Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

1995491 .. 1996861

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGATTTCCTTTAAGAAGATGGGCCATGAGCTTCATCCGAAATTATTTACCCAAAGTTCTGAGATTCATAACTTTTCTGCAAAAGCATATAATATAATCATGAGGACGGTCCAATATACATCTTCTCTTCTCTATTCTCTGCTGATTCTGCCATTTTTCGTTCAAATTCAAGCACAAACCAACTGTTCGTCTTCATGCGGAGAAATAAAAAACATCAGCTACCCTTTTCGCCTCAAGGGCGATCCATCCGGCTGCGGCGACTCCGGTTACGAGCTCTCTTGCGTCGATAACAAACCCATCCTAGAGATTTTCCCCGGGAAATACTACGTGCGCAACATTTCCTACTATGATCACACACTCCGTTTGGTCGACGTCAACCTCGCCAATGGAACCTGCGGCCTTCCGTCTGGTCCTGTCGAAACAACGAACGGGTTTGTCCGGGATGCTCGATTCATGGGATATGGGTGGAACCCAGGAAGTCGTTTCCGGTTCGTCAAGTGCTCAACAAACATCAGCAGCGTGCCGGAAGCTGCTAATCACACAGTGGTTCCTTGCCTGACAAGAAACGGGACTTACGTCTATGCTGTTTATGATGGCGATTACTCGTATTATGAGCCTCAAAAATCATGCTCTGTCATTTCGTTGGCTCCTGTCGATCTTCGTAAAGATGCTACGAAGTTCAATTCTTATGAGGCCGTCATGGAACTATTGAAAGCTGGCTTTGAAGTTGGATGGTCAGTTAAATGCAGAGATTGCTCTTTGGCTGGTAAACAATGCGTAGTAAAATCAATGGATAAGCCACTCACCTATATCTGTCAAAAAGAGTACAAAGAATTGACAAGAGATGAAGGAAACTGGATAATTGCTGCAATCGTTGTGGGAGGTCTGATTGCTCTGGGAATTATCATTGGTATAATTGTATTTGTCATCCGAAGATGTCGGAGAAGACGAAATGTAGCTGATAACACGAACAAGAATCCGCAGAATCGAATTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

335

Amino Acids

37.44

Weight (kDa)

8.93

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
Acc16I	TGCGCA	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	4 cut(s)	201, 258, 399, 983
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	1 cut(s)	830
AgsI	TTSAA	5 cut(s)	167, 173, 685, 715, 728
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	6 cut(s)	34, 222, 277, 533, 719, 962
AluI	AGCT	6 cut(s)	34, 222, 277, 533, 719, 962
Alw21I	GWGCWC	2 cut(s)	279, 506
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	25, 400, 696
ApeKI	GCWGC	4 cut(s)	255, 519, 533, 869
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	3 cut(s)	25, 112, 413
AsuC2I	CCSGG	3 cut(s)	318, 319, 443
AsuHPI	GGTGA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	112, 413
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	2 cut(s)	186, 955
Bbv12I	GWGCWC	2 cut(s)	279, 506
BbvI	GCAGC	4 cut(s)	242, 520, 531, 856
BccI	CCATC	5 cut(s)	16, 256, 308, 590, 729
BceAI	ACGGC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	3 cut(s)	318, 319, 443
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	256, 259, 400, 520, 534, 870
BlsI	GCNGC	6 cut(s)	257, 260, 401, 521, 535, 871
Bme1390I	CCNGG	4 cut(s)	318, 319, 443, 477
Bme18I	GGWCC	2 cut(s)	112, 413
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	25, 112, 413
BmiI	GGNNCC	4 cut(s)	394, 473, 552, 651
BmrFI	CCNGG	4 cut(s)	318, 319, 443, 477
BmsI	GCATC	2 cut(s)	436, 661
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	186, 955
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	3 cut(s)	318, 319, 443
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	316, 317, 475
BsaWI	WCCGGW	2 cut(s)	266, 489
Bse1I	ACTGG	1 cut(s)	863
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	316, 317, 475
BseGI	GGATG	6 cut(s)	37, 248, 300, 451, 740, 930
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	863
BseXI	GCAGC	4 cut(s)	242, 520, 531, 856
BshFI	GGCC	3 cut(s)	27, 402, 698
BsiHKAI	GWGCWC	2 cut(s)	279, 506
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	6 cut(s)	252, 267, 318, 442, 490, 527
BslFI	GGGAC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	27, 402, 698
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	279, 506
Bsp143I	GATC	3 cut(s)	244, 352, 658
BspACI	CCGC	4 cut(s)	201, 258, 399, 983
BspANI	GGCC	3 cut(s)	27, 402, 698
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	394, 473, 552, 651
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	3 cut(s)	316, 317, 475
BssMI	GATC	3 cut(s)	244, 352, 658
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	112, 188, 547
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	524, 721
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	6 cut(s)	37, 248, 300, 451, 740, 930
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	3 cut(s)	247, 355, 661
BstMBI	GATC	3 cut(s)	244, 352, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 240, 756
BstNI	CCWGG	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	316, 317, 441, 475
BstV1I	GCAGC	4 cut(s)	242, 520, 531, 856
BstV2I	GAAGAC	2 cut(s)	186, 955
BsuRI	GGCC	3 cut(s)	27, 402, 698
BtsCI	GGATG	6 cut(s)	37, 248, 300, 451, 740, 930
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	524, 721
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	25, 112, 413
Cfr9I	CCCGGG	1 cut(s)	317
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	829
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	6 cut(s)	29, 103, 198, 457, 630, 703
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	246, 354, 660
DpnII	GATC	3 cut(s)	244, 352, 658
DraIII	CACNNNGTG	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	112, 413
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	6 cut(s)	32, 106, 201, 460, 633, 706
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	6 cut(s)	28, 102, 197, 456, 629, 702
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	6 cut(s)	256, 259, 400, 520, 534, 870
FokI	GGATG	6 cut(s)	24, 235, 287, 458, 747, 917
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	6 cut(s)	256, 259, 400, 520, 534, 870
FspBI	CTAG	1 cut(s)	305
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	6 cut(s)	256, 259, 400, 520, 534, 870
HaeIII	GGCC	3 cut(s)	27, 402, 698
HapII	CCGG	6 cut(s)	252, 267, 318, 442, 490, 527
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	6 cut(s)	32, 106, 201, 460, 633, 706
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	2 cut(s)	373, 379
HindII	GTYRAC	2 cut(s)	373, 379
HinfI	GANTC	6 cut(s)	67, 148, 263, 453, 979, 988
HpaII	CCGG	6 cut(s)	252, 267, 318, 442, 490, 527
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	3 cut(s)	373, 379, 773
Hpy188I	TCNGA	5 cut(s)	42, 64, 891, 935, 945
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	373, 379, 773
Hpy99I	CGWCG	2 cut(s)	290, 377
HpyAV	CCTTC	2 cut(s)	413, 845
HpyCH4III	ACNGT	3 cut(s)	112, 188, 547
HpyCH4IV	ACGT	3 cut(s)	330, 375, 579
HpyCH4V	TGCA	3 cut(s)	83, 750, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 240, 756
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	3 cut(s)	330, 375, 579
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	32, 106, 201, 460, 633, 706
HspAI	GCGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	244, 352, 658
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	4 cut(s)	242, 520, 531, 856
LweI	GCATC	2 cut(s)	436, 661
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	3 cut(s)	330, 375, 579
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	246, 354, 660
MboI	GATC	3 cut(s)	244, 352, 658
MboII	GAAGA	7 cut(s)	31, 117, 122, 186, 653, 948, 960
MhlI	GDGCHC	2 cut(s)	279, 506
MluCI	AATT	8 cut(s)	44, 168, 685, 836, 864, 903, 918, 993
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	712, 923
MnlI	CCTC	6 cut(s)	99, 245, 392, 630, 688, 878
MseI	TTAA	2 cut(s)	15, 744
MspI	CCGG	6 cut(s)	252, 267, 318, 442, 490, 527
MspR9I	CCNGG	4 cut(s)	318, 319, 443, 477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	151, 240, 756
NciI	CCSGG	3 cut(s)	318, 319, 443
NdeII	GATC	3 cut(s)	244, 352, 658
NlaIII	CATG	6 cut(s)	32, 106, 201, 460, 633, 706
NlaIV	GGNNCC	4 cut(s)	394, 473, 552, 651
NsbI	TGCGCA	1 cut(s)	335
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	576, 949
PfeI	GAWTC	5 cut(s)	67, 148, 453, 979, 988
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	6 cut(s)	257, 260, 401, 521, 535, 871
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	4 cut(s)	394, 473, 552, 651
PspPI	GGNCC	3 cut(s)	25, 112, 413
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SacI	GAGCTC	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	15, 744
SatI	GCNGC	6 cut(s)	256, 259, 400, 520, 534, 870
Sau3AI	GATC	3 cut(s)	244, 352, 658
Sau96I	GGNCC	3 cut(s)	25, 112, 413
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	4 cut(s)	318, 319, 443, 477
SduI	GDGCHC	2 cut(s)	279, 506
SfaNI	GCATC	2 cut(s)	436, 661
SinI	GGWCC	2 cut(s)	112, 413
SmaI	CCCGGG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	8 cut(s)	44, 168, 685, 836, 864, 903, 918, 993
SsiI	CCGC	4 cut(s)	201, 258, 399, 983
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	316, 317, 441, 475
TaaI	ACNGT	3 cut(s)	112, 188, 547
TaiI	ACGT	3 cut(s)	333, 378, 582
TaqI	TCGA	6 cut(s)	288, 372, 420, 451, 657, 991
TasI	AATT	8 cut(s)	44, 168, 685, 836, 864, 903, 918, 993
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	2 cut(s)	261, 402
TfiI	GAWTC	5 cut(s)	67, 148, 453, 979, 988
Tru1I	TTAA	2 cut(s)	15, 744
Tru9I	TTAA	2 cut(s)	15, 744
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	4 cut(s)	255, 519, 533, 869
TspDTI	ATGAA	5 cut(s)	26, 59, 186, 445, 864
TspGWI	ACGGA	2 cut(s)	353, 396
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	112, 413
XapI	RAATTY	1 cut(s)	168
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.