Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

42766470 .. 42769311

Gene Structure 2842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG256100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAACAAGATGATAAATGGCGATCTCATGATTTGTAGGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCAGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTGAGTTCACTTATTTGTGCTCTGGCTGCATTTGGATTAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACATACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTGGTTTGTTAGCTTATGCATTGCTTTTCAATTGCAGAGTGACTCTGGCCTTGACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTAGAGTTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATTAAGATATCTGGTTACCTGAGAGAGCAACATACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTTCTTCTGCTCTTCGCTTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTTGAAGAAGTAATGGAACTAGTAGAGCTTGATACTCTAAGGCATGCTTTGGTTGGTGTGCCAGGCAGTTCAGGCTTATCAACAGAGCAAAGAAAACGCTTAACAATCGCTGTTGAGCTTGTTGCGAACCCGTCAATTATCTTTATGGATGAACCCACATCTGGACTGGACGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACTGTTGATACAGGAAGAACGGTGGTCTGCACTATACACCAACCAAGTATCGACATTTTTGAGGCATTTGACGAGGTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

463

Amino Acids

51.04

Weight (kDa)

8.7

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	13 - 68	3.1e-18	La domain
ABC2_membrane	PF01061	81 - 129	3.5e-12	ABC-2 type transporter
PDR_assoc	PF08370	134 - 196	2.4e-22	Plant PDR ABC transporter associated
ABC_tran	PF00005	268 - 420	3.2e-21	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	891
AccBSI	CCGCTC	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	778
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	199, 816
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	888
AfaI	GTAC	3 cut(s)	557, 578, 1386
AfiI	CCNNNNNNNGG	3 cut(s)	685, 686, 1259
AgsI	TTSAA	3 cut(s)	148, 529, 1103
AhlI	ACTAGT	1 cut(s)	1117
AjnI	CCWGG	2 cut(s)	829, 1159
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	1076
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	3 cut(s)	159, 330, 546
ApeKI	GCWGC	5 cut(s)	242, 257, 620, 1277, 1280
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	160, 330
AsuHPI	GGTGA	3 cut(s)	336, 485, 819
BauI	CACGAG	1 cut(s)	1091
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	5 cut(s)	229, 244, 607, 1289, 1292
BccI	CCATC	2 cut(s)	620, 877
BciT130I	CCWGG	2 cut(s)	831, 1161
BciVI	GTATCC	1 cut(s)	908
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	1076
BcuI	ACTAGT	1 cut(s)	1117
BfaI	CTAG	5 cut(s)	651, 666, 858, 972, 1118
BfmI	CTRYAG	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	908
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	5 cut(s)	243, 258, 621, 1278, 1281
BlsI	GCNGC	5 cut(s)	244, 259, 622, 1279, 1282
Bme1390I	CCNGG	2 cut(s)	831, 1161
BmgT120I	GGNCC	2 cut(s)	160, 330
BmrFI	CCNGG	2 cut(s)	831, 1161
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	999
BsaHI	GRCGYC	1 cut(s)	888
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	685, 686, 1259
Bse1I	ACTGG	3 cut(s)	680, 913, 1269
Bse3DI	GCAATG	2 cut(s)	332, 518
BseBI	CCWGG	2 cut(s)	831, 1161
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	1252
BseLI	CCNNNNNNNGG	3 cut(s)	685, 686, 1259
BseMI	GCAATG	2 cut(s)	332, 518
BseMII	CTCAG	1 cut(s)	941
BseNI	ACTGG	3 cut(s)	680, 913, 1269
BseRI	GAGGAG	3 cut(s)	196, 1002, 1043
BseXI	GCAGC	5 cut(s)	229, 244, 607, 1289, 1292
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	1321
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	161, 332, 548
BsiHKAI	GWGCWC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	685, 686, 1259
BsmAI	GTCTC	1 cut(s)	1076
BsnI	GGCC	3 cut(s)	161, 332, 548
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	22, 58, 79, 402, 693
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	2 cut(s)	199, 816
BspANI	GGCC	3 cut(s)	161, 332, 548
BspCNI	CTCAG	1 cut(s)	942
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	1059
BsrBI	CCGCTC	1 cut(s)	816
BsrDI	GCAATG	2 cut(s)	332, 518
BsrI	ACTGG	3 cut(s)	680, 913, 1269
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	5 cut(s)	22, 58, 79, 402, 693
BssNAI	GTATAC	1 cut(s)	779
BssNI	GRCGYC	1 cut(s)	888
BssSI	CACGAG	1 cut(s)	1091
BssT1I	CCWWGG	1 cut(s)	317
Bst1107I	GTATAC	1 cut(s)	779
Bst2BI	CACGAG	1 cut(s)	1091
Bst2UI	CCWGG	2 cut(s)	831, 1161
Bst4CI	ACNGT	7 cut(s)	193, 586, 646, 1024, 1300, 1312, 1330
Bst6I	CTCTTC	1 cut(s)	1059
BstACI	GRCGYC	1 cut(s)	888
BstC8I	GCNNGC	2 cut(s)	186, 1143
BstDEI	CTNAG	4 cut(s)	67, 569, 950, 1136
BstDSI	CCRYGG	1 cut(s)	317
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	1 cut(s)	1252
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	5 cut(s)	25, 61, 82, 405, 696
BstMAI	GTCTC	1 cut(s)	1076
BstMBI	GATC	5 cut(s)	22, 58, 79, 402, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 322, 977, 1170, 1277
BstNI	CCWGG	2 cut(s)	831, 1161
BstNSI	RCATGY	1 cut(s)	1145
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	829, 1159
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	229, 244, 607, 1289, 1292
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstZ17I	GTATAC	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	908
BsuRI	GGCC	3 cut(s)	161, 332, 548
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	1252
BtsIMutI	CAGTG	2 cut(s)	61, 591
Cac8I	GCNNGC	2 cut(s)	186, 1143
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	160, 330
CseI	GACGC	1 cut(s)	1277
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	3 cut(s)	556, 577, 1385
CviAII	CATG	3 cut(s)	28, 318, 1142
CviQI	GTAC	3 cut(s)	556, 577, 1385
DdeI	CTNAG	4 cut(s)	67, 569, 950, 1136
DpnI	GATC	5 cut(s)	24, 60, 81, 404, 695
DpnII	GATC	5 cut(s)	22, 58, 79, 402, 693
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
Eco130I	CCWWGG	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	939
Eco91I	GGTNACC	1 cut(s)	944
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	829, 1159
EcoRV	GATATC	1 cut(s)	939
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	31, 321, 1145
FalI	AAGNNNNNCTT	2 cut(s)	1129, 1161
FatI	CATG	3 cut(s)	27, 317, 1141
FauNDI	CATATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	5 cut(s)	243, 258, 621, 1278, 1281
FokI	GGATG	1 cut(s)	1259
Fsp4HI	GCNGC	5 cut(s)	243, 258, 621, 1278, 1281
FspBI	CTAG	5 cut(s)	651, 666, 858, 972, 1118
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	5 cut(s)	243, 258, 621, 1278, 1281
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	161, 332, 548
HgaI	GACGC	1 cut(s)	1277
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	3 cut(s)	31, 321, 1145
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	6 cut(s)	288, 541, 613, 785, 1033, 1089
HpaI	GTTAAC	1 cut(s)	673
HphI	GGTGA	3 cut(s)	336, 485, 819
Hpy166II	GTNNAC	4 cut(s)	224, 673, 748, 779
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	4 cut(s)	28, 148, 406, 1260
Hpy8I	GTNNAC	4 cut(s)	224, 673, 748, 779
HpyAV	CCTTC	3 cut(s)	107, 602, 917
HpyCH4III	ACNGT	7 cut(s)	193, 586, 646, 1024, 1300, 1312, 1330
HpyCH4IV	ACGT	3 cut(s)	554, 888, 1387
HpyCH4V	TGCA	9 cut(s)	140, 188, 245, 260, 518, 534, 623, 796, 1338
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 322, 977, 1170, 1277
HpyF3I	CTNAG	4 cut(s)	67, 569, 950, 1136
HpySE526I	ACGT	3 cut(s)	554, 888, 1387
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	3 cut(s)	31, 321, 1145
HspAI	GCGC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	22, 58, 79, 402, 693
LguI	GCTCTTC	1 cut(s)	1059
LmnI	GCTCC	2 cut(s)	418, 863
Lsp1109I	GCAGC	5 cut(s)	229, 244, 607, 1289, 1292
LweI	GCATC	1 cut(s)	149
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	5 cut(s)	651, 666, 858, 972, 1118
MaeII	ACGT	3 cut(s)	554, 888, 1387
MaeIII	GTNAC	5 cut(s)	538, 733, 768, 944, 1018
MalI	GATC	5 cut(s)	24, 60, 81, 404, 695
MbiI	CCGCTC	1 cut(s)	816
MboI	GATC	5 cut(s)	22, 58, 79, 402, 693
MboII	GAAGA	5 cut(s)	163, 1038, 1046, 1115, 1335
MfeI	CAATTG	2 cut(s)	432, 529
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	5 cut(s)	383, 432, 529, 659, 1233
MlyI	GAGTC	4 cut(s)	535, 622, 1042, 1083
MnlI	CCTC	9 cut(s)	84, 173, 217, 458, 1021, 1023, 1287, 1363, 1375
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	7 cut(s)	156, 312, 419, 672, 713, 933, 1199
MslI	CAYNNNNRTG	2 cut(s)	881, 1289
MspR9I	CCNGG	2 cut(s)	831, 1161
MunI	CAATTG	2 cut(s)	432, 529
MvaI	CCWGG	2 cut(s)	831, 1161
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	5 cut(s)	242, 322, 977, 1170, 1277
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	5 cut(s)	22, 58, 79, 402, 693
NlaIII	CATG	3 cut(s)	31, 321, 1145
NmuCI	GTSAC	2 cut(s)	538, 768
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	1145
PaeI	GCATGC	1 cut(s)	1145
PagI	TCATGA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	1059
PfeI	GAWTC	2 cut(s)	288, 785
PflFI	GACNNNGTC	1 cut(s)	646
PkrI	GCNGC	5 cut(s)	244, 259, 622, 1279, 1282
PleI	GAGTC	4 cut(s)	535, 621, 1041, 1083
PpsI	GAGTC	4 cut(s)	535, 621, 1041, 1083
Psp6I	CCWGG	2 cut(s)	829, 1159
PspEI	GGTNACC	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	2 cut(s)	829, 1159
PspPI	GGNCC	2 cut(s)	160, 330
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PstI	CTGCAG	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	646
RsaI	GTAC	3 cut(s)	557, 578, 1386
RsaNI	GTAC	3 cut(s)	556, 577, 1385
RseI	CAYNNNNRTG	2 cut(s)	881, 1289
SapI	GCTCTTC	1 cut(s)	1059
SaqAI	TTAA	7 cut(s)	156, 312, 419, 672, 713, 933, 1199
SatI	GCNGC	5 cut(s)	243, 258, 621, 1278, 1281
Sau3AI	GATC	5 cut(s)	22, 58, 79, 402, 693
Sau96I	GGNCC	2 cut(s)	160, 330
SchI	GAGTC	4 cut(s)	535, 622, 1042, 1083
ScrFI	CCNGG	2 cut(s)	831, 1161
SduI	GDGCHC	1 cut(s)	238
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	2 cut(s)	881, 1289
SmlI	CTYRAG	1 cut(s)	1014
SmoI	CTYRAG	1 cut(s)	1014
SpeI	ACTAGT	1 cut(s)	1117
SphI	GCATGC	1 cut(s)	1145
Sse9I	AATT	5 cut(s)	383, 432, 529, 659, 1233
SsiI	CCGC	2 cut(s)	199, 816
SspMI	CTAG	5 cut(s)	651, 666, 858, 972, 1118
StyD4I	CCNGG	2 cut(s)	829, 1159
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	7 cut(s)	193, 586, 646, 1024, 1300, 1312, 1330
TaiI	ACGT	3 cut(s)	557, 891, 1390
TaqI	TCGA	3 cut(s)	788, 806, 1359
TasI	AATT	5 cut(s)	383, 432, 529, 659, 1233
TfiI	GAWTC	2 cut(s)	288, 785
Tru1I	TTAA	7 cut(s)	156, 312, 419, 672, 713, 933, 1199
Tru9I	TTAA	7 cut(s)	156, 312, 419, 672, 713, 933, 1199
TscAI	CASTG	2 cut(s)	61, 591
TseFI	GTSAC	2 cut(s)	538, 768
TseI	GCWGC	5 cut(s)	242, 257, 620, 1277, 1280
Tsp45I	GTSAC	2 cut(s)	538, 768
TspDTI	ATGAA	5 cut(s)	17, 85, 396, 779, 1263
TspRI	CASTG	2 cut(s)	61, 591
Tth111I	GACNNNGTC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	324, 1261
XmiI	GTMKAC	1 cut(s)	778
XspI	CTAG	5 cut(s)	651, 666, 858, 972, 1118
ZraI	GACGTC	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.