCCTCAAGTTACTGTCTACGAGTCAGTGCTCTACTCAGCATGGCTTCGTTTGCCACCTGAAGTAACATCTGAAACCAAAAAGGTGTTCATTGAGGAAGTGATGGAACTTGTGGAACTTAATCCATTAAGGCAAGCACTTGTTGGGTTGCCTGGTATCAATGGTCTTTCAACTGAGCAGCGCAAGAGGCTGACTATCGCAGTTGAGCTAGTGGCGAATCCCTCGGTAATATTCATGGATGAACCAACTTCGGGGTTAGATGCAAGAGCTGCTGCAATTGTCATGAGAACAGTTAGGAACACAGTGGATACTGGTAGAACAGTTGTGTGCACCATCCATCAGCCTAGCATTGACATTTTTGAATCTTTTGATGAGCTACTGCTACTGAAGCGGGGAGGACAAGAAATTTATGTTGGTCCATTAGGTCGCCATTCTTGCAATCTAATCAAATATTTTGAGGAAATTGAAGGAGTCCGTCAAATAAAAGATGGTTACAATCCAGCAACATGGATGTTGGATGTTTCCACTGCAGCACAAGAATTAGCTTTGGGGATTGATTTTGCTCATGTTTACAAAAACTCAGAACTATACAGGTCTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006869 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0010035 GO:0010193 GO:0010876 GO:0014070 GO:0015399 GO:0015405 GO:0015692 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030001 GO:0031224 GO:0033036 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043492 GO:0044425 GO:0044464 GO:0046677 GO:0046864 GO:0046865 GO:0046942 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071944 GO:0080168 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

281

Amino Acids

30.96

Weight (kDa)

5.41

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	12 - 164	4.7e-22	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	2 cut(s)	258, 836
AciI	CCGC	2 cut(s)	48, 631
AcsI	RAATTY	2 cut(s)	168, 645
AcuI	CTGAAG	3 cut(s)	56, 321, 647
AfaI	GTAC	2 cut(s)	123, 179
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	155, 411, 602, 707
AjnI	CCWGG	2 cut(s)	61, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	311, 343, 636, 668
AluBI	AGCT	5 cut(s)	77, 448, 509, 616, 785
AluI	AGCT	5 cut(s)	77, 448, 509, 616, 785
Alw21I	GWGCWC	2 cut(s)	273, 572
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	568
AoxI	GGCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	4 cut(s)	418, 509, 512, 770
ApoI	RAATTY	2 cut(s)	168, 645
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	273, 572
BbvI	GCAGC	4 cut(s)	430, 496, 499, 782
BccI	CCATC	4 cut(s)	337, 581, 585, 722
BciT130I	CCWGG	2 cut(s)	63, 393
BciVI	GTATCC	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	449, 585
BfmI	CTRYAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	4 cut(s)	419, 510, 513, 771
BlsI	GCNGC	4 cut(s)	420, 511, 514, 772
Bme1390I	CCNGG	3 cut(s)	63, 175, 393
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	3 cut(s)	63, 175, 393
BmsI	GCATC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	129, 145, 556
BseBI	CCWGG	2 cut(s)	63, 393
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	5 cut(s)	124, 484, 573, 756, 763
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	3 cut(s)	291, 405, 834
BseNI	ACTGG	3 cut(s)	129, 145, 556
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	4 cut(s)	430, 496, 499, 782
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	273, 572
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	273, 572
BspACI	CCGC	2 cut(s)	48, 631
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	290, 406, 833
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	129, 145, 556
BssECI	CCNNGG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	63, 393
Bst4CI	ACNGT	4 cut(s)	256, 532, 544, 562
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	277, 414, 820
BstF5I	GGATG	5 cut(s)	124, 484, 573, 756, 763
BstHHI	GCGC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 427, 509, 628, 675
BstNI	CCWGG	2 cut(s)	63, 393
BstSCI	CCNGG	3 cut(s)	61, 173, 391
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	430, 496, 499, 782
BstXI	CCANNNNNNTGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	124, 484, 573, 756, 763
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	273, 549, 765
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	2 cut(s)	122, 178
CviAII	CATG	6 cut(s)	115, 282, 475, 523, 747, 806
CviQI	GTAC	2 cut(s)	122, 178
DdeI	CTNAG	3 cut(s)	277, 414, 820
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	3 cut(s)	56, 321, 647
EcoRII	CCWGG	2 cut(s)	61, 391
FaeI	CATG	6 cut(s)	118, 285, 478, 526, 750, 809
FatI	CATG	6 cut(s)	114, 281, 474, 522, 746, 805
FauI	CCCGC	1 cut(s)	624
FblI	GTMKAC	2 cut(s)	258, 836
Fnu4HI	GCNGC	4 cut(s)	419, 510, 513, 771
FokI	GGATG	5 cut(s)	131, 491, 560, 763, 770
Fsp4HI	GCNGC	4 cut(s)	419, 510, 513, 771
FspBI	CTAG	2 cut(s)	449, 585
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	4 cut(s)	419, 510, 513, 771
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	6 cut(s)	118, 285, 478, 526, 750, 809
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	5 cut(s)	109, 263, 457, 602, 711
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	4 cut(s)	259, 570, 811, 837
Hpy188I	TCNGA	4 cut(s)	36, 207, 313, 823
Hpy188III	TCNNGA	2 cut(s)	213, 523
Hpy8I	GTNNAC	4 cut(s)	259, 570, 811, 837
HpyAV	CCTTC	3 cut(s)	31, 149, 701
HpyCH4III	ACNGT	4 cut(s)	256, 532, 544, 562
HpyCH4V	TGCA	5 cut(s)	503, 515, 570, 678, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 427, 509, 628, 675
HpyF3I	CTNAG	3 cut(s)	277, 414, 820
Hsp92II	CATG	6 cut(s)	118, 285, 478, 526, 750, 809
HspAI	GCGC	1 cut(s)	421
KpnI	GGTACC	1 cut(s)	181
Lsp1109I	GCAGC	4 cut(s)	430, 496, 499, 782
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	449, 585
MaeIII	GTNAC	3 cut(s)	250, 304, 731
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	273, 572
MluCI	AATT	6 cut(s)	168, 516, 645, 702, 779, 841
MlyI	GAGTC	3 cut(s)	103, 272, 720
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	7 cut(s)	10, 255, 328, 420, 472, 629, 691
MseI	TTAA	3 cut(s)	71, 360, 368
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	63, 175, 393
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	63, 393
MwoI	GCNNNNNNNGC	5 cut(s)	292, 427, 509, 628, 675
NciI	CCSGG	1 cut(s)	175
NlaIII	CATG	6 cut(s)	118, 285, 478, 526, 750, 809
NlaIV	GGNNCC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	457, 602
PkrI	GCNGC	4 cut(s)	420, 511, 514, 772
PleI	GAGTC	3 cut(s)	103, 271, 719
PpsI	GAGTC	3 cut(s)	103, 271, 719
Psp6I	CCWGG	2 cut(s)	61, 391
PspGI	CCWGG	2 cut(s)	61, 391
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	772
RsaI	GTAC	2 cut(s)	123, 179
RsaNI	GTAC	2 cut(s)	122, 178
SaqAI	TTAA	3 cut(s)	71, 360, 368
SatI	GCNGC	4 cut(s)	419, 510, 513, 771
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	3 cut(s)	103, 272, 720
ScrFI	CCNGG	3 cut(s)	63, 175, 393
SduI	GDGCHC	2 cut(s)	273, 572
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	6 cut(s)	168, 516, 645, 702, 779, 841
SsiI	CCGC	2 cut(s)	48, 631
SspI	AATATT	2 cut(s)	471, 692
SspMI	CTAG	2 cut(s)	449, 585
StyD4I	CCNGG	3 cut(s)	61, 173, 391
TaaI	ACNGT	4 cut(s)	256, 532, 544, 562
TasI	AATT	6 cut(s)	168, 516, 645, 702, 779, 841
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	457, 602
Tru1I	TTAA	3 cut(s)	71, 360, 368
Tru9I	TTAA	3 cut(s)	71, 360, 368
TscAI	CASTG	3 cut(s)	273, 549, 772
TseI	GCWGC	4 cut(s)	418, 509, 512, 770
TspDTI	ATGAA	3 cut(s)	319, 463, 495
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	3 cut(s)	273, 549, 772
VneI	GTGCAC	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	2 cut(s)	168, 645
XmiI	GTMKAC	2 cut(s)	258, 836
XspI	CTAG	2 cut(s)	449, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.