Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

21786270 .. 21790965

Gene Structure 4696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG130400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGTAATGATTTTCTAAAGATATACAACTCCACCAACATTCAACTACTAATGGAACGTGAACATCCTGAAGAAATACTTGATAGGGTGACATTCTTTGGCCTTGTATACTCATCAAGCAAGAAAGATCCAACTAACCCTCAGCTTAGTAATGAGGAAGTTAAGAAAAAATTTGTTGCATTTGTTGGATTTGTGACATGCACAACGTTTCCTAGATGGCAATTACACCCCACAGATGAAATAAATGGCAACCTTTATCTTTCTTGCTTATTCTTTGGGTTAGTGCACATGATGTTCAATGGCCATTCCGAGCTACCTCTTATGATATCTCAGCTCCCAGTCTTTTACAAGCAAAGGGATAATTACTTTCATCCTGCGTGGGCATGGTCTAGTGTTAATTTGCTTTTGCGCATACCTTACTCTATTATTGAAGCTGTTGTATGGTCTTGTGTAGTATACTACACAGTTGGTTTTGCCCCTGGTGCTGGGAAATTTTTCTGTTTCATGTTTTTGCTATTTTCTATGCACCAAATGGCTTTGGGTCTCTTCCGGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGAAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACATACCAAATGGTGATTACTGGTATTGGATTGGAGTTGGTGGTTTGTTAGCTTATGCATTGCTTTTCAATTGCGCAGTGACTCTGGCCTTGACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTGGAGTTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATTAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

395

Amino Acids

44.73

Weight (kDa)

8.51

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	61 - 245	6.4e-43	ABC-2 type transporter
PDR_assoc	PF08370	250 - 312	9.3e-23	Plant PDR ABC transporter associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	410, 883
AccBSI	CCGCTC	1 cut(s)	1168
AccI	GTMKAC	3 cut(s)	108, 456, 1130
AccII	CGCG	1 cut(s)	714
AccIII	TCCGGA	1 cut(s)	549
AciI	CCGC	1 cut(s)	1168
AclI	AACGTT	1 cut(s)	206
AclWI	GGATC	3 cut(s)	122, 607, 758
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	3 cut(s)	170, 491, 731
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	905, 926
AfiI	CCNNNNNNNGG	4 cut(s)	485, 556, 1033, 1034
AgsI	TTSAA	4 cut(s)	44, 298, 431, 877
AjnI	CCWGG	2 cut(s)	478, 1181
AluBI	AGCT	8 cut(s)	145, 313, 334, 434, 605, 761, 860, 1013
AluI	AGCT	8 cut(s)	145, 313, 334, 434, 605, 761, 860, 1013
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	548
Alw44I	GTGCAC	1 cut(s)	284
AlwI	GGATC	3 cut(s)	122, 607, 758
Aor13HI	TCCGGA	1 cut(s)	549
AoxI	GGCC	4 cut(s)	100, 301, 678, 894
ApaLI	GTGCAC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	605, 968
ApoI	RAATTY	3 cut(s)	170, 491, 731
AseI	ATTAAT	1 cut(s)	1068
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	3 cut(s)	411, 716, 884
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	100, 684, 833, 1171
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	592, 955
BccI	CCATC	2 cut(s)	210, 968
BciT130I	CCWGG	2 cut(s)	480, 1183
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	3 cut(s)	213, 390, 999
BfmI	CTRYAG	1 cut(s)	969
BisI	GCNGC	2 cut(s)	606, 969
BlsI	GCNGC	2 cut(s)	607, 970
Bme1390I	CCNGG	2 cut(s)	480, 1183
BmgT120I	GGNCC	1 cut(s)	678
BmrFI	CCNGG	2 cut(s)	480, 1183
BmrI	ACTGGG	2 cut(s)	332, 1022
BmsI	GCATC	1 cut(s)	569
BmuI	ACTGGG	2 cut(s)	332, 1022
BpmI	CTGGAG	1 cut(s)	1035
Bpu10I	CCTNAGC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	478, 665
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	1104, 1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	485, 556, 1033, 1034
Bse1I	ACTGG	3 cut(s)	338, 833, 1028
Bse3DI	GCAATG	2 cut(s)	582, 866
BseAI	TCCGGA	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	480, 1183
BseDI	CCNNGG	2 cut(s)	478, 665
BseGI	GGATG	2 cut(s)	64, 370
BseLI	CCNNNNNNNGG	4 cut(s)	485, 556, 1033, 1034
BseMI	GCAATG	2 cut(s)	582, 866
BseMII	CTCAG	2 cut(s)	155, 344
BseNI	ACTGG	3 cut(s)	338, 833, 1028
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	592, 955
BseYI	CCCAGC	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	4 cut(s)	102, 303, 680, 896
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	550
BslI	CCNNNNNNNGG	4 cut(s)	485, 556, 1033, 1034
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	4 cut(s)	102, 303, 680, 896
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	127, 599, 750, 1041
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	1 cut(s)	1168
BspANI	GGCC	4 cut(s)	102, 303, 680, 896
BspCNI	CTCAG	2 cut(s)	154, 343
BspEI	TCCGGA	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	714
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	3 cut(s)	122, 607, 758
BspTNI	GGTCTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	2 cut(s)	582, 866
BsrI	ACTGG	3 cut(s)	338, 833, 1028
BssECI	CCNNGG	2 cut(s)	478, 665
BssMI	GATC	4 cut(s)	127, 599, 750, 1041
BssNAI	GTATAC	3 cut(s)	109, 457, 1131
BssT1I	CCWWGG	1 cut(s)	665
Bst1107I	GTATAC	3 cut(s)	109, 457, 1131
Bst2UI	CCWGG	2 cut(s)	480, 1183
Bst4CI	ACNGT	4 cut(s)	466, 556, 934, 994
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstDEI	CTNAG	4 cut(s)	141, 146, 330, 917
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	64, 370
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	3 cut(s)	411, 716, 884
BstKTI	GATC	4 cut(s)	130, 602, 753, 1044
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	127, 599, 750, 1041
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 566
BstNI	CCWGG	2 cut(s)	480, 1183
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	478, 1181
BstSFI	CTRYAG	1 cut(s)	969
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	592, 955
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZ17I	GTATAC	3 cut(s)	109, 457, 1131
BsuRI	GGCC	4 cut(s)	102, 303, 680, 896
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	64, 370
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	561, 891, 939
CfoI	GCGC	3 cut(s)	411, 716, 884
Cfr13I	GGNCC	1 cut(s)	678
CsiI	ACCWGGT	1 cut(s)	1181
Csp6I	GTAC	2 cut(s)	904, 925
CviAII	CATG	5 cut(s)	198, 289, 384, 505, 666
CviQI	GTAC	2 cut(s)	904, 925
DdeI	CTNAG	4 cut(s)	141, 146, 330, 917
DpnI	GATC	4 cut(s)	129, 601, 752, 1043
DpnII	GATC	4 cut(s)	127, 599, 750, 1041
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	665
Eco31I	GGTCTC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	478, 1181
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	5 cut(s)	201, 292, 387, 508, 669
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	5 cut(s)	197, 288, 383, 504, 665
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	3 cut(s)	108, 456, 1130
Fnu4HI	GCNGC	2 cut(s)	606, 969
FokI	GGATG	2 cut(s)	51, 357
Fsp4HI	GCNGC	2 cut(s)	606, 969
FspBI	CTAG	3 cut(s)	213, 390, 999
FspI	TGCGCA	2 cut(s)	410, 883
GlaI	GCGC	3 cut(s)	410, 715, 883
GluI	GCNGC	2 cut(s)	606, 969
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	4 cut(s)	102, 303, 680, 896
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	3 cut(s)	411, 716, 884
Hin1II	CATG	5 cut(s)	201, 292, 387, 508, 669
Hin6I	GCGC	3 cut(s)	409, 714, 882
HinP1I	GCGC	3 cut(s)	409, 714, 882
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HinfI	GANTC	4 cut(s)	636, 889, 961, 1137
HpaI	GTTAAC	1 cut(s)	1021
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	4 cut(s)	100, 684, 833, 1171
Hpy166II	GTNNAC	7 cut(s)	62, 109, 286, 457, 1021, 1100, 1131
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	68, 550, 754
Hpy8I	GTNNAC	7 cut(s)	62, 109, 286, 457, 1021, 1100, 1131
HpyAV	CCTTC	1 cut(s)	950
HpyCH4III	ACNGT	4 cut(s)	466, 556, 934, 994
HpyCH4IV	ACGT	3 cut(s)	58, 206, 902
HpyCH4V	TGCA	9 cut(s)	179, 201, 286, 526, 569, 608, 866, 971, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 566
HpyF3I	CTNAG	4 cut(s)	141, 146, 330, 917
HpySE526I	ACGT	3 cut(s)	58, 206, 902
Hsp92II	CATG	5 cut(s)	201, 292, 387, 508, 669
HspAI	GCGC	3 cut(s)	409, 714, 882
Kpn2I	TCCGGA	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	1021
Kzo9I	GATC	4 cut(s)	127, 599, 750, 1041
LmnI	GCTCC	2 cut(s)	339, 766
Lsp1109I	GCAGC	2 cut(s)	592, 955
LweI	GCATC	1 cut(s)	569
MabI	ACCWGGT	1 cut(s)	1181
MaeI	CTAG	3 cut(s)	213, 390, 999
MaeII	ACGT	3 cut(s)	58, 206, 902
MaeIII	GTNAC	5 cut(s)	88, 193, 886, 1085, 1120
MalI	GATC	4 cut(s)	129, 601, 752, 1043
MbiI	CCGCTC	1 cut(s)	1168
MboI	GATC	4 cut(s)	127, 599, 750, 1041
MboII	GAAGA	2 cut(s)	83, 538
MfeI	CAATTG	2 cut(s)	780, 877
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	303
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	883, 970
MmeI	TCCRAC	2 cut(s)	155, 166
MnlI	CCTC	4 cut(s)	148, 150, 327, 806
Mox20I	TGGCCA	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	868
MroI	TCCGGA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	7 cut(s)	162, 396, 660, 767, 1020, 1061, 1068
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	480, 1183
MunI	CAATTG	2 cut(s)	780, 877
MvaI	CCWGG	2 cut(s)	480, 1183
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	482, 566
NcoI	CCATGG	1 cut(s)	665
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	4 cut(s)	127, 599, 750, 1041
NlaIII	CATG	5 cut(s)	201, 292, 387, 508, 669
NmuCI	GTSAC	4 cut(s)	88, 193, 886, 1120
NsbI	TGCGCA	2 cut(s)	410, 883
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	636, 1137
PflFI	GACNNNGTC	1 cut(s)	994
PkrI	GCNGC	2 cut(s)	607, 970
PleI	GAGTC	2 cut(s)	883, 969
PpsI	GAGTC	2 cut(s)	883, 969
PshBI	ATTAAT	1 cut(s)	1068
Psp1406I	AACGTT	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	478, 1181
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	478, 1181
PspPI	GGNCC	1 cut(s)	678
PsrI	GAACNNNNNNTAC	2 cut(s)	795, 827
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	994
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	2 cut(s)	905, 926
RsaNI	GTAC	2 cut(s)	904, 925
SaqAI	TTAA	7 cut(s)	162, 396, 660, 767, 1020, 1061, 1068
SatI	GCNGC	2 cut(s)	606, 969
Sau3AI	GATC	4 cut(s)	127, 599, 750, 1041
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	2 cut(s)	883, 970
ScrFI	CCNGG	2 cut(s)	480, 1183
SduI	GDGCHC	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	1181
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	969
SsiI	CCGC	1 cut(s)	1168
SspMI	CTAG	3 cut(s)	213, 390, 999
StyD4I	CCNGG	2 cut(s)	478, 1181
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	4 cut(s)	466, 556, 934, 994
TaiI	ACGT	3 cut(s)	61, 209, 905
TaqI	TCGA	2 cut(s)	1140, 1158
TfiI	GAWTC	2 cut(s)	636, 1137
Tru1I	TTAA	7 cut(s)	162, 396, 660, 767, 1020, 1061, 1068
Tru9I	TTAA	7 cut(s)	162, 396, 660, 767, 1020, 1061, 1068
TscAI	CASTG	3 cut(s)	561, 891, 939
TseFI	GTSAC	4 cut(s)	88, 193, 886, 1120
TseI	GCWGC	2 cut(s)	605, 968
Tsp45I	GTSAC	4 cut(s)	88, 193, 886, 1120
TspDTI	ATGAA	5 cut(s)	252, 359, 493, 744, 1131
TspRI	CASTG	3 cut(s)	561, 891, 939
Tth111I	GACNNNGTC	1 cut(s)	994
VneI	GTGCAC	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	1068
XapI	RAATTY	3 cut(s)	170, 491, 731
XceI	RCATGY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
XmiI	GTMKAC	3 cut(s)	108, 456, 1130
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	3 cut(s)	213, 390, 999
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.