Rh4DG333000

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004230
Physical Location & Seq
Forward (+)
55581054 .. 55582212
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG333000.1

Sequence Viewer

Length: 702 bp
ATGAAGAGTCTGAGGAAAGAAGAATCAGCAGCTGCATCCATTCTCCTCTATTCTGTGCTGACTTCTCTATTTTTCCTTGCAGTTCAAGCAAGAAGTCATAAACCAGGGTGTGCTTCTTCGTGTGGAGATATCGAAAACATCAGCTACCCTTTTCACCTAAAGGTTGATCCAGTAGGCTGCGGTGACCCTGACTATGAACTATCATGTGTGAACAACAAAACCATCCTCGAAATATTTCCAGGCAAATACTATGTCAAGAACATTTCTTATGATGAACATATTATCCGTTTGGTTGATGTCAACTTTGCCGATAGAAGCAGCTGCAGCCTTCCATCAAACATCAGCCAGGCTAATGTAGCTGCTTATAACTACACGGCTGTTCCATGTTTAACTAGAGTTAATGGGACTAATTACTTCTATGCTGTTTATGATGGCTACTACTTAGCTCGTCCTCGTCAACCACCATGCTCGCTTATTTCAGTGGCTATTTCAGATTATCATGAAAATTTTGTTGAGCCCCTATCTTATGAAGCCATCATGAAGCAATTGGAGGCAGGGTTTGATCTGGGATGGTCCGTTGAGTGTCGCGACTGCTCTTTAGCTGGCAAATCATGTGGAGTAGATATGTATGAGACGACATCAGCGGAAGAAGAATCAGCAGCAATCATCGACGCCAGCATTAATCAGCAGTTCTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

233

Amino Acids

25.79

Weight (kDa)

4.75

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 37 - 99 1.9e-19 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccII CGCG 1 cut(s) 588
AciI CCGC 2 cut(s) 180, 644
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 672
AgsI TTSAA 2 cut(s) 86, 697
AjnI CCWGG 3 cut(s) 103, 238, 345
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 6 cut(s) 32, 144, 321, 359, 446, 602
AluI AGCT 6 cut(s) 32, 144, 321, 359, 446, 602
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 32
ApeKI GCWGC 8 cut(s) 29, 32, 177, 318, 321, 324, 359, 659
ApoI RAATTY 1 cut(s) 505
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 146, 194
AvaII GGWCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 519
BbvI GCAGC 8 cut(s) 19, 41, 164, 308, 330, 336, 346, 671
BccI CCATC 5 cut(s) 230, 340, 425, 542, 564
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 3 cut(s) 105, 240, 347
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 8 cut(s) 30, 33, 178, 319, 322, 325, 360, 660
BlsI GCNGC 8 cut(s) 31, 34, 179, 320, 323, 326, 361, 661
Bme1390I CCNGG 3 cut(s) 105, 240, 347
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 573
BmrFI CCNGG 3 cut(s) 105, 240, 347
BmsI GCATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 3 cut(s) 105, 240, 347
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 3 cut(s) 35, 222, 575
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 8 cut(s) 19, 41, 164, 308, 330, 336, 346, 671
Bsh1236I CGCG 1 cut(s) 588
BslFI GGGAC 1 cut(s) 418
BsmAI GTCTC 1 cut(s) 626
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 166, 562
Bsp68I TCGCGA 1 cut(s) 588
BspACI CCGC 2 cut(s) 180, 644
BspFNI CGCG 1 cut(s) 588
BspHI TCATGA 2 cut(s) 499, 537
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 2 cut(s) 166, 562
BssNI GRCGYC 1 cut(s) 672
Bst2UI CCWGG 3 cut(s) 105, 240, 347
BstACI GRCGYC 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 470, 604, 676
BstDEI CTNAG 2 cut(s) 11, 442
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 3 cut(s) 35, 222, 575
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 2 cut(s) 169, 565
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 2 cut(s) 166, 562
BstMWI GCNNNNNNNGC 3 cut(s) 86, 324, 356
BstNI CCWGG 3 cut(s) 105, 240, 347
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 103, 238, 345
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 8 cut(s) 19, 41, 164, 308, 330, 336, 346, 671
BtsCI GGATG 3 cut(s) 35, 222, 575
BtsIMutI CAGTG 1 cut(s) 486
BtuMI TCGCGA 1 cut(s) 588
Cac8I GCNNGC 3 cut(s) 470, 604, 676
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 2 cut(s) 499, 537
Cfr13I GGNCC 1 cut(s) 573
CseI GACGC 1 cut(s) 680
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 6 cut(s) 204, 384, 465, 500, 538, 612
DdeI CTNAG 2 cut(s) 11, 442
DpnI GATC 2 cut(s) 168, 564
DpnII GATC 2 cut(s) 166, 562
Eco24I GRGCYC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 103, 238, 345
EcoRV GATATC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 519
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 6 cut(s) 207, 387, 468, 503, 541, 615
FaqI GGGAC 1 cut(s) 418
FatI CATG 6 cut(s) 203, 383, 464, 499, 537, 611
Fnu4HI GCNGC 8 cut(s) 30, 33, 178, 319, 322, 325, 360, 660
FokI GGATG 3 cut(s) 22, 209, 582
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 8 cut(s) 30, 33, 178, 319, 322, 325, 360, 660
FspBI CTAG 1 cut(s) 393
GluI GCNGC 8 cut(s) 30, 33, 178, 319, 322, 325, 360, 660
HgaI GACGC 1 cut(s) 680
Hin1I GRCGYC 1 cut(s) 672
Hin1II CATG 6 cut(s) 207, 387, 468, 503, 541, 615
HincII GTYRAC 2 cut(s) 301, 458
HindII GTYRAC 2 cut(s) 301, 458
HinfI GANTC 3 cut(s) 7, 23, 653
HphI GGTGA 2 cut(s) 146, 194
Hpy166II GTNNAC 3 cut(s) 211, 301, 458
Hpy188I TCNGA 2 cut(s) 12, 493
Hpy188III TCNNGA 5 cut(s) 256, 500, 538, 587, 694
Hpy8I GTNNAC 3 cut(s) 211, 301, 458
Hpy99I CGWCG 1 cut(s) 674
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 35, 80, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 324, 356
HpyF3I CTNAG 2 cut(s) 11, 442
Hsp92I GRCGYC 1 cut(s) 672
Hsp92II CATG 6 cut(s) 207, 387, 468, 503, 541, 615
Kzo9I GATC 2 cut(s) 166, 562
Lsp1109I GCAGC 8 cut(s) 19, 41, 164, 308, 330, 336, 346, 671
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 168, 564
MboI GATC 2 cut(s) 166, 562
MboII GAAGA 5 cut(s) 16, 32, 108, 659, 662
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 3 cut(s) 409, 505, 545
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 5 cut(s) 6, 56, 236, 462, 544
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 389, 399, 681
MspA1I CMGCKG 3 cut(s) 32, 321, 644
MspR9I CCNGG 3 cut(s) 105, 240, 347
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 3 cut(s) 105, 240, 347
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 3 cut(s) 86, 324, 356
NdeII GATC 2 cut(s) 166, 562
NlaIII CATG 6 cut(s) 207, 387, 468, 503, 541, 615
NmuCI GTSAC 1 cut(s) 182
NruI TCGCGA 1 cut(s) 588
PagI TCATGA 2 cut(s) 499, 537
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 23, 653
PkrI GCNGC 8 cut(s) 31, 34, 179, 320, 323, 326, 361, 661
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 103, 238, 345
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 3 cut(s) 103, 238, 345
PspPI GGNCC 1 cut(s) 573
PstI CTGCAG 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 2 cut(s) 32, 321
RruI TCGCGA 1 cut(s) 588
SaqAI TTAA 3 cut(s) 389, 399, 681
SatI GCNGC 8 cut(s) 30, 33, 178, 319, 322, 325, 360, 660
Sau3AI GATC 2 cut(s) 166, 562
Sau96I GGNCC 1 cut(s) 573
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 3 cut(s) 105, 240, 347
SduI GDGCHC 1 cut(s) 519
SetI ASST 8 cut(s) 34, 146, 159, 165, 323, 361, 448, 604
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 573
Sse9I AATT 3 cut(s) 409, 505, 545
SsiI CCGC 2 cut(s) 180, 644
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 3 cut(s) 103, 238, 345
TaqI TCGA 3 cut(s) 132, 228, 669
TasI AATT 3 cut(s) 409, 505, 545
TfiI GAWTC 2 cut(s) 23, 653
Tru1I TTAA 3 cut(s) 389, 399, 681
Tru9I TTAA 3 cut(s) 389, 399, 681
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 8 cut(s) 29, 32, 177, 318, 321, 324, 359, 659
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 17, 210, 288, 516, 543, 554
TspGWI ACGGA 2 cut(s) 275, 565
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 573
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.