Rh2DG322900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
40425723 .. 40459081
33359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG322900.1

Sequence Viewer

Length: 1296 bp
ATGGCCACCGCGCTGCCATTGGATCCTCCGAAGATTGACTCAGAAGCCGCTGACACGGCGACCAAACCTAACCCTAATCCTTCAAATTTTGGTGGAGAAATGTCAAAGAGGGAAAACCAAGAAGCAAATCAATTTGGATTCCGGGTTCTTCTTGCTCTCTCTCCATTTCTACCCATCTTTCTTTTGCATAAAGATAAAATCGCAGAATTGCAGCAGCCATGGCCATCGCGCTGCCATTGGATCCTCCGAAGATTGACTCAGAAGCCGCTGACACGGAGACCAAACTATTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGAAGACAGTAAGCAAATATTCATACAACTCGATCATCCAAAACAGCAAAACCATGCACATGATGTTCAATGGGCATTCCGAGCTACCTCTTATGATATCTCAGCTCCCAGTCTTTTACAAGCAAAGGGATAATTACTTTCATCCTGCGTGGGCATGGTCTAGTGTTAATTTGCTCCTGCGCATACCTTACTCTATTATTGAAGCTGTCGTATGGTCTTGTGTCGTATACTACACAGTTGGTTTTGCCCCTGGTGCTGGGAAATTTTTCCGTTTCAGGTTTTTGCTATTTTCTGTGCACCAAATGGCTTTGGGTCTCTTCCAGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCGATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACATACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTGGTTTGTTAGCTTATGCATTGCTTTTCAATTGCAGAGTGACTCTGGCCTTAACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTGGAGTTGACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGTATTATGA

Protein Analysis

431

Amino Acids

48.64

Weight (kDa)

9.58

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 131 - 281 4.7e-38 ABC-2 type transporter
PDR_assoc PF08370 286 - 348 2.1e-22 Plant PDR ABC transporter associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 1272
AccI GTMKAC 2 cut(s) 564, 1234
AccII CGCG 3 cut(s) 11, 229, 822
AciI CCGC 4 cut(s) 9, 48, 266, 1272
AclWI GGATC 6 cut(s) 17, 30, 235, 248, 715, 866
AcoI YGGCCR 2 cut(s) 3, 221
AcsI RAATTY 3 cut(s) 85, 599, 839
AfaI GTAC 2 cut(s) 1013, 1034
AfiI CCNNNNNNNGG 4 cut(s) 593, 664, 1141, 1142
AgsI TTSAA 4 cut(s) 84, 406, 539, 985
AjnI CCWGG 1 cut(s) 586
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 7 cut(s) 421, 442, 542, 713, 869, 968, 1121
AluI AGCT 7 cut(s) 421, 442, 542, 713, 869, 968, 1121
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 2 cut(s) 271, 656
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 6 cut(s) 17, 30, 235, 248, 715, 866
AoxI GGCC 4 cut(s) 3, 221, 786, 1002
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 6 cut(s) 13, 211, 214, 231, 713, 1076
ApoI RAATTY 3 cut(s) 85, 599, 839
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 4 cut(s) 13, 231, 519, 824
AspS9I GGNCC 1 cut(s) 786
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 3 cut(s) 792, 941, 1275
BaeGI GKGCMC 1 cut(s) 636
BalI TGGCCA 2 cut(s) 5, 223
BamHI GGATCC 2 cut(s) 22, 240
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 5 cut(s) 218, 223, 226, 700, 1063
BccI CCATC 4 cut(s) 182, 232, 777, 1076
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 271, 656
BfaI CTAG 2 cut(s) 498, 1107
BfmI CTRYAG 1 cut(s) 1077
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 8 cut(s) 14, 48, 212, 215, 232, 266, 714, 1077
BlsI GCNGC 8 cut(s) 15, 49, 213, 216, 233, 267, 715, 1078
Bme1390I CCNGG 2 cut(s) 143, 588
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 2 cut(s) 24, 242
BmrFI CCNGG 2 cut(s) 143, 588
BmrI ACTGGG 2 cut(s) 440, 1130
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 2 cut(s) 440, 1130
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 1143
BpuMI CCSGG 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 271, 656
BsaJI CCNNGG 3 cut(s) 218, 586, 773
BsaXI ACNNNNNCTCC 2 cut(s) 1208, 1238
Bsc4I CCNNNNNNNGG 4 cut(s) 593, 664, 1141, 1142
Bse1I ACTGG 3 cut(s) 446, 1136, 1286
Bse3DI GCAATG 2 cut(s) 690, 974
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 218, 586, 773
BseGI GGATG 2 cut(s) 372, 478
BseLI CCNNNNNNNGG 4 cut(s) 593, 664, 1141, 1142
BseMI GCAATG 2 cut(s) 690, 974
BseMII CTCAG 3 cut(s) 54, 272, 452
BseNI ACTGG 3 cut(s) 446, 1136, 1286
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 5 cut(s) 218, 223, 226, 700, 1063
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 3 cut(s) 11, 229, 822
BshFI GGCC 4 cut(s) 5, 223, 788, 1004
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 593, 664, 1141, 1142
BsmAI GTCTC 2 cut(s) 271, 656
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 4 cut(s) 5, 223, 788, 1004
Bso31I GGTCTC 2 cut(s) 271, 656
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
Bsp19I CCATGG 2 cut(s) 218, 773
BspACI CCGC 4 cut(s) 9, 48, 266, 1272
BspANI GGCC 4 cut(s) 5, 223, 788, 1004
BspCNI CTCAG 3 cut(s) 53, 271, 451
BspFNI CGCG 3 cut(s) 11, 229, 822
BspLI GGNNCC 2 cut(s) 24, 242
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 6 cut(s) 17, 30, 235, 248, 715, 866
BspTNI GGTCTC 2 cut(s) 271, 656
BsrBI CCGCTC 1 cut(s) 1272
BsrDI GCAATG 2 cut(s) 690, 974
BsrI ACTGG 3 cut(s) 446, 1136, 1286
BssECI CCNNGG 3 cut(s) 218, 586, 773
BssMI GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
BssNAI GTATAC 2 cut(s) 565, 1235
BssT1I CCWWGG 2 cut(s) 218, 773
Bst1107I GTATAC 2 cut(s) 565, 1235
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 5 cut(s) 346, 574, 664, 1042, 1102
Bst6I CTCTTC 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 674
BstDEI CTNAG 4 cut(s) 40, 258, 438, 1025
BstDSI CCRYGG 2 cut(s) 218, 773
BstF5I GGATG 2 cut(s) 372, 478
BstFNI CGCG 3 cut(s) 11, 229, 822
BstHHI GCGC 4 cut(s) 13, 231, 519, 824
BstKTI GATC 6 cut(s) 25, 243, 372, 710, 861, 1152
BstMAI GTCTC 2 cut(s) 271, 656
BstMBI GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
BstMWI GCNNNNNNNGC 6 cut(s) 56, 220, 418, 590, 674, 778
BstNI CCWGG 1 cut(s) 588
BstSCI CCNGG 2 cut(s) 141, 586
BstSFI CTRYAG 1 cut(s) 1077
BstSLI GKGCMC 1 cut(s) 636
BstUI CGCG 3 cut(s) 11, 229, 822
BstV1I GCAGC 5 cut(s) 218, 223, 226, 700, 1063
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 2 cut(s) 22, 240
BstYI RGATCY 2 cut(s) 22, 240
BstZ17I GTATAC 2 cut(s) 565, 1235
BsuRI GGCC 4 cut(s) 5, 223, 788, 1004
BtgI CCRYGG 2 cut(s) 218, 773
BtgZI GCGATG 2 cut(s) 210, 796
BtsCI GGATG 2 cut(s) 372, 478
BtsIMutI CAGTG 2 cut(s) 669, 1047
CfoI GCGC 4 cut(s) 13, 231, 519, 824
Cfr13I GGNCC 1 cut(s) 786
Csp6I GTAC 2 cut(s) 1012, 1033
CviAII CATG 5 cut(s) 219, 391, 397, 492, 774
CviQI GTAC 2 cut(s) 1012, 1033
DdeI CTNAG 4 cut(s) 40, 258, 438, 1025
DpnI GATC 6 cut(s) 24, 242, 371, 709, 860, 1151
DpnII GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
EaeI YGGCCR 2 cut(s) 3, 221
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 218, 773
Eco31I GGTCTC 2 cut(s) 271, 656
Eco32I GATATC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 586
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 218, 773
EcoT22I ATGCAT 1 cut(s) 976
ErhI CCWWGG 2 cut(s) 218, 773
FaeI CATG 5 cut(s) 222, 394, 400, 495, 777
FatI CATG 5 cut(s) 218, 390, 396, 491, 773
FauNDI CATATG 1 cut(s) 811
FblI GTMKAC 2 cut(s) 564, 1234
Fnu4HI GCNGC 8 cut(s) 14, 48, 212, 215, 232, 266, 714, 1077
FokI GGATG 2 cut(s) 359, 465
Fsp4HI GCNGC 8 cut(s) 14, 48, 212, 215, 232, 266, 714, 1077
FspBI CTAG 2 cut(s) 498, 1107
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 4 cut(s) 12, 230, 518, 823
GluI GCNGC 8 cut(s) 14, 48, 212, 215, 232, 266, 714, 1077
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 1143
HaeIII GGCC 4 cut(s) 5, 223, 788, 1004
HapII CCGG 1 cut(s) 142
HhaI GCGC 4 cut(s) 13, 231, 519, 824
Hin1II CATG 5 cut(s) 222, 394, 400, 495, 777
Hin6I GCGC 4 cut(s) 11, 229, 517, 822
HinP1I GCGC 4 cut(s) 11, 229, 517, 822
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HinfI GANTC 7 cut(s) 38, 138, 256, 744, 997, 1069, 1241
HpaII CCGG 1 cut(s) 142
HphI GGTGA 3 cut(s) 792, 941, 1275
Hpy166II GTNNAC 5 cut(s) 565, 634, 1129, 1204, 1235
Hpy188I TCNGA 6 cut(s) 30, 43, 248, 261, 307, 418
Hpy188III TCNNGA 2 cut(s) 658, 862
Hpy8I GTNNAC 5 cut(s) 565, 634, 1129, 1204, 1235
HpyAV CCTTC 2 cut(s) 90, 1058
HpyCH4III ACNGT 5 cut(s) 346, 574, 664, 1042, 1102
HpyCH4IV ACGT 1 cut(s) 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 220, 418, 590, 674, 778
HpyF3I CTNAG 4 cut(s) 40, 258, 438, 1025
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 5 cut(s) 222, 394, 400, 495, 777
HspAI GCGC 4 cut(s) 11, 229, 517, 822
Kzo9I GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
LmnI GCTCC 3 cut(s) 447, 516, 874
Lsp1109I GCAGC 5 cut(s) 218, 223, 226, 700, 1063
LweI GCATC 1 cut(s) 677
MaeI CTAG 2 cut(s) 498, 1107
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 3 cut(s) 994, 1189, 1224
MalI GATC 6 cut(s) 24, 242, 371, 709, 860, 1151
MbiI CCGCTC 1 cut(s) 1272
MboI GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
MboII GAAGA 5 cut(s) 43, 140, 261, 352, 646
MfeI CAATTG 2 cut(s) 888, 985
MflI RGATCY 2 cut(s) 22, 240
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 2 cut(s) 5, 223
MluNI TGGCCA 2 cut(s) 5, 223
MlyI GAGTC 4 cut(s) 32, 250, 991, 1078
MnlI CCTC 6 cut(s) 36, 102, 254, 303, 435, 914
Mox20I TGGCCA 2 cut(s) 5, 223
Mph1103I ATGCAT 1 cut(s) 976
MroXI GAANNNNTTC 1 cut(s) 602
MscI TGGCCA 2 cut(s) 5, 223
MseI TTAA 5 cut(s) 504, 768, 875, 1007, 1169
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 2 cut(s) 5, 223
MspA1I CMGCKG 3 cut(s) 50, 268, 713
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 143, 588
MunI CAATTG 2 cut(s) 888, 985
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 3 cut(s) 11, 229, 822
MwoI GCNNNNNNNGC 6 cut(s) 56, 220, 418, 590, 674, 778
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 2 cut(s) 218, 773
NdeI CATATG 1 cut(s) 811
NdeII GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
NlaIII CATG 5 cut(s) 222, 394, 400, 495, 777
NlaIV GGNNCC 2 cut(s) 24, 242
NmuCI GTSAC 2 cut(s) 994, 1224
NsbI TGCGCA 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 976
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 3 cut(s) 138, 744, 1241
PflFI GACNNNGTC 1 cut(s) 1102
PflMI CCANNNNNTGG 1 cut(s) 664
PkrI GCNGC 8 cut(s) 15, 49, 213, 216, 233, 267, 715, 1078
PleI GAGTC 4 cut(s) 32, 250, 991, 1077
PpsI GAGTC 4 cut(s) 32, 250, 991, 1077
Psp6I CCWGG 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 24, 242
PspPI GGNCC 1 cut(s) 786
PsrI GAACNNNNNNTAC 2 cut(s) 903, 935
PstI CTGCAG 1 cut(s) 1081
PsuI RGATCY 2 cut(s) 22, 240
PsyI GACNNNGTC 1 cut(s) 1102
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 2 cut(s) 1013, 1034
RsaNI GTAC 2 cut(s) 1012, 1033
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 5 cut(s) 504, 768, 875, 1007, 1169
SatI GCNGC 8 cut(s) 14, 48, 212, 215, 232, 266, 714, 1077
Sau3AI GATC 6 cut(s) 22, 240, 369, 707, 858, 1149
Sau96I GGNCC 1 cut(s) 786
SchI GAGTC 4 cut(s) 32, 250, 991, 1078
ScrFI CCNGG 2 cut(s) 143, 588
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 1 cut(s) 1077
SmiMI CAYNNNNRTG 1 cut(s) 395
SsiI CCGC 4 cut(s) 9, 48, 266, 1272
SspI AATATT 1 cut(s) 356
SspMI CTAG 2 cut(s) 498, 1107
StyD4I CCNGG 2 cut(s) 141, 586
StyI CCWWGG 2 cut(s) 218, 773
TaaI ACNGT 5 cut(s) 346, 574, 664, 1042, 1102
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 3 cut(s) 368, 1244, 1262
TauI GCSGC 2 cut(s) 50, 268
TfiI GAWTC 3 cut(s) 138, 744, 1241
Tru1I TTAA 5 cut(s) 504, 768, 875, 1007, 1169
Tru9I TTAA 5 cut(s) 504, 768, 875, 1007, 1169
TscAI CASTG 2 cut(s) 669, 1047
TseFI GTSAC 2 cut(s) 994, 1224
TseI GCWGC 6 cut(s) 13, 211, 214, 231, 713, 1076
Tsp45I GTSAC 2 cut(s) 994, 1224
TspDTI ATGAA 4 cut(s) 348, 467, 852, 1235
TspGWI ACGGA 2 cut(s) 289, 596
TspRI CASTG 2 cut(s) 669, 1047
Tth111I GACNNNGTC 1 cut(s) 1102
Van91I CCANNNNNTGG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 632
XapI RAATTY 3 cut(s) 85, 599, 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 780
XmiI GTMKAC 2 cut(s) 564, 1234
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 2 cut(s) 498, 1107
Zsp2I ATGCAT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.