RchiOBHm_Chr6g0298881
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008158
Physical Location & Seq
Forward (+)
60120673 .. 60121343
671 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26834

Sequence Viewer

Length: 372 bp
ATGGAACTTGTGGAACTGACCCCAATAAGAGATGCACTTGTTGGATTGCCTGGAGTGAATGGGCTCTCAACTGAGCAGCGCAAAAGACTAACAATCGCAGTAGAGCTTGTTGCCAACCCATCCATAATATTTATGGATGAGCCAACCTCTGGTCTTGATGCCAGGGCTGCAGCAATTGTAATGAGAACTGTGAGGAATACAGTGAACACCGGGAGAACTGTAGTCTGCACCATCCACCAGCCAAGCATTGATATATTTGATGCTTTTGATGAGATGCTACTTTTGAAATGGGGAGGAGAAGAAATATATGTTGGTCCTTTAGGCCACCAGTCCTCTCAGTTGATCGAATACTTTGAGGTAAGGCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

4.79

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 2 cut(s) 49, 161
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 76, 167, 170
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 88, 154, 182
BccI CCATC 2 cut(s) 127, 239
BciT130I CCWGG 2 cut(s) 51, 163
BcnI CCSGG 1 cut(s) 211
BfmI CTRYAG 2 cut(s) 168, 219
BisI GCNGC 3 cut(s) 77, 168, 171
BlsI GCNGC 3 cut(s) 78, 169, 172
Bme1390I CCNGG 3 cut(s) 51, 163, 211
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmrFI CCNGG 3 cut(s) 51, 163, 211
BmsI GCATC 4 cut(s) 22, 148, 250, 264
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 51, 163
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 119, 142, 231
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 63, 350
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 88, 154, 182
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 342
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 2 cut(s) 64, 349
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 51, 163
Bst4CI ACNGT 3 cut(s) 190, 202, 220
BstDEI CTNAG 2 cut(s) 72, 336
BstF5I GGATG 3 cut(s) 119, 142, 231
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 2 cut(s) 51, 163
BstSCI CCNGG 3 cut(s) 49, 161, 209
BstSFI CTRYAG 2 cut(s) 168, 219
BstV1I GCAGC 3 cut(s) 88, 154, 182
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 3 cut(s) 119, 142, 231
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 314
CviJI RGCY 7 cut(s) 64, 106, 142, 167, 241, 324, 364
CviKI_1 RGCY 7 cut(s) 64, 106, 142, 167, 241, 324, 364
DdeI CTNAG 2 cut(s) 72, 336
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 49, 161
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 7 cut(s) 125, 134, 254, 307, 309, 368, 370
Fnu4HI GCNGC 3 cut(s) 77, 168, 171
FokI GGATG 3 cut(s) 106, 149, 218
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 77, 168, 171
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 77, 168, 171
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 81
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 190, 202, 220
HpyCH4V TGCA 3 cut(s) 35, 170, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 72, 336
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 8 cut(s) 36, 63, 135, 148, 175, 223, 251, 341
Lsp1109I GCAGC 3 cut(s) 88, 154, 182
LweI GCATC 4 cut(s) 22, 148, 250, 264
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 311
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 5 cut(s) 157, 186, 287, 343, 349
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 3 cut(s) 51, 163, 211
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 2 cut(s) 51, 163
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 211
NdeII GATC 1 cut(s) 342
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 3 cut(s) 78, 169, 172
Psp6I CCWGG 2 cut(s) 49, 161
PspGI CCWGG 2 cut(s) 49, 161
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 172
SatI GCNGC 3 cut(s) 77, 168, 171
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 51, 163, 211
SduI GDGCHC 1 cut(s) 66
SetI ASST 3 cut(s) 108, 149, 360
SfaNI GCATC 4 cut(s) 22, 148, 250, 264
SfcI CTRYAG 2 cut(s) 168, 219
SinI GGWCC 1 cut(s) 314
Sse9I AATT 1 cut(s) 174
SspI AATATT 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 49, 161, 209
TaaI ACNGT 3 cut(s) 190, 202, 220
TaqI TCGA 1 cut(s) 345
TasI AATT 1 cut(s) 174
TscAI CASTG 1 cut(s) 207
TseI GCWGC 3 cut(s) 76, 167, 170
TspRI CASTG 1 cut(s) 207
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.