Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

63997369 .. 63998527

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGAGTCTGAGGAAAGAAGAATCAGCAGCTGCATCCATTCTCCTCTATTCTGTGCTGACTTCTCTATTTTTCCTTGCAGTTCAAGCAAGAAGTCATAAACCAGGAAACATCAGCCAGGCTAATGTAGCTGCTTATAACTACACGGCTGTTCCATGTTTAACTAGAGTTAATGGGACTAATTACTTCTATGCTGTTTATGATGGCTACTACTTAGCTCGTCCTCGTCAACCACCATGCTCGCTTATTTCAGTGGCTATTTCAGATTATCATGAAAATTTTGTTGAGCCCCTATCTTATGAAGCCATCATGAAGCAATTGGAGGCAGGGTTTGATCTGGGATGGTCCGTTGAGTGTCGCGACTGCTCTTTAGCTGGCAAATCATGTGGAGTAGATATGTATGAGACGACATCAGCGGAAGAAGAATCAGCAGCAATCATCGACGCCAGCATTAATCAGCAGTTCTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

4.83

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	86, 469
AjnI	CCWGG	2 cut(s)	103, 117
AluBI	AGCT	4 cut(s)	32, 131, 218, 374
AluI	AGCT	4 cut(s)	32, 131, 218, 374
Alw26I	GTCTC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	29, 32, 131, 431
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	19, 41, 118, 443
BccI	CCATC	3 cut(s)	197, 314, 336
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	105, 119
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	4 cut(s)	30, 33, 132, 432
BlsI	GCNGC	4 cut(s)	31, 34, 133, 433
Bme1390I	CCNGG	2 cut(s)	105, 119
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	105, 119
BmsI	GCATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
BseBI	CCWGG	2 cut(s)	105, 119
BseGI	GGATG	2 cut(s)	35, 347
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	19, 41, 118, 443
Bsh1236I	CGCG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	334
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	2 cut(s)	271, 309
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	105, 119
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	242, 376, 448
BstDEI	CTNAG	2 cut(s)	11, 214
BstF5I	GGATG	2 cut(s)	35, 347
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 128
BstNI	CCWGG	2 cut(s)	105, 119
BstSCI	CCNGG	2 cut(s)	103, 117
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	19, 41, 118, 443
BtsCI	GGATG	2 cut(s)	35, 347
BtsIMutI	CAGTG	1 cut(s)	258
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	242, 376, 448
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	2 cut(s)	271, 309
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	5 cut(s)	156, 237, 272, 310, 384
DdeI	CTNAG	2 cut(s)	11, 214
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	103, 117
EcoT38I	GRGCYC	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	5 cut(s)	159, 240, 275, 313, 387
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	155, 236, 271, 309, 383
Fnu4HI	GCNGC	4 cut(s)	30, 33, 132, 432
FokI	GGATG	2 cut(s)	22, 354
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	30, 33, 132, 432
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	30, 33, 132, 432
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	159, 240, 275, 313, 387
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	7, 23, 425
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	12, 265
Hpy188III	TCNNGA	4 cut(s)	272, 310, 359, 466
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	35, 80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 128
HpyF3I	CTNAG	2 cut(s)	11, 214
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	159, 240, 275, 313, 387
Kzo9I	GATC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	90, 104, 117, 131, 312, 323, 360, 460
Lsp1109I	GCAGC	4 cut(s)	19, 41, 118, 443
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	165
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	4 cut(s)	16, 32, 431, 434
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	181, 277, 317
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	6, 56, 234, 316
MseI	TTAA	3 cut(s)	161, 171, 453
MspA1I	CMGCKG	2 cut(s)	32, 416
MspR9I	CCNGG	2 cut(s)	105, 119
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	105, 119
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	86, 128
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	159, 240, 275, 313, 387
NruI	TCGCGA	1 cut(s)	360
PagI	TCATGA	2 cut(s)	271, 309
PfeI	GAWTC	2 cut(s)	23, 425
PkrI	GCNGC	4 cut(s)	31, 34, 133, 433
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	103, 117
PspGI	CCWGG	2 cut(s)	103, 117
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	161, 171, 453
SatI	GCNGC	4 cut(s)	30, 33, 132, 432
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	105, 119
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	34, 133, 220, 376
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	345
Sse9I	AATT	3 cut(s)	181, 277, 317
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	103, 117
TaqI	TCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	181, 277, 317
TfiI	GAWTC	2 cut(s)	23, 425
Tru1I	TTAA	3 cut(s)	161, 171, 453
Tru9I	TTAA	3 cut(s)	161, 171, 453
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	4 cut(s)	29, 32, 131, 431
TspDTI	ATGAA	4 cut(s)	17, 288, 315, 326
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.