Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

180933 .. 182073

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgaggaaaggctcaacatcaattgcatcaaccattctttttcctgtcctagcttttctactcttccttgttcaagttcaagcaagaaacttgaatgaagatgattgttcttcttcctgtggagatatccacaacatcaagtaccctttccgccttaaaggcgatccatccggctgcggtgaccccgactttgaattctcatgtgtcaacaacaaaaccatcctcgaaatatttccgggtaaatactacgtcaaaaacatttcatacactgacaatctactccgtttagttgacgtcaacttcgcaaacggaagctgcagcctcccatctggttctatagaaaattcagatggtttcgtccaagacgttcgttacaagggtcatgtcaactacacaactggatctcgtatccgatttgtcaagtgctcaagaaatgtcaccctgcagaataatgagaagtattattataactacacggaggttccttgtttgacaagaaatggaacttacacgtatgctgttctagatggaatgtacacggctatggattatccaccgacgtgctcacttgtttcgctggctcctgtggattatcatgaagatgtttataagtcccctacttatgaagccatagtgaaagtgttgcaggcagggtttgatctcggttggtctgttgagtgcagggattgctctttggctggtaagcattgcggaatcgatgacaaagcatgggacactaggcctatcatattccaatgtgcaaaagattacaaagaactcacacagtttgaagcaagattgatcattgcgggaatctgtgtggcaggtgtaattggtctattgcttatagttgctgtattggtgtttgttatccgcaaatataagaaacgaaacaagcccgtgaagaatctacagaaccagcaatcgtcggcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

312

Amino Acids

34.98

Weight (kDa)

8.14

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	468, 609
AarI	CACCTGC	1 cut(s)	815
AatII	GACGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	815
AciI	CCGC	5 cut(s)	151, 177, 711, 809, 874
AclWI	GGATC	2 cut(s)	158, 409
AcsI	RAATTY	2 cut(s)	194, 343
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	143, 536
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	74, 80, 94, 194, 791
AjiI	CACGTC	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	559
AluBI	AGCT	2 cut(s)	53, 315
AluI	AGCT	2 cut(s)	53, 315
Alw21I	GWGCWC	2 cut(s)	428, 566
AlwI	GGATC	2 cut(s)	158, 409
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	3 cut(s)	174, 315, 318
ApoI	RAATTY	2 cut(s)	194, 343
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 205, 284, 316
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	191, 430
Bbv12I	GWGCWC	2 cut(s)	428, 566
BbvI	GCAGC	3 cut(s)	161, 302, 330
BccI	CCATC	5 cut(s)	175, 227, 334, 344, 521
BceAI	ACGGC	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	237
BfaI	CTAG	3 cut(s)	50, 524, 738
BfmI	CTRYAG	4 cut(s)	316, 336, 443, 911
BfuAI	ACCTGC	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	419
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	3 cut(s)	175, 316, 319
BlsI	GCNGC	3 cut(s)	176, 317, 320
Bme1390I	CCNGG	1 cut(s)	237
BmgBI	CACGTC	1 cut(s)	561
BmiI	GGNNCC	2 cut(s)	483, 582
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	706, 804
BseCI	ATCGAT	1 cut(s)	717
BseGI	GGATG	2 cut(s)	167, 219
BseMI	GCAATG	2 cut(s)	706, 804
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	161, 302, 330
BsgI	GTGCAG	1 cut(s)	700
BshFI	GGCC	1 cut(s)	742
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	2 cut(s)	428, 566
BsiSI	CCGG	2 cut(s)	171, 236
BslFI	GGGAC	2 cut(s)	598, 746
BsmFI	GGGAC	2 cut(s)	598, 746
BsnI	GGCC	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	428, 566
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	163, 401, 658, 801
BspACI	CCGC	5 cut(s)	151, 177, 711, 809, 874
BspANI	GGCC	1 cut(s)	742
BspDI	ATCGAT	1 cut(s)	717
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	483, 582
BspMAI	CTGCAG	2 cut(s)	320, 447
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	2 cut(s)	158, 409
BsrDI	GCAATG	2 cut(s)	706, 804
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	4 cut(s)	163, 401, 658, 801
BssNI	GRCGYC	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	579, 648
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	167, 219
BstKTI	GATC	4 cut(s)	166, 404, 661, 804
BstMBI	GATC	4 cut(s)	163, 401, 658, 801
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 687
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	4 cut(s)	316, 336, 443, 911
BstV1I	GCAGC	3 cut(s)	161, 302, 330
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	717
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	742
BsuTUI	ATCGAT	1 cut(s)	717
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	167, 219
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	2 cut(s)	579, 648
CciI	TCATGA	1 cut(s)	595
ClaI	ATCGAT	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	142, 535
CviAII	CATG	4 cut(s)	201, 383, 596, 729
CviQI	GTAC	2 cut(s)	142, 535
DpnI	GATC	4 cut(s)	165, 403, 660, 803
DpnII	GATC	4 cut(s)	163, 401, 658, 801
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	4 cut(s)	204, 386, 599, 732
FaqI	GGGAC	2 cut(s)	598, 746
FatI	CATG	4 cut(s)	200, 382, 595, 728
FauI	CCCGC	1 cut(s)	802
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	3 cut(s)	175, 316, 319
FokI	GGATG	2 cut(s)	154, 206
Fsp4HI	GCNGC	3 cut(s)	175, 316, 319
FspBI	CTAG	3 cut(s)	50, 524, 738
GluI	GCNGC	3 cut(s)	175, 316, 319
HaeIII	GGCC	1 cut(s)	742
HapII	CCGG	2 cut(s)	171, 236
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	204, 386, 599, 732
HincII	GTYRAC	4 cut(s)	208, 292, 298, 388
HindII	GTYRAC	4 cut(s)	208, 292, 298, 388
HinfI	GANTC	3 cut(s)	714, 813, 907
HpaII	CCGG	2 cut(s)	171, 236
HphI	GGTGA	2 cut(s)	191, 430
Hpy166II	GTNNAC	5 cut(s)	208, 292, 298, 388, 537
Hpy188I	TCNGA	2 cut(s)	349, 413
Hpy188III	TCNNGA	3 cut(s)	429, 524, 596
Hpy8I	GTNNAC	5 cut(s)	208, 292, 298, 388, 537
Hpy99I	CGWCG	2 cut(s)	562, 931
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4IV	ACGT	5 cut(s)	249, 294, 366, 512, 560
HpyCH4V	TGCA	6 cut(s)	26, 318, 445, 646, 681, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 687
HpySE526I	ACGT	5 cut(s)	249, 294, 366, 512, 560
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	204, 386, 599, 732
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	163, 401, 658, 801
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	3 cut(s)	161, 302, 330
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	3 cut(s)	50, 524, 738
MaeII	ACGT	5 cut(s)	249, 294, 366, 512, 560
MaeIII	GTNAC	3 cut(s)	179, 371, 436
MalI	GATC	4 cut(s)	165, 403, 660, 803
MboI	GATC	4 cut(s)	163, 401, 658, 801
MboII	GAAGA	6 cut(s)	55, 102, 105, 110, 611, 916
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	428, 566
MluCI	AATT	4 cut(s)	21, 194, 343, 831
MnlI	CCTC	3 cut(s)	233, 332, 472
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	542, 559, 600
MspI	CCGG	2 cut(s)	171, 236
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	159, 687
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	163, 401, 658, 801
NlaIII	CATG	4 cut(s)	204, 386, 599, 732
NlaIV	GGNNCC	2 cut(s)	483, 582
NmuCI	GTSAC	2 cut(s)	179, 436
OliI	CACNNNNGTG	1 cut(s)	559
PagI	TCATGA	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	742
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	714, 813, 907
PkrI	GCNGC	3 cut(s)	176, 317, 320
Ppu21I	YACGTR	1 cut(s)	513
PsiI	TTATAA	2 cut(s)	468, 609
PspEI	GGTNACC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	483, 582
PstI	CTGCAG	2 cut(s)	320, 447
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	2 cut(s)	143, 536
RsaNI	GTAC	2 cut(s)	142, 535
RseI	CAYNNNNRTG	3 cut(s)	542, 559, 600
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	175, 316, 319
Sau3AI	GATC	4 cut(s)	163, 401, 658, 801
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	428, 566
SetI	ASST	9 cut(s)	55, 252, 297, 317, 369, 483, 515, 563, 829
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	4 cut(s)	316, 336, 443, 911
SmiMI	CAYNNNNRTG	3 cut(s)	542, 559, 600
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	4 cut(s)	21, 194, 343, 831
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	5 cut(s)	151, 177, 711, 809, 874
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	3 cut(s)	50, 524, 738
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	786
TaiI	ACGT	5 cut(s)	252, 297, 369, 515, 563
TaqI	TCGA	2 cut(s)	225, 717
TasI	AATT	4 cut(s)	21, 194, 343, 831
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	714, 813, 907
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	179, 436
TseI	GCWGC	3 cut(s)	174, 315, 318
Tsp45I	GTSAC	2 cut(s)	179, 436
TspDTI	ATGAA	4 cut(s)	111, 252, 612, 639
TspGWI	ACGGA	3 cut(s)	272, 324, 491
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	194, 343
XbaI	TCTAGA	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	50, 524, 738
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.