Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Reverse (-)

30643339 .. 30644928

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACGAGGGCAACAAGTACTGCATCTTCTGTTCTCTATTCTGTGCTGCTGATTTTTTTATGTTTCGTTCGAGTTCAAGTTCAAGCAAGATATCATAAACAAGCCAATTGCTCTCGTTCGTGCGGAGAAATCCAAAACATCAAGTACCCTTTTCGCCTAAAGGGTGATCCATCAGGCTGTGGTGACCCTGACTATGAATTTTCCTGCGTGGACGACAGAACCATCTTAGAAATCTTTCCAGGCAAATTCTACGTGCACAACATTTCATATAACGATCAAATACTCCGTTTGGTTGATGTCAACTTTGCCAATGGAAGCTGCAGCCTTCCGTCTGGCTCTGTTTTATCAGCAGACAGGGACGTCAAGGATTCTCGATTCGGTGGATTTGTAAACAGCTCTCGCAGTCTTTTTCGATTTATGAAGTGCTCCAAAAACATCAGTAGCCTGCAAACAGCTGCTAATTATACAAGAGTTCCATGTTTGACAACAAACGGGAGTTACTTGTATGCTATTTATGACCGCGATTATTATTATCATCGTCAACCACAACCATCGTGCTCGCTTATTTCAGTGGCGCCTGTGGATTTTGATCAGGACATTAAGTTCCCTTCTTATGAAGCTATCATGGAACTTTTGCAGGCTGGCTTTGATGTTGGATGGTCGGTTGAGTGCAGGGATTGTTCTTTGGCTGGCAAGGGCTGTTTGGTAAGTTCATGGGATCAGCCAATCACCTATGTATGTTCAAGAGAGTACAAAGAACCCACATCACTTCAAATTATCTTAATATTGGTGGGAATTGGTATAGGAGCTCTAGTTGGTCTATTCTTTATAATTCTCATATTGGTGGTCGTTATCCGCAAGTATCGGAGAGGACGAAGAAAAGCAGCCAAGAAGAAGCTGCAGAATCAGCAATGCTTGACACCAACAATCAGCAATTCTGGAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

317

Amino Acids

35.45

Weight (kDa)

8.93

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
AasI	GACNNNNNNGTC	1 cut(s)	359
AatII	GACGTC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	574
AccII	CGCG	1 cut(s)	522
AciI	CCGC	3 cut(s)	123, 520, 856
AclWI	GGATC	2 cut(s)	161, 726
AcsI	RAATTY	2 cut(s)	197, 245
AcyI	GRCGYC	2 cut(s)	360, 575
AfaI	GTAC	3 cut(s)	19, 146, 752
AgsI	TTSAA	4 cut(s)	77, 83, 744, 773
AjnI	CCWGG	1 cut(s)	238
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	6 cut(s)	318, 396, 455, 620, 809, 898
AluI	AGCT	6 cut(s)	318, 396, 455, 620, 809, 898
Alw21I	GWGCWC	4 cut(s)	258, 428, 560, 811
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	161, 726
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	6 cut(s)	46, 318, 321, 455, 884, 898
ApoI	RAATTY	2 cut(s)	197, 245
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	176, 194, 721
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
Bbv12I	GWGCWC	4 cut(s)	258, 428, 560, 811
BbvI	GCAGC	6 cut(s)	33, 305, 333, 442, 885, 896
BccI	CCATC	4 cut(s)	178, 230, 559, 651
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	589
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	319, 899
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	6 cut(s)	47, 319, 322, 456, 885, 899
BlsI	GCNGC	6 cut(s)	48, 320, 323, 457, 886, 900
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	2 cut(s)	360, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bse3DI	GCAATG	1 cut(s)	917
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	662
BseJI	GATNNNNATC	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	917
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	6 cut(s)	33, 305, 333, 442, 885, 896
BsgI	GTGCAG	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	522
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	4 cut(s)	258, 428, 560, 811
BslFI	GGGAC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	371
Bsp1286I	GDGCHC	4 cut(s)	258, 428, 560, 811
Bsp143I	GATC	4 cut(s)	166, 274, 589, 718
BspACI	CCGC	3 cut(s)	123, 520, 856
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	2 cut(s)	323, 903
BspPI	GGATC	2 cut(s)	161, 726
BspT107I	GGYRCC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	917
BssMI	GATC	4 cut(s)	166, 274, 589, 718
BssNI	GRCGYC	2 cut(s)	360, 575
Bst2UI	CCWGG	1 cut(s)	240
BstACI	GRCGYC	2 cut(s)	360, 575
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	5 cut(s)	446, 560, 639, 643, 691
BstDEI	CTNAG	1 cut(s)	226
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	662
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	4 cut(s)	169, 277, 592, 721
BstMBI	GATC	4 cut(s)	166, 274, 589, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	2 cut(s)	319, 899
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	6 cut(s)	33, 305, 333, 442, 885, 896
BtsCI	GGATG	1 cut(s)	662
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	5 cut(s)	446, 560, 639, 643, 691
CfoI	GCGC	1 cut(s)	577
Csp6I	GTAC	3 cut(s)	18, 145, 751
CviAII	CATG	3 cut(s)	477, 625, 714
CviQI	GTAC	3 cut(s)	18, 145, 751
DdeI	CTNAG	1 cut(s)	226
DinI	GGCGCC	1 cut(s)	576
DpnI	GATC	4 cut(s)	168, 276, 591, 720
DpnII	GATC	4 cut(s)	166, 274, 589, 718
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	809
Eco91I	GGTNACC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	811
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
FaeI	CATG	3 cut(s)	480, 628, 717
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	476, 624, 713
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	6 cut(s)	47, 319, 322, 456, 885, 899
FokI	GGATG	1 cut(s)	669
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	6 cut(s)	47, 319, 322, 456, 885, 899
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	6 cut(s)	47, 319, 322, 456, 885, 899
HaeII	RGCGCY	1 cut(s)	578
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	2 cut(s)	360, 575
Hin1II	CATG	3 cut(s)	480, 628, 717
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	2 cut(s)	301, 542
HindII	GTYRAC	2 cut(s)	301, 542
HinfI	GANTC	3 cut(s)	368, 375, 904
HphI	GGTGA	3 cut(s)	176, 194, 721
Hpy166II	GTNNAC	5 cut(s)	211, 256, 301, 391, 542
Hpy188I	TCNGA	1 cut(s)	867
Hpy188III	TCNNGA	4 cut(s)	372, 593, 744, 939
Hpy8I	GTNNAC	5 cut(s)	211, 256, 301, 391, 542
HpyAV	CCTTC	2 cut(s)	335, 618
HpyCH4IV	ACGT	2 cut(s)	252, 360
HpyCH4V	TGCA	7 cut(s)	23, 256, 321, 448, 637, 672, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	2 cut(s)	252, 360
Hsp92I	GRCGYC	2 cut(s)	360, 575
Hsp92II	CATG	3 cut(s)	480, 628, 717
HspAI	GCGC	1 cut(s)	575
KasI	GGCGCC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	166, 274, 589, 718
LmnI	GCTCC	2 cut(s)	431, 806
Lsp1109I	GCAGC	6 cut(s)	33, 305, 333, 442, 885, 896
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	2 cut(s)	252, 360
MaeIII	GTNAC	2 cut(s)	182, 497
MalI	GATC	4 cut(s)	168, 276, 591, 720
MboI	GATC	4 cut(s)	166, 274, 589, 718
MboII	GAAGA	3 cut(s)	18, 888, 904
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	4 cut(s)	258, 428, 560, 811
MluCI	AATT	9 cut(s)	106, 197, 245, 460, 774, 795, 831, 934, 946
Mly113I	GGCGCC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	1 cut(s)	863
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	600, 782, 949
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	907
NarI	GGCGCC	1 cut(s)	575
NdeII	GATC	4 cut(s)	166, 274, 589, 718
NlaIII	CATG	3 cut(s)	480, 628, 717
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	368, 375, 904
PkrI	GCNGC	6 cut(s)	48, 320, 323, 457, 886, 900
PluTI	GGCGCC	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	253
PsiI	TTATAA	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	576
PstI	CTGCAG	2 cut(s)	323, 903
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	19, 146, 752
RsaNI	GTAC	3 cut(s)	18, 145, 751
RseI	CAYNNNNRTG	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	3 cut(s)	600, 782, 949
SatI	GCNGC	6 cut(s)	47, 319, 322, 456, 885, 899
Sau3AI	GATC	4 cut(s)	166, 274, 589, 718
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	4 cut(s)	258, 428, 560, 811
SetI	ASST	9 cut(s)	255, 320, 363, 398, 457, 622, 734, 811, 900
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	2 cut(s)	319, 899
SfoI	GGCGCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	842
Sse9I	AATT	9 cut(s)	106, 197, 245, 460, 774, 795, 831, 934, 946
SsiI	CCGC	3 cut(s)	123, 520, 856
SspDI	GGCGCC	1 cut(s)	574
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	811
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	2 cut(s)	255, 363
TaqI	TCGA	3 cut(s)	70, 373, 412
TasI	AATT	9 cut(s)	106, 197, 245, 460, 774, 795, 831, 934, 946
TatI	WGTACW	2 cut(s)	17, 750
TfiI	GAWTC	3 cut(s)	368, 375, 904
Tru1I	TTAA	3 cut(s)	600, 782, 949
Tru9I	TTAA	3 cut(s)	600, 782, 949
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	6 cut(s)	46, 318, 321, 455, 884, 898
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	210, 255, 434, 630, 702
TspGWI	ACGGA	2 cut(s)	275, 318
TspRI	CASTG	1 cut(s)	576
VneI	GTGCAC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	197, 245
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	361
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.