Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

2370524 .. 2370910

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1033700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATTTTCGGTTCCAAGGAGCTGTGATCTATTATGCTAGTCGTTTTCGATTCATCAAGTGCTCCAAAAACATCAGCAGCCTGCCAACAGCTGCTAATTATACAAGGGTTCCATGTTTGGCCGCAACAAACGGGAGCTATTTCTATGCTGTTTATGTCCCCGAGTACTATTATCCCCCTCAACCGTCATGCTCGCTTGTTGCAGTGGCTCCGGTAGATTTTCATCCGGACATGAAGTTCACTTCTTACGAAGCCGTCATGAAACTATTGCAGGCCGGGTTTGATATTGGATGGTCGGTTAAGTGCAGGGACTGCTCTTTGGCTGGTAAGGGATGCGCAGTAAGTTCATGGGTTAAGCCACTCACCTACGAATGCTACACAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

8.66

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	120
AfaI	GTAC	1 cut(s)	167
AloI	GAACNNNNNNTCC	3 cut(s)	28, 221, 253
AluBI	AGCT	3 cut(s)	23, 92, 138
AluI	AGCT	3 cut(s)	23, 92, 138
Alw21I	GWGCWC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	120, 273
ApeKI	GCWGC	2 cut(s)	78, 92
AspLEI	GCGC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	79, 90
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	3 cut(s)	79, 93, 123
BlsI	GCNGC	3 cut(s)	80, 94, 124
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	14, 111, 210
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	211, 226
Bse8I	GATNNNNATC	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	223, 296, 338
BseJI	GATNNNNATC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	79, 90
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	122, 275
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	212, 227, 276
BslFI	GGGAC	2 cut(s)	143, 323
BsmFI	GGGAC	2 cut(s)	143, 323
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	122, 275
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	122, 275
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	14, 111, 210
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	83, 194, 273
BstF5I	GGATG	3 cut(s)	223, 296, 338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	79, 90
BsuRI	GGCC	2 cut(s)	122, 275
BtsCI	GGATG	3 cut(s)	223, 296, 338
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	83, 194, 273
CaiI	CAGNNNCTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	5 cut(s)	114, 189, 232, 259, 348
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	117, 192, 235, 262, 351
FaiI	YATR	9 cut(s)	36, 102, 115, 147, 156, 190, 233, 260, 349
FaqI	GGGAC	2 cut(s)	143, 323
FatI	CATG	5 cut(s)	113, 188, 231, 258, 347
Fnu4HI	GCNGC	3 cut(s)	79, 93, 123
FokI	GGATG	3 cut(s)	210, 303, 345
Fsp4HI	GCNGC	3 cut(s)	79, 93, 123
FspBI	CTAG	1 cut(s)	39
FspI	TGCGCA	1 cut(s)	337
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	79, 93, 123
HaeIII	GGCC	2 cut(s)	122, 275
HapII	CCGG	3 cut(s)	212, 227, 276
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	117, 192, 235, 262, 351
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	3 cut(s)	212, 227, 276
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	227, 259
Hpy8I	GTNNAC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	203, 271, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	117, 192, 235, 262, 351
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	20, 68, 135, 214
LpnPI	CCDG	8 cut(s)	95, 225, 240, 257, 289, 292, 309, 366
Lsp1109I	GCAGC	2 cut(s)	79, 90
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	1 cut(s)	189
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	2 cut(s)	300, 354
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	212, 227, 276
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	5 cut(s)	117, 192, 235, 262, 351
NlaIV	GGNNCC	3 cut(s)	14, 111, 210
NsbI	TGCGCA	1 cut(s)	337
PagI	TCATGA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	80, 94, 124
PspN4I	GGNNCC	3 cut(s)	14, 111, 210
PstNI	CAGNNNCTG	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	300, 354
SatI	GCNGC	3 cut(s)	79, 93, 123
Sau3AI	GATC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	25, 94, 140, 368, 385
SfaNI	GCATC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	300, 354
Tru9I	TTAA	2 cut(s)	300, 354
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	2 cut(s)	78, 92
TspDTI	ATGAA	5 cut(s)	43, 212, 248, 275, 336
TspRI	CASTG	1 cut(s)	210
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.