pycom16g12200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
8503173 .. 8505741
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g12200.3

Sequence Viewer

Length: 1401 bp
ATGAGAAAGCGGGGCTTTACACAGAGAAGGCTTCAGCTCCTATCTGATATTACAGGTTCTTTCGGGCCAGGTATTCTAACGGCATTAATGGGAGTCAGCGGGGCTGGGAAAACAACTCTCATGGATGTTCTTTGTGGAAGGAAAACTGGTGGTACCATTGAAGGGGAGATAAGAATTGGAGGGTACCCTAAGGTTCAAGATACATTTGCTAGGGTATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACTGTCGAAGAATCAGTCGTATATTCTGCTTGGCTGCGCCTCCCTTCTCATATCGATTCTAATACTAAAGCCGTATGCTATCTTTTCAAGAACATGAGTATTTCAATGGTGCTTGAGTTGAACATTCAAATTAAATTGCATGATAATTTTTTTTCCTTCCTTCACCAGGAATTTGTAAAGGAGGTCCTCGAAACTATTGAGCTAGACGGGATTAAAGATTGCTTAGTGGGGATGGCAGGAGTAAGTGGTTTATCAACTGAGCAGCGCAAACGGCTTACCATAGCTGTGGAATTCGTTGCCAATCCATCGATCATGTTCATGGATGAACCAACTTCAGGTTTAGATGCGCGGGCAGCTGCTATTGTCATGAGAGCAGTGAAAAATGTTGCTGCAACAGGAAGAACGGTTGTTTGCACCATCCATCAACCAAGTATTGATATTTTCGAGGCATTTGATGAGCAAGACCTCTTCAATATGTATGGTTCAATGTTCTGTGCAGTAATATTCTTTGGCATAAACAATTGCTCAACAGTTCTACCATACGTTGCCACAGAGCGGAATGTTCTATACCGAGAAAGATTTGCAGGAATGTTCTCTTCATGGGCCTATTCGTTCGCACAGGTACTGGTTGAGGTTCCTTACTCGTTCACTCAAGCAGTTATTTATGTTGCGATCACATACCCAATGATCGGTTACCAGTGGTCTGCCTACAAGATATTTTGGTCGTTCTATAGCATGTTCTGCATACTACTAAGCTTCAATTACCTAGGAATGCTGATAGTGTCGTTGACACCAAATGTTCAGGTGGCCGCGATCGTGGCTTCAGCTTCGTACGCAATGCTGAACTTGTTTTCCGGGTTTGTCATTCCAAGGCCGCACATACCGAAGTGGTGGCTCTGGTTGTATTATTTATCCCCTACATCATGGGCCCTAAACGGAATGCTTACCTCGCAGTATGGAGATATGCAGAAGGAAATCCAGGCGTTCGGAGAGACTAAAACTGTCGCTGCCTTCCTAGAAGATTACTTCGGGTTTGACTACAACCTTTTAGGCCTTGTTGCTGCTGTTTCTATTCTCCTCCCCATTGCGTTTGCTTCTCTTTTCGCATACTTCATTGGAAAGTTAAACTTCCAGAGGAGGTAG

Protein Analysis

467

Amino Acids

52.27

Weight (kDa)

6.33

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 152, 183
AccB1I GGYRCC 2 cut(s) 152, 183
AccBSI CCGCTC 1 cut(s) 814
AccII CGCG 2 cut(s) 607, 1070
AciI CCGC 6 cut(s) 10, 99, 607, 814, 1068, 1133
AcoI YGGCCR 1 cut(s) 1065
AcsI RAATTY 2 cut(s) 428, 548
AcuI CTGAAG 3 cut(s) 17, 576, 1065
AfaI GTAC 4 cut(s) 154, 185, 882, 1091
AfiI CCNNNNNNNGG 5 cut(s) 162, 424, 593, 813, 947
AgsI TTSAA 9 cut(s) 161, 197, 346, 363, 379, 386, 730, 744, 1018
AjnI CCWGG 3 cut(s) 67, 423, 1236
AloI GAACNNNNNNTCC 2 cut(s) 1094, 1126
AluBI AGCT 6 cut(s) 37, 460, 542, 614, 1014, 1085
AluI AGCT 6 cut(s) 37, 460, 542, 614, 1014, 1085
Alw26I GTCTC 1 cut(s) 1244
AlwNI CAGNNNCTG 1 cut(s) 883
AoxI GGCC 6 cut(s) 65, 861, 1065, 1130, 1185, 1309
ApaI GGGCCC 1 cut(s) 1189
ApeKI GCWGC 7 cut(s) 292, 520, 611, 614, 647, 1265, 1319
ApoI RAATTY 2 cut(s) 428, 548
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AseI ATTAAT 1 cut(s) 86
Asp718I GGTACC 2 cut(s) 152, 183
AspA2I CCTAGG 1 cut(s) 1024
AspLEI GCGC 3 cut(s) 297, 525, 607
AspS9I GGNCC 5 cut(s) 65, 442, 861, 1185, 1186
AsuC2I CCSGG 1 cut(s) 1114
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 442
AvrII CCTAGG 1 cut(s) 1024
AxyI CCTNAGG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 1189
BanI GGYRCC 2 cut(s) 152, 183
BanII GRGCYC 1 cut(s) 1189
BbvI GCAGC 7 cut(s) 279, 532, 601, 623, 634, 1252, 1306
BccI CCATC 4 cut(s) 484, 571, 683, 687
BceAI ACGGC 3 cut(s) 96, 314, 545
BciT130I CCWGG 3 cut(s) 69, 425, 1238
BcnI CCSGG 1 cut(s) 1114
BcoDI GTCTC 1 cut(s) 1244
BfaI CTAG 4 cut(s) 210, 461, 1025, 1274
BfmI CTRYAG 1 cut(s) 988
BisI GCNGC 9 cut(s) 293, 521, 612, 615, 648, 1068, 1133, 1266, 1320
BlnI CCTAGG 1 cut(s) 1024
BlsI GCNGC 9 cut(s) 294, 522, 613, 616, 649, 1069, 1134, 1267, 1321
Bme1390I CCNGG 4 cut(s) 69, 425, 1114, 1238
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 5 cut(s) 65, 442, 861, 1185, 1186
BmiI GGNNCC 4 cut(s) 154, 185, 894, 1187
BmrFI CCNGG 4 cut(s) 69, 425, 1114, 1238
BmsI GCATC 1 cut(s) 592
BpuEI CTTGAG 2 cut(s) 392, 894
BpuMI CCSGG 1 cut(s) 1114
Bsa29I ATCGAT 2 cut(s) 312, 566
BsaJI CCNNGG 2 cut(s) 1024, 1127
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 424, 593, 813, 947
Bse1I ACTGG 3 cut(s) 151, 888, 955
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 1101, 1341
BseBI CCWGG 3 cut(s) 69, 425, 1238
BseCI ATCGAT 2 cut(s) 312, 566
BseDI CCNNGG 2 cut(s) 1024, 1127
BseGI GGATG 4 cut(s) 130, 495, 586, 675
BseLI CCNNNNNNNGG 5 cut(s) 162, 424, 593, 813, 947
BseMI GCAATG 2 cut(s) 1101, 1341
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 3 cut(s) 151, 888, 955
BseRI GAGGAG 1 cut(s) 1325
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 7 cut(s) 279, 532, 601, 623, 634, 1252, 1306
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 2 cut(s) 607, 1070
Bsh1285I CGRYCG 1 cut(s) 1074
BshFI GGCC 6 cut(s) 67, 863, 1067, 1132, 1187, 1311
BshNI GGYRCC 2 cut(s) 152, 183
BshVI ATCGAT 2 cut(s) 312, 566
BsiEI CGRYCG 1 cut(s) 1074
BsiSI CCGG 1 cut(s) 1113
BsiWI CGTACG 1 cut(s) 1089
BslI CCNNNNNNNGG 5 cut(s) 162, 424, 593, 813, 947
BsmAI GTCTC 1 cut(s) 1244
BsmI GAATGC 2 cut(s) 1035, 1203
BsnI GGCC 6 cut(s) 67, 863, 1067, 1132, 1187, 1311
Bsp120I GGGCCC 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp143I GATC 4 cut(s) 567, 930, 945, 1071
BspACI CCGC 6 cut(s) 10, 99, 607, 814, 1068, 1133
BspANI GGCC 6 cut(s) 67, 863, 1067, 1132, 1187, 1311
BspCNI CTCAG 1 cut(s) 508
BspDI ATCGAT 2 cut(s) 312, 566
BspFNI CGCG 2 cut(s) 607, 1070
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 4 cut(s) 154, 185, 894, 1187
BspT107I GGYRCC 2 cut(s) 152, 183
BsrBI CCGCTC 1 cut(s) 814
BsrDI GCAATG 2 cut(s) 1101, 1341
BsrI ACTGG 3 cut(s) 151, 888, 955
BssECI CCNNGG 2 cut(s) 1024, 1127
BssMI GATC 4 cut(s) 567, 930, 945, 1071
BssT1I CCWWGG 2 cut(s) 1024, 1127
Bst2UI CCWGG 3 cut(s) 69, 425, 1238
Bst4CI ACNGT 5 cut(s) 227, 262, 664, 790, 1261
Bst6I CTCTTC 2 cut(s) 731, 859
BstAPI GCANNNNNTGC 1 cut(s) 999
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 189, 481, 516, 1010
BstEII GGTNACC 1 cut(s) 950
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 4 cut(s) 130, 495, 586, 675
BstFNI CGCG 2 cut(s) 607, 1070
BstHHI GCGC 3 cut(s) 297, 525, 607
BstKTI GATC 4 cut(s) 570, 933, 948, 1074
BstMAI GTCTC 1 cut(s) 1244
BstMBI GATC 4 cut(s) 567, 930, 945, 1071
BstMCI CGRYCG 1 cut(s) 1074
BstMWI GCNNNNNNNGC 6 cut(s) 529, 611, 999, 1076, 1091, 1207
BstNI CCWGG 3 cut(s) 69, 425, 1238
BstNSI RCATGY 1 cut(s) 997
BstPI GGTNACC 1 cut(s) 950
BstSCI CCNGG 4 cut(s) 67, 423, 1112, 1236
BstSFI CTRYAG 1 cut(s) 988
BstSLI GKGCMC 1 cut(s) 1189
BstUI CGCG 2 cut(s) 607, 1070
BstV1I GCAGC 7 cut(s) 279, 532, 601, 623, 634, 1252, 1306
BstXI CCANNNNNNTGG 1 cut(s) 544
Bsu15I ATCGAT 2 cut(s) 312, 566
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 6 cut(s) 67, 863, 1067, 1132, 1187, 1311
BsuTUI ATCGAT 2 cut(s) 312, 566
BtsCI GGATG 4 cut(s) 130, 495, 586, 675
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 639, 962
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 883
CciI TCATGA 1 cut(s) 624
CfoI GCGC 3 cut(s) 297, 525, 607
Cfr13I GGNCC 5 cut(s) 65, 442, 861, 1185, 1186
ClaI ATCGAT 2 cut(s) 312, 566
Csp6I GTAC 4 cut(s) 153, 184, 881, 1090
CviAII CATG 9 cut(s) 121, 352, 398, 571, 577, 625, 858, 994, 1182
CviQI GTAC 4 cut(s) 153, 184, 881, 1090
DdeI CTNAG 4 cut(s) 189, 481, 516, 1010
DpnI GATC 4 cut(s) 569, 932, 947, 1073
DpnII GATC 4 cut(s) 567, 930, 945, 1071
EaeI YGGCCR 1 cut(s) 1065
Eam1104I CTCTTC 2 cut(s) 731, 859
EarI CTCTTC 2 cut(s) 731, 859
Eco130I CCWWGG 2 cut(s) 1024, 1127
Eco147I AGGCCT 1 cut(s) 1311
Eco24I GRGCYC 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 3 cut(s) 17, 576, 1065
Eco81I CCTNAGG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 950
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 2 cut(s) 442, 1186
EcoO65I GGTNACC 1 cut(s) 950
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 67, 423, 1236
EcoT14I CCWWGG 2 cut(s) 1024, 1127
EcoT38I GRGCYC 1 cut(s) 1189
ErhI CCWWGG 2 cut(s) 1024, 1127
FaeI CATG 9 cut(s) 124, 355, 401, 574, 580, 628, 861, 997, 1185
FalI AAGNNNNNCTT 2 cut(s) 31, 1370
FatI CATG 9 cut(s) 120, 351, 397, 570, 576, 624, 857, 993, 1181
FauI CCCGC 3 cut(s) 3, 92, 600
Fnu4HI GCNGC 9 cut(s) 293, 521, 612, 615, 648, 1068, 1133, 1266, 1320
FokI GGATG 4 cut(s) 137, 502, 593, 662
FriOI GRGCYC 1 cut(s) 1189
Fsp4HI GCNGC 9 cut(s) 293, 521, 612, 615, 648, 1068, 1133, 1266, 1320
FspBI CTAG 4 cut(s) 210, 461, 1025, 1274
GlaI GCGC 3 cut(s) 296, 524, 606
GluI GCNGC 9 cut(s) 293, 521, 612, 615, 648, 1068, 1133, 1266, 1320
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 6 cut(s) 67, 863, 1067, 1132, 1187, 1311
HapII CCGG 1 cut(s) 1113
HhaI GCGC 3 cut(s) 297, 525, 607
Hin1II CATG 9 cut(s) 124, 355, 401, 574, 580, 628, 861, 997, 1185
Hin6I GCGC 3 cut(s) 295, 523, 605
HinP1I GCGC 3 cut(s) 295, 523, 605
HincII GTYRAC 1 cut(s) 1047
HindII GTYRAC 1 cut(s) 1047
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 3 cut(s) 93, 269, 314
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 906, 1047
Hpy188I TCNGA 2 cut(s) 46, 1247
Hpy188III TCNNGA 4 cut(s) 197, 346, 625, 1390
Hpy8I GTNNAC 2 cut(s) 906, 1047
HpyAV CCTTC 8 cut(s) 21, 132, 155, 312, 424, 428, 1222, 1279
HpyCH4III ACNGT 5 cut(s) 227, 262, 664, 790, 1261
HpyCH4IV ACGT 1 cut(s) 801
HpyCH4V TGCA 7 cut(s) 397, 650, 672, 755, 842, 1002, 1225
HpyF10VI GCNNNNNNNGC 6 cut(s) 529, 611, 999, 1076, 1091, 1207
HpyF3I CTNAG 4 cut(s) 189, 481, 516, 1010
HpySE526I ACGT 1 cut(s) 801
Hsp92II CATG 9 cut(s) 124, 355, 401, 574, 580, 628, 861, 997, 1185
HspAI GCGC 3 cut(s) 295, 523, 605
KpnI GGTACC 2 cut(s) 156, 187
Kzo9I GATC 4 cut(s) 567, 930, 945, 1071
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 7 cut(s) 279, 532, 601, 623, 634, 1252, 1306
LweI GCATC 1 cut(s) 592
MaeI CTAG 4 cut(s) 210, 461, 1025, 1274
MaeII ACGT 1 cut(s) 801
MaeIII GTNAC 1 cut(s) 950
MalI GATC 4 cut(s) 569, 932, 947, 1073
MbiI CCGCTC 1 cut(s) 814
MboI GATC 4 cut(s) 567, 930, 945, 1071
MboII GAAGA 5 cut(s) 278, 669, 718, 846, 1289
MfeI CAATTG 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 1189
MluCI AATT 8 cut(s) 174, 387, 392, 403, 428, 548, 778, 1018
MlyI GAGTC 1 cut(s) 102
MseI TTAA 4 cut(s) 86, 390, 471, 1382
MslI CAYNNNNRTG 2 cut(s) 542, 575
MspA1I CMGCKG 2 cut(s) 99, 614
MspI CCGG 1 cut(s) 1113
MspR9I CCNGG 4 cut(s) 69, 425, 1114, 1238
MunI CAATTG 1 cut(s) 778
Mva1269I GAATGC 2 cut(s) 1035, 1203
MvaI CCWGG 3 cut(s) 69, 425, 1238
MvnI CGCG 2 cut(s) 607, 1070
MwoI GCNNNNNNNGC 6 cut(s) 529, 611, 999, 1076, 1091, 1207
NciI CCSGG 1 cut(s) 1114
NdeII GATC 4 cut(s) 567, 930, 945, 1071
NlaIII CATG 9 cut(s) 124, 355, 401, 574, 580, 628, 861, 997, 1185
NlaIV GGNNCC 4 cut(s) 154, 185, 894, 1187
NspI RCATGY 1 cut(s) 997
PagI TCATGA 1 cut(s) 624
PceI AGGCCT 1 cut(s) 1311
PctI GAATGC 2 cut(s) 1035, 1203
PfeI GAWTC 2 cut(s) 269, 314
Pfl23II CGTACG 1 cut(s) 1089
PkrI GCNGC 9 cut(s) 294, 522, 613, 616, 649, 1069, 1134, 1267, 1321
Ple19I CGATCG 1 cut(s) 1074
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 67, 423, 1236
PspEI GGTNACC 1 cut(s) 950
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 3 cut(s) 67, 423, 1236
PspLI CGTACG 1 cut(s) 1089
PspN4I GGNNCC 4 cut(s) 154, 185, 894, 1187
PspOMI GGGCCC 1 cut(s) 1185
PspPI GGNCC 5 cut(s) 65, 442, 861, 1185, 1186
PspPPI RGGWCCY 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 883
PvuI CGATCG 1 cut(s) 1074
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 4 cut(s) 154, 185, 882, 1091
RsaNI GTAC 4 cut(s) 153, 184, 881, 1090
RseI CAYNNNNRTG 2 cut(s) 542, 575
SaqAI TTAA 4 cut(s) 86, 390, 471, 1382
SatI GCNGC 9 cut(s) 293, 521, 612, 615, 648, 1068, 1133, 1266, 1320
Sau3AI GATC 4 cut(s) 567, 930, 945, 1071
Sau96I GGNCC 5 cut(s) 65, 442, 861, 1185, 1186
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 4 cut(s) 69, 425, 1114, 1238
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 988
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 542, 575
SmlI CTYRAG 2 cut(s) 371, 909
SmoI CTYRAG 2 cut(s) 371, 909
Sse9I AATT 8 cut(s) 174, 387, 392, 403, 428, 548, 778, 1018
SseBI AGGCCT 1 cut(s) 1311
SsiI CCGC 6 cut(s) 10, 99, 607, 814, 1068, 1133
SspI AATATT 1 cut(s) 762
SspMI CTAG 4 cut(s) 210, 461, 1025, 1274
StuI AGGCCT 1 cut(s) 1311
StyD4I CCNGG 4 cut(s) 67, 423, 1112, 1236
StyI CCWWGG 2 cut(s) 1024, 1127
TaaI ACNGT 5 cut(s) 227, 262, 664, 790, 1261
TaiI ACGT 1 cut(s) 804
TaqI TCGA 5 cut(s) 264, 312, 447, 566, 702
TasI AATT 8 cut(s) 174, 387, 392, 403, 428, 548, 778, 1018
TauI GCSGC 2 cut(s) 1070, 1135
TfiI GAWTC 2 cut(s) 269, 314
Tru1I TTAA 4 cut(s) 86, 390, 471, 1382
Tru9I TTAA 4 cut(s) 86, 390, 471, 1382
TscAI CASTG 2 cut(s) 639, 962
TseI GCWGC 7 cut(s) 292, 520, 611, 614, 647, 1265, 1319
TspDTI ATGAA 4 cut(s) 565, 597, 846, 1360
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 2 cut(s) 639, 962
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 2 cut(s) 428, 548
XceI RCATGY 1 cut(s) 997
XmaJI CCTAGG 1 cut(s) 1024
XspI CTAG 4 cut(s) 210, 461, 1025, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.