Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

55203274 .. 55205312

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGAGTCTAAGGAACATCAGCCAGGCTAATGTAGCTGCTTATAACTACACGGCTGTTCCATGTTTAACTAGAGTTAATGGGACTAATTACTTCTATGCTGTTTATGATGGCTACTACTTAGCTCGTCCTCGTCAACCACCATGCTCGCTTATTTCAGTGGCTATTTCAGATTATCATGAAAATTTTGTTGAGCCCCTATCTTATGAAGCCATCATGAAGCAATTGGAGGCAGGGTTTGATCTGGGATGGTCCGTTGAGTGTCGCGACTGCTCTTTAGCTGGCAAATCATGTGGAGTAGATGTAAGTGATCTAAATTTGGGTACTAAGCCACTCCCCTATCAATGTTATGAAGAGTACAAAGAACCCACTGAGCTCCAAATAATCTTAATATTTGTGGGAATTGCTTTGGGAGGTATAAATTATATAAGTATATACATTTGGATTTTCGTTTTCGGGCATTTGTCTCCAATCAAACTTCTACTCTATTTGTCAAGTGCTCCAGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

170

Amino Acids

19.06

Weight (kDa)

4.94

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AccII	CGCG	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	184, 316
AfaI	GTAC	2 cut(s)	325, 359
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	38, 125, 281, 376
AluI	AGCT	4 cut(s)	38, 125, 281, 376
Alw21I	GWGCWC	2 cut(s)	378, 502
Alw26I	GTCTC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	184, 316
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	198, 378
Bbv12I	GWGCWC	2 cut(s)	378, 502
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	104, 221, 243
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 288, 318
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	378, 502
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	198, 378, 502
Bsp143I	GATC	2 cut(s)	241, 310
Bsp68I	TCGCGA	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	2 cut(s)	178, 216
BssMI	GATC	2 cut(s)	241, 310
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	149, 283
BstDEI	CTNAG	4 cut(s)	11, 121, 327, 372
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	244, 313
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	241, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	165, 369
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	149, 283
CciI	TCATGA	2 cut(s)	178, 216
Cfr13I	GGNCC	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	324, 358
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	5 cut(s)	63, 144, 179, 217, 291
CviQI	GTAC	2 cut(s)	324, 358
DdeI	CTNAG	4 cut(s)	11, 121, 327, 372
DpnI	GATC	2 cut(s)	243, 312
DpnII	GATC	2 cut(s)	241, 310
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	198, 378
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	198, 378
FaeI	CATG	5 cut(s)	66, 147, 182, 220, 294
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	62, 143, 178, 216, 290
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	198, 378
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	486
Hin1II	CATG	5 cut(s)	66, 147, 182, 220, 294
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	4 cut(s)	179, 217, 266, 503
Hpy8I	GTNNAC	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	11, 121, 327, 372
Hsp92II	CATG	5 cut(s)	66, 147, 182, 220, 294
Kzo9I	GATC	2 cut(s)	241, 310
LmnI	GCTCC	2 cut(s)	381, 505
LpnPI	CCDG	5 cut(s)	11, 38, 219, 230, 267
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	72
MalI	GATC	2 cut(s)	243, 312
MboI	GATC	2 cut(s)	241, 310
MboII	GAAGA	2 cut(s)	16, 365
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	3 cut(s)	198, 378, 502
MluCI	AATT	6 cut(s)	88, 184, 224, 316, 402, 421
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	141, 223, 407
MseI	TTAA	3 cut(s)	68, 78, 389
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	241, 310
NlaIII	CATG	5 cut(s)	66, 147, 182, 220, 294
NruI	TCGCGA	1 cut(s)	267
PagI	TCATGA	2 cut(s)	178, 216
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	252
RruI	TCGCGA	1 cut(s)	267
RsaI	GTAC	2 cut(s)	325, 359
RsaNI	GTAC	2 cut(s)	324, 358
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	68, 78, 389
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	241, 310
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	3 cut(s)	198, 378, 502
SetI	ASST	5 cut(s)	40, 127, 283, 378, 418
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	6 cut(s)	88, 184, 224, 316, 402, 421
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	6 cut(s)	88, 184, 224, 316, 402, 421
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	68, 78, 389
Tru9I	TTAA	3 cut(s)	68, 78, 389
TscAI	CASTG	2 cut(s)	165, 376
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	5 cut(s)	17, 195, 222, 233, 366
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	165, 376
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	184, 316
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.