Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000659.1

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

183803 .. 189641

Gene Structure 5839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000659.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgccaccgccgagtcgccgttcaatggatttgctctccgccgggtcgccgggcacctctcaccaccaccacgttttctgctcttgtcatcgagatgctgtggatcgattgagctccaaattaaagaacattgaagtgattgatcaccgctctcagagattcgggccaccggaatctggggatcaagcagaggtagcgaattggggaaaagaggagagactgcaagattggatacccaaggttgcatttgttggatttgtgacatgcacaacgtttcctagatggcaattacaccccacagaaaaaataaatggcaacctttatctttcttgcttgatctttgggttagtgcacatgatgttcaatgggcattccgagctacctcttatgatatctcagctcccagtcttttacaagcaaagggataattactttcatcctgcgtgggcatggtctagtgttaatttgcttctgtgcataccttactctattattgaagctgtgagtattgaagctgttgtatggtcttgtgtcgtatactacacagttggttttgcccctggtgctgggaaatttttctgtttcatgtttttgctattttctgtgcaccaaatggctttgggtctcttccggacagtggcatctcttgcaagagatatggtcattgccaatacatttggatcagttgcattacttgttatatttttgttgggtggactcattattcccaaagatagcattaagccatggtggaaatgggccttttgggtatcaccactatcatatggacaacgcgctctttctgtcaatgaatttacttctgtaaggtggatcaagatagctcctttaacaaacagaacaattgggcaaaatgtcctccaagaacacaacataccaaatggtgattactggtattggattggagttggtggtttgttagcttatgcattgcttttcaattgcacagtgactctggccttgacgtacctaaatcgtaagtttgaaagaaatttgtataatgttgttcatcacatgttcttcacagcactaaggaagtaccagacagtgcttccacttgatgacacagaagggagtcctgctgcagatgcttacttgcttgcttgtcagcatgccatcctcacccctcactatgcgctgcccctggcagaccctcgcacaggccatgcattgcctactctcaatgcatgggcttgctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

406

Amino Acids

45.97

Weight (kDa)

8.47

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	795
AccIII	TCCGGA	1 cut(s)	630
AciI	CCGC	3 cut(s)	8, 39, 148
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	4 cut(s)	111, 189, 688, 839
AcsI	RAATTY	3 cut(s)	572, 812, 1009
AfaI	GTAC	2 cut(s)	986, 1058
AfiI	CCNNNNNNNGG	5 cut(s)	25, 176, 566, 637, 1178
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	7 cut(s)	24, 134, 364, 497, 512, 958, 1004
AjnI	CCWGG	2 cut(s)	559, 1161
AluBI	AGCT	7 cut(s)	114, 379, 400, 500, 515, 842, 941
AluI	AGCT	7 cut(s)	114, 379, 400, 500, 515, 842, 941
Alw21I	GWGCWC	3 cut(s)	116, 354, 609
Alw26I	GTCTC	2 cut(s)	211, 629
Alw44I	GTGCAC	2 cut(s)	350, 605
AlwI	GGATC	4 cut(s)	111, 189, 688, 839
Aor13HI	TCCGGA	1 cut(s)	630
AoxI	GGCC	4 cut(s)	164, 759, 975, 1180
ApaLI	GTGCAC	2 cut(s)	350, 605
ApeKI	GCWGC	2 cut(s)	1100, 1156
ApoI	RAATTY	3 cut(s)	572, 812, 1009
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	2 cut(s)	797, 1156
AspS9I	GGNCC	2 cut(s)	164, 759
AsuC2I	CCSGG	2 cut(s)	43, 51
AsuHPI	GGTGA	5 cut(s)	53, 137, 765, 914, 1132
BaeGI	GKGCMC	3 cut(s)	56, 354, 609
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	3 cut(s)	116, 354, 609
BbvI	GCAGC	2 cut(s)	1087, 1143
BccI	CCATC	2 cut(s)	276, 1142
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	561, 1163
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	43, 51
BcoDI	GTCTC	2 cut(s)	211, 629
BfaI	CTAG	2 cut(s)	279, 456
BfmI	CTRYAG	1 cut(s)	1101
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	1101, 1157
BlsI	GCNGC	2 cut(s)	1102, 1158
Bme1390I	CCNGG	4 cut(s)	43, 51, 561, 1163
BmgT120I	GGNCC	2 cut(s)	164, 759
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	4 cut(s)	43, 51, 561, 1163
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	85, 650, 1096
BmuI	ACTGGG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	43, 51
Bsa29I	ATCGAT	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	4 cut(s)	237, 559, 746, 1161
BsaWI	WCCGGW	2 cut(s)	169, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 176, 566, 637, 1178
Bse1I	ACTGG	2 cut(s)	404, 914
Bse3DI	GCAATG	3 cut(s)	663, 947, 1187
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	561, 1163
BseCI	ATCGAT	1 cut(s)	106
BseDI	CCNNGG	4 cut(s)	237, 559, 746, 1161
BseGI	GGATG	2 cut(s)	436, 1134
BseLI	CCNNNNNNNGG	5 cut(s)	25, 176, 566, 637, 1178
BseMI	GCAATG	3 cut(s)	663, 947, 1187
BseMII	CTCAG	2 cut(s)	167, 410
BseNI	ACTGG	2 cut(s)	404, 914
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	3 cut(s)	56, 354, 609
BseXI	GCAGC	2 cut(s)	1087, 1143
BseYI	CCCAGC	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	166, 761, 977, 1182
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	116, 354, 609
BsiSI	CCGG	4 cut(s)	42, 50, 170, 631
BslI	CCNNNNNNNGG	5 cut(s)	25, 176, 566, 637, 1178
BsmAI	GTCTC	2 cut(s)	211, 629
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	166, 761, 977, 1182
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	4 cut(s)	56, 116, 354, 609
Bsp13I	TCCGGA	1 cut(s)	630
Bsp143I	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	3 cut(s)	8, 39, 148
BspANI	GGCC	4 cut(s)	166, 761, 977, 1182
BspCNI	CTCAG	2 cut(s)	166, 409
BspDI	ATCGAT	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	4 cut(s)	111, 189, 688, 839
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	629
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	3 cut(s)	663, 947, 1187
BsrI	ACTGG	2 cut(s)	404, 914
BssECI	CCNNGG	4 cut(s)	237, 559, 746, 1161
BssMI	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
BssNAI	GTATAC	1 cut(s)	538
BssT1I	CCWWGG	2 cut(s)	237, 746
Bst1107I	GTATAC	1 cut(s)	538
Bst2UI	CCWGG	2 cut(s)	561, 1163
Bst4CI	ACNGT	4 cut(s)	547, 637, 967, 1066
Bst6I	CTCTTC	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	1119, 1131, 1213
BstDEI	CTNAG	3 cut(s)	153, 396, 1049
BstDSI	CCRYGG	1 cut(s)	746
BstENI	CCTNNNNNAGG	1 cut(s)	1176
BstF5I	GGATG	2 cut(s)	436, 1134
BstFNI	CGCG	1 cut(s)	795
BstHHI	GCGC	2 cut(s)	797, 1156
BstKTI	GATC	6 cut(s)	106, 145, 184, 339, 683, 834
BstMAI	GTCTC	2 cut(s)	211, 629
BstMBI	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 376, 563, 647, 1106
BstNI	CCWGG	2 cut(s)	561, 1163
BstNSI	RCATGY	3 cut(s)	267, 1036, 1133
BstSCI	CCNGG	4 cut(s)	41, 49, 559, 1161
BstSFI	CTRYAG	1 cut(s)	1101
BstSLI	GKGCMC	3 cut(s)	56, 354, 609
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	1087, 1143
BstZ17I	GTATAC	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	166, 761, 977, 1182
BsuTUI	ATCGAT	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	436, 1134
BtsIMutI	CAGTG	3 cut(s)	642, 972, 1071
Cac8I	GCNNGC	3 cut(s)	1119, 1131, 1213
CfoI	GCGC	2 cut(s)	797, 1156
Cfr13I	GGNCC	2 cut(s)	164, 759
ClaI	ATCGAT	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	985, 1057
CviAII	CATG	9 cut(s)	264, 355, 450, 586, 747, 1033, 1130, 1184, 1206
CviQI	GTAC	2 cut(s)	985, 1057
DdeI	CTNAG	3 cut(s)	153, 396, 1049
DpnI	GATC	6 cut(s)	105, 144, 183, 338, 682, 833
DpnII	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	237, 746
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	1176
EcoRII	CCWGG	2 cut(s)	559, 1161
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	237, 746
EcoT22I	ATGCAT	3 cut(s)	949, 1189, 1207
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	237, 746
FaeI	CATG	9 cut(s)	267, 358, 453, 589, 750, 1036, 1133, 1187, 1209
FatI	CATG	9 cut(s)	263, 354, 449, 585, 746, 1032, 1129, 1183, 1205
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	1101, 1157
FokI	GGATG	2 cut(s)	423, 1121
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	1101, 1157
FspBI	CTAG	2 cut(s)	279, 456
GlaI	GCGC	2 cut(s)	796, 1155
GluI	GCNGC	2 cut(s)	1101, 1157
GsaI	CCCAGC	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	166, 761, 977, 1182
HapII	CCGG	4 cut(s)	42, 50, 170, 631
HhaI	GCGC	2 cut(s)	797, 1156
Hin1II	CATG	9 cut(s)	267, 358, 453, 589, 750, 1036, 1133, 1187, 1209
Hin6I	GCGC	2 cut(s)	795, 1154
HinP1I	GCGC	2 cut(s)	795, 1154
HinfI	GANTC	6 cut(s)	13, 159, 173, 717, 970, 1093
HpaII	CCGG	4 cut(s)	42, 50, 170, 631
HphI	GGTGA	5 cut(s)	53, 137, 765, 914, 1132
Hpy166II	GTNNAC	4 cut(s)	352, 538, 607, 716
Hpy188I	TCNGA	2 cut(s)	156, 376
Hpy188III	TCNNGA	3 cut(s)	92, 631, 835
Hpy8I	GTNNAC	4 cut(s)	352, 538, 607, 716
HpyAV	CCTTC	1 cut(s)	1082
HpyCH4III	ACNGT	4 cut(s)	547, 637, 967, 1066
HpyCH4IV	ACGT	3 cut(s)	72, 272, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 376, 563, 647, 1106
HpyF3I	CTNAG	3 cut(s)	153, 396, 1049
HpySE526I	ACGT	3 cut(s)	72, 272, 983
Hsp92II	CATG	9 cut(s)	267, 358, 453, 589, 750, 1036, 1133, 1187, 1209
HspAI	GCGC	2 cut(s)	795, 1154
Kpn2I	TCCGGA	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
LmnI	GCTCC	3 cut(s)	119, 405, 847
Lsp1109I	GCAGC	2 cut(s)	1087, 1143
LweI	GCATC	3 cut(s)	85, 650, 1096
MaeI	CTAG	2 cut(s)	279, 456
MaeII	ACGT	3 cut(s)	72, 272, 983
MaeIII	GTNAC	2 cut(s)	259, 967
MalI	GATC	6 cut(s)	105, 144, 183, 338, 682, 833
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
MboII	GAAGA	2 cut(s)	619, 1030
MfeI	CAATTG	2 cut(s)	861, 958
MhlI	GDGCHC	4 cut(s)	56, 116, 354, 609
MlyI	GAGTC	4 cut(s)	22, 711, 964, 1102
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	8 cut(s)	67, 184, 205, 393, 887, 1148, 1155, 1182
Mph1103I	ATGCAT	3 cut(s)	949, 1189, 1207
MroI	TCCGGA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	4 cut(s)	122, 462, 741, 848
MslI	CAYNNNNRTG	2 cut(s)	93, 134
MspI	CCGG	4 cut(s)	42, 50, 170, 631
MspR9I	CCNGG	4 cut(s)	43, 51, 561, 1163
MunI	CAATTG	2 cut(s)	861, 958
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	561, 1163
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	5 cut(s)	194, 376, 563, 647, 1106
NciI	CCSGG	2 cut(s)	43, 51
NcoI	CCATGG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
NlaIII	CATG	9 cut(s)	267, 358, 453, 589, 750, 1036, 1133, 1187, 1209
NlaIV	GGNNCC	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	259, 967
NsiI	ATGCAT	3 cut(s)	949, 1189, 1207
NspI	RCATGY	3 cut(s)	267, 1036, 1133
PaeI	GCATGC	1 cut(s)	1133
PciI	ACATGT	1 cut(s)	1032
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	159, 173
PkrI	GCNGC	2 cut(s)	1102, 1158
PleI	GAGTC	4 cut(s)	21, 711, 964, 1101
PpsI	GAGTC	4 cut(s)	21, 711, 964, 1101
PscI	ACATGT	1 cut(s)	1032
Psp124BI	GAGCTC	1 cut(s)	116
Psp1406I	AACGTT	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	559, 1161
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	2 cut(s)	559, 1161
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	164, 759
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PstI	CTGCAG	1 cut(s)	1105
RsaI	GTAC	2 cut(s)	986, 1058
RsaNI	GTAC	2 cut(s)	985, 1057
RseI	CAYNNNNRTG	2 cut(s)	93, 134
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	122, 462, 741, 848
SatI	GCNGC	2 cut(s)	1101, 1157
Sau3AI	GATC	6 cut(s)	103, 142, 181, 336, 680, 831
Sau96I	GGNCC	2 cut(s)	164, 759
SchI	GAGTC	4 cut(s)	22, 711, 964, 1102
ScrFI	CCNGG	4 cut(s)	43, 51, 561, 1163
SduI	GDGCHC	4 cut(s)	56, 116, 354, 609
SfaNI	GCATC	3 cut(s)	85, 650, 1096
SfcI	CTRYAG	1 cut(s)	1101
SmiMI	CAYNNNNRTG	2 cut(s)	93, 134
SphI	GCATGC	1 cut(s)	1133
SsiI	CCGC	3 cut(s)	8, 39, 148
SspMI	CTAG	2 cut(s)	279, 456
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	41, 49, 559, 1161
StyI	CCWWGG	2 cut(s)	237, 746
TaaI	ACNGT	4 cut(s)	547, 637, 967, 1066
TaiI	ACGT	3 cut(s)	75, 275, 986
TaqI	TCGA	2 cut(s)	91, 106
TfiI	GAWTC	2 cut(s)	159, 173
Tru1I	TTAA	4 cut(s)	122, 462, 741, 848
Tru9I	TTAA	4 cut(s)	122, 462, 741, 848
TscAI	CASTG	3 cut(s)	642, 972, 1071
TseFI	GTSAC	2 cut(s)	259, 967
TseI	GCWGC	2 cut(s)	1100, 1156
Tsp45I	GTSAC	2 cut(s)	259, 967
TspDTI	ATGAA	4 cut(s)	425, 574, 825, 1016
TspRI	CASTG	3 cut(s)	642, 972, 1071
VneI	GTGCAC	2 cut(s)	350, 605
XagI	CCTNNNNNAGG	1 cut(s)	1176
XapI	RAATTY	3 cut(s)	572, 812, 1009
XceI	RCATGY	3 cut(s)	267, 1036, 1133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	2 cut(s)	279, 456
Zsp2I	ATGCAT	3 cut(s)	949, 1189, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.