pycom13g12320
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008158
Physical Location & Seq
Reverse (-)
8527338 .. 8528337
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12320.2

Sequence Viewer

Length: 735 bp
ATGGTCCTGCCATTCGAGCCACTGACAATCTCGTTTAAGGACGTGCAGTATTATGTTGATACACCTCCGGAAATGAGACAGCATGCTTTCAAGGAGAAAAAGCTTCAGTTGCTTAAAGATATAACAGGAGCATTCAGGCCAGGAATTCTTACTGCACTGATGGGAGTCACTGGGGCTGGAAAAACAACTCTCATGGATGTTCTTTCTGGAAGGAAAACAGGAGGTAGTATCGTGGGAGGTATAAGAATCGGAGGGTACCCCAAGGTCCAGAAGACATTTGCAAGAATATCAGGATACTGCGAGCAGACTGATATACATTCTCCACAGATCACAGTAGAAGAATCACTTATGATCTCAGCTTGGTTGCGGGTGCCACACGAAACTGATCCAGACATAAAAGCTAAATTTGTGGAGGAAGTCATTCAAACGATTGAACTGGAGGATATAAGAGATTCCTTGGTTGGCATTCCTGGACAAACTGGCCTATCTACCGAACAGCGCAAAGGGCTAACAGTTGCAGTGGAGCTTGTATCCAACCCATCAATAATATTTATGGATGAACCCACGTCAGGCTTAGACGCCAGAGCAGCTGCAATTGTCATGCGCGTAGTAAAGAATGTTGTTTCCACAGGAAGGACAACTGTTTGCACAATCCACCAGCCAAGCATTGATATTTTTGAGTCATTTGACGAGTTAATTTTGATGAAAAGGGGAGGCCAAATCATCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

245

Amino Acids

26.72

Weight (kDa)

5.86

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 255, 370
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 144, 404
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 569, 633
AgsI TTSAA 3 cut(s) 91, 425, 434
AjiI CACGTC 2 cut(s) 43, 567
AjnI CCWGG 2 cut(s) 139, 469
AluBI AGCT 5 cut(s) 103, 359, 401, 526, 590
AluI AGCT 5 cut(s) 103, 359, 401, 526, 590
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 3 cut(s) 137, 481, 715
ApeKI GCWGC 2 cut(s) 587, 590
ApoI RAATTY 2 cut(s) 144, 404
Asp700I GAANNNNTTC 1 cut(s) 420
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 501, 606
AspS9I GGNCC 2 cut(s) 4, 265
AvaII GGWCC 2 cut(s) 4, 265
BanI GGYRCC 2 cut(s) 255, 370
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 577, 599
BccI CCATC 2 cut(s) 154, 547
BciT130I CCWGG 2 cut(s) 141, 471
BciVI GTATCC 2 cut(s) 287, 541
BcoDI GTCTC 1 cut(s) 70
BfuI GTATCC 2 cut(s) 287, 541
BisI GCNGC 2 cut(s) 588, 591
BlsI GCNGC 2 cut(s) 589, 592
Bme1390I CCNGG 2 cut(s) 141, 471
Bme18I GGWCC 2 cut(s) 4, 265
BmgBI CACGTC 2 cut(s) 43, 567
BmgT120I GGNCC 2 cut(s) 4, 265
BmiI GGNNCC 2 cut(s) 257, 372
BmrFI CCNGG 2 cut(s) 141, 471
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 261, 456
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 633
Bse1I ACTGG 3 cut(s) 175, 441, 484
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 2 cut(s) 141, 471
BseDI CCNNGG 2 cut(s) 261, 456
BseGI GGATG 2 cut(s) 202, 562
BseLI CCNNNNNNNGG 2 cut(s) 569, 633
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 175, 441, 484
BseXI GCAGC 2 cut(s) 577, 599
BsgI GTGCAG 2 cut(s) 65, 138
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 3 cut(s) 139, 483, 717
BshNI GGYRCC 2 cut(s) 255, 370
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 569, 633
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 2 cut(s) 131, 465
BsnI GGCC 3 cut(s) 139, 483, 717
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 3 cut(s) 327, 351, 385
BspACI CCGC 1 cut(s) 367
BspANI GGCC 3 cut(s) 139, 483, 717
BspCNI CTCAG 1 cut(s) 368
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 257, 372
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 2 cut(s) 255, 370
BsrI ACTGG 3 cut(s) 175, 441, 484
BssECI CCNNGG 2 cut(s) 261, 456
BssMI GATC 3 cut(s) 327, 351, 385
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 261, 456
Bst2UI CCWGG 2 cut(s) 141, 471
Bst4CI ACNGT 3 cut(s) 334, 514, 643
BstACI GRCGYC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 84, 302
BstDEI CTNAG 2 cut(s) 355, 574
BstF5I GGATG 2 cut(s) 202, 562
BstFNI CGCG 1 cut(s) 606
BstHHI GCGC 2 cut(s) 501, 606
BstKTI GATC 3 cut(s) 330, 354, 388
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 327, 351, 385
BstMWI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
BstNI CCWGG 2 cut(s) 141, 471
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 139, 469
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 577, 599
BstV2I GAAGAC 1 cut(s) 278
BsuI GTATCC 2 cut(s) 287, 541
BsuRI GGCC 3 cut(s) 139, 483, 717
BtrI CACGTC 2 cut(s) 43, 567
BtsCI GGATG 2 cut(s) 202, 562
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 20, 155, 168, 525
Cac8I GCNNGC 2 cut(s) 84, 302
CfoI GCGC 2 cut(s) 501, 606
Cfr13I GGNCC 2 cut(s) 4, 265
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 256
CviAII CATG 3 cut(s) 83, 193, 601
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 355, 574
DpnI GATC 3 cut(s) 329, 353, 387
DpnII GATC 3 cut(s) 327, 351, 385
Eco130I CCWWGG 2 cut(s) 261, 456
Eco47I GGWCC 2 cut(s) 4, 265
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 139, 469
EcoT14I CCWWGG 2 cut(s) 261, 456
ErhI CCWWGG 2 cut(s) 261, 456
FaeI CATG 3 cut(s) 86, 196, 604
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 3 cut(s) 82, 192, 600
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 588, 591
FokI GGATG 2 cut(s) 209, 569
Fsp4HI GCNGC 2 cut(s) 588, 591
GlaI GCGC 2 cut(s) 500, 605
GluI GCNGC 2 cut(s) 588, 591
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 3 cut(s) 139, 483, 717
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 587
HhaI GCGC 2 cut(s) 501, 606
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 3 cut(s) 86, 196, 604
Hin6I GCGC 2 cut(s) 499, 604
HinP1I GCGC 2 cut(s) 499, 604
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 5 cut(s) 165, 246, 341, 452, 680
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 6 cut(s) 68, 207, 268, 291, 389, 732
HpyAV CCTTC 2 cut(s) 204, 627
HpyCH4III ACNGT 3 cut(s) 334, 514, 643
HpyCH4IV ACGT 2 cut(s) 42, 566
HpyCH4V TGCA 6 cut(s) 46, 155, 281, 518, 593, 648
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
HpyF3I CTNAG 2 cut(s) 355, 574
HpySE526I ACGT 2 cut(s) 42, 566
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 3 cut(s) 86, 196, 604
HspAI GCGC 2 cut(s) 499, 604
Kpn2I TCCGGA 1 cut(s) 67
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 327, 351, 385
LmnI GCTCC 2 cut(s) 128, 523
Lsp1109I GCAGC 2 cut(s) 577, 599
MaeII ACGT 2 cut(s) 42, 566
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 329, 353, 387
MboI GATC 3 cut(s) 327, 351, 385
MboII GAAGA 3 cut(s) 283, 350, 720
MfeI CAATTG 1 cut(s) 594
MluCI AATT 4 cut(s) 144, 404, 594, 696
MlyI GAGTC 2 cut(s) 174, 689
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 7 cut(s) 75, 215, 230, 245, 406, 433, 707
MroI TCCGGA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 36, 114, 695
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 141, 471
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 131, 465
MvaI CCWGG 2 cut(s) 141, 471
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
NdeII GATC 3 cut(s) 327, 351, 385
NlaIII CATG 3 cut(s) 86, 196, 604
NlaIV GGNNCC 2 cut(s) 257, 372
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PctI GAATGC 2 cut(s) 131, 465
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 246, 341, 452
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 589, 592
PleI GAGTC 2 cut(s) 173, 688
PpsI GAGTC 2 cut(s) 173, 688
Psp6I CCWGG 2 cut(s) 139, 469
PspGI CCWGG 2 cut(s) 139, 469
PspN4I GGNNCC 2 cut(s) 257, 372
PspPI GGNCC 2 cut(s) 4, 265
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 36, 114, 695
SatI GCNGC 2 cut(s) 588, 591
Sau3AI GATC 3 cut(s) 327, 351, 385
Sau96I GGNCC 2 cut(s) 4, 265
SchI GAGTC 2 cut(s) 174, 689
ScrFI CCNGG 2 cut(s) 141, 471
SinI GGWCC 2 cut(s) 4, 265
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 144, 404, 594, 696
SsiI CCGC 1 cut(s) 367
SspI AATATT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 139, 469
StyI CCWWGG 2 cut(s) 261, 456
TaaI ACNGT 3 cut(s) 334, 514, 643
TaiI ACGT 2 cut(s) 45, 569
TaqI TCGA 1 cut(s) 15
TasI AATT 4 cut(s) 144, 404, 594, 696
TfiI GAWTC 3 cut(s) 246, 341, 452
Tru1I TTAA 3 cut(s) 36, 114, 695
Tru9I TTAA 3 cut(s) 36, 114, 695
TscAI CASTG 4 cut(s) 27, 162, 175, 525
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 587, 590
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 573, 719
TspRI CASTG 4 cut(s) 27, 162, 175, 525
VpaK11BI GGWCC 2 cut(s) 4, 265
XapI RAATTY 2 cut(s) 144, 404
XceI RCATGY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.