RLG00000014072

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008158
Physical Location & Seq
Forward (+)
46424636 .. 46426435
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014072

Sequence Viewer

Length: 912 bp
ATGGTAAATGGATCAGATGCTGGTCATTGTTTTCTTTCTATATCAATTTCAGCTCTCGGTGAAACTAAAACTTTGATTGAGAATGATGACGCTGAAAGCAACAGGAAGCGACGATCCAATCCTGAAGGTATTGACATGCAAGTGAGAAATGCTCAAGGAGGTCAAGCCAAAAGAGGAATGGTTTTGTCTTTCCAGCCCCTTTCACTTGCTTTCAACCATGTGAATTACTATTTGGATATGCCTGCTGAAATGAAAACCCAAGGGATTGAAGAGACCCGACTGCAACTACTGAGAGATATTAGTGGTGCATTTAGGCCAGGAAGTATTACCATCTCGGGTTACCCAAAGAACCAAGAGACATTTGCTCGGGTCAGGGGTTACTGTGAGCAGAATGACATTCATTCTCCATTTATTACTGTTTATGAATCTCTCTTATACTCTGCATGGCTGCGTCTTGATAAAGATGTCAAGACGGATACACGAAAGATGTTTGTTGATGAGGTTATGGACTTGGTCGAGCCTCATCCATTAAGGAATGCTTTGGTTGGACTTCCAGCAGTTGATGGACTTTCAACTGAGCAAAGGAAAAGGCTCACCATTGCAGTGGAATTGGTTGCAAATCCTTCTATCATCTTCATGGATGCGCCAACCTCAGGTCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACCGCAAGAAACACTGTGGATACAGGACGAACTGTTGTCTGCACGATTCATCAACCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGACCTCTGGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATACCAGGGGTTACCAAGATCAAAGATGGTTACAATCCTGCTACCTGA

Protein Analysis

304

Amino Acids

33.63

Weight (kDa)

6.11

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 96 - 218 4.5e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 825
AciI CCGC 1 cut(s) 693
AclWI GGATC 2 cut(s) 19, 108
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 691
AfiI CCNNNNNNNGG 1 cut(s) 653
AgsI TTSAA 4 cut(s) 214, 269, 573, 851
AjnI CCWGG 2 cut(s) 316, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 5 cut(s) 53, 674, 767, 778, 844
AluI AGCT 5 cut(s) 53, 674, 767, 778, 844
Alw26I GTCTC 2 cut(s) 266, 350
AlwI GGATC 2 cut(s) 19, 108
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 2 cut(s) 334, 366
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 448, 671, 674
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 2 cut(s) 71, 586
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 2 cut(s) 334, 366
AvaII GGWCC 1 cut(s) 818
AxyI CCTNAGG 1 cut(s) 652
BbvI GCAGC 3 cut(s) 435, 661, 683
BccI CCATC 3 cut(s) 338, 557, 884
BciT130I CCWGG 2 cut(s) 318, 870
BciVI GTATCC 2 cut(s) 469, 703
BcoDI GTCTC 2 cut(s) 266, 350
BfaI CTAG 2 cut(s) 666, 747
BfuI GTATCC 2 cut(s) 469, 703
BisI GCNGC 3 cut(s) 449, 672, 675
BlsI GCNGC 3 cut(s) 450, 673, 676
Bme1390I CCNGG 2 cut(s) 318, 870
Bme18I GGWCC 1 cut(s) 818
BmeT110I CYCGRG 2 cut(s) 334, 366
BmgT120I GGNCC 1 cut(s) 818
BmrFI CCNGG 2 cut(s) 318, 870
BmsI GCATC 3 cut(s) 7, 631, 652
BplI GAGNNNNNCTC 2 cut(s) 136, 168
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 259, 869
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse21I CCTNAGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 2 cut(s) 318, 870
BseDI CCNNGG 2 cut(s) 259, 869
BseGI GGATG 2 cut(s) 523, 646
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 281, 567, 666
BseRI GAGGAG 1 cut(s) 810
BseXI GCAGC 3 cut(s) 435, 661, 683
BsgI GTGCAG 1 cut(s) 715
BshFI GGCC 1 cut(s) 316
BsiHKCI CYCGRG 2 cut(s) 334, 366
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 2 cut(s) 266, 350
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 2 cut(s) 334, 366
Bsp119I TTCGAA 1 cut(s) 762
Bsp143I GATC 3 cut(s) 11, 113, 882
BspACI CCGC 1 cut(s) 693
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 3 cut(s) 282, 568, 665
BspPI GGATC 2 cut(s) 19, 108
BspT104I TTCGAA 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 259, 869
BssMI GATC 3 cut(s) 11, 113, 882
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 318, 870
Bst4CI ACNGT 4 cut(s) 383, 418, 706, 724
Bst6I CTCTTC 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 290, 576, 652
BstEII GGTNACC 2 cut(s) 338, 874
BstF5I GGATG 2 cut(s) 523, 646
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 3 cut(s) 14, 116, 885
BstMAI GTCTC 2 cut(s) 266, 350
BstMBI GATC 3 cut(s) 11, 113, 882
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 2 cut(s) 318, 870
BstNSI RCATGY 1 cut(s) 139
BstPI GGTNACC 2 cut(s) 338, 874
BstSCI CCNGG 2 cut(s) 316, 868
BstV1I GCAGC 3 cut(s) 435, 661, 683
BstXI CCANNNNNNTGG 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 652
BsuI GTATCC 2 cut(s) 469, 703
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 2 cut(s) 523, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 609, 702
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 818
CseI GACGC 2 cut(s) 98, 440
Csp6I GTAC 1 cut(s) 690
CviAII CATG 4 cut(s) 136, 218, 444, 637
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 3 cut(s) 290, 576, 652
DpnI GATC 3 cut(s) 13, 115, 884
DpnII GATC 3 cut(s) 11, 113, 882
DrdI GACNNNNNNGTC 1 cut(s) 825
DseDI GACNNNNNNGTC 1 cut(s) 825
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 652
Eco88I CYCGRG 2 cut(s) 334, 366
Eco91I GGTNACC 2 cut(s) 338, 874
EcoO65I GGTNACC 2 cut(s) 338, 874
EcoRII CCWGG 2 cut(s) 316, 868
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 139, 221, 447, 640
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FatI CATG 4 cut(s) 135, 217, 443, 636
Fnu4HI GCNGC 3 cut(s) 449, 672, 675
FokI GGATG 2 cut(s) 510, 653
Fsp4HI GCNGC 3 cut(s) 449, 672, 675
FspBI CTAG 2 cut(s) 666, 747
GlaI GCGC 1 cut(s) 645
GluI GCNGC 3 cut(s) 449, 672, 675
HaeIII GGCC 1 cut(s) 316
HgaI GACGC 2 cut(s) 98, 440
HhaI GCGC 1 cut(s) 646
Hin1II CATG 4 cut(s) 139, 221, 447, 640
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HindIII AAGCTT 2 cut(s) 765, 842
HinfI GANTC 2 cut(s) 425, 736
HphI GGTGA 2 cut(s) 71, 586
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 122, 455, 469, 659
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 119, 633
HpyCH4III ACNGT 4 cut(s) 383, 418, 706, 724
HpyCH4V TGCA 7 cut(s) 139, 283, 308, 443, 602, 617, 732
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 3 cut(s) 290, 576, 652
Hsp92II CATG 4 cut(s) 139, 221, 447, 640
HspAI GCGC 1 cut(s) 644
Kzo9I GATC 3 cut(s) 11, 113, 882
Lsp1109I GCAGC 3 cut(s) 435, 661, 683
LweI GCATC 3 cut(s) 7, 631, 652
MaeI CTAG 2 cut(s) 666, 747
MaeIII GTNAC 5 cut(s) 338, 377, 805, 874, 893
MalI GATC 3 cut(s) 13, 115, 884
MboI GATC 3 cut(s) 11, 113, 882
MboII GAAGA 2 cut(s) 281, 625
MluCI AATT 3 cut(s) 45, 223, 608
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 9 cut(s) 152, 167, 493, 531, 661, 788, 791, 831, 853
MseI TTAA 2 cut(s) 530, 785
MslI CAYNNNNRTG 4 cut(s) 140, 602, 635, 683
MspA1I CMGCKG 1 cut(s) 674
MspR9I CCNGG 2 cut(s) 318, 870
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 318, 870
MwoI GCNNNNNNNGC 1 cut(s) 671
NdeII GATC 3 cut(s) 11, 113, 882
NlaIII CATG 4 cut(s) 139, 221, 447, 640
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 139
NspV TTCGAA 1 cut(s) 762
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 425, 736
PflFI GACNNNGTC 1 cut(s) 512
PkrI GCNGC 3 cut(s) 450, 673, 676
Psp6I CCWGG 2 cut(s) 316, 868
PspEI GGTNACC 2 cut(s) 338, 874
PspGI CCWGG 2 cut(s) 316, 868
PspPI GGNCC 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 4 cut(s) 140, 602, 635, 683
SaqAI TTAA 2 cut(s) 530, 785
SatI GCNGC 3 cut(s) 449, 672, 675
Sau3AI GATC 3 cut(s) 11, 113, 882
Sau96I GGNCC 1 cut(s) 818
ScrFI CCNGG 2 cut(s) 318, 870
SfaNI GCATC 3 cut(s) 7, 631, 652
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 4 cut(s) 140, 602, 635, 683
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 3 cut(s) 45, 223, 608
SsiI CCGC 1 cut(s) 693
SspI AATATT 1 cut(s) 854
SspMI CTAG 2 cut(s) 666, 747
StyD4I CCNGG 2 cut(s) 316, 868
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 4 cut(s) 383, 418, 706, 724
TaqI TCGA 2 cut(s) 516, 762
TasI AATT 3 cut(s) 45, 223, 608
TfiI GAWTC 2 cut(s) 425, 736
Tru1I TTAA 2 cut(s) 530, 785
Tru9I TTAA 2 cut(s) 530, 785
TscAI CASTG 2 cut(s) 609, 709
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 3 cut(s) 448, 671, 674
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 6 cut(s) 266, 389, 438, 625, 728, 803
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 609, 709
Tth111I GACNNNGTC 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 818
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 2 cut(s) 666, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.