Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Reverse (-)

9773508 .. 9774664

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006698

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGAGTCTGAGGAAAGAAGAATCAGCAGCTGCATCCATTCTCCTCTATTCTGAGCTGACTTCTCTATTTTTCTTTGCAGTTCAAGCAAGAAGTCATAAACCAGCCCTTCCATCGGGATCTGTTGTATCGAGGGATGGATATGTCAATGATTTTCGCTTCTTGGCACTTGGCACAAATCAAACTTACACACAGTTTGTGAAGTGCTCCAGAAACATCAGCCAGGCTATTGTAGCTGCTTATAACTACACGGCTGTTCCATGTTTAACTAGAGTTAATGGGACTAATTACTCCTATGCTGTTTATGATGGCTACTACTTTGCTCGTCCTCGTCAACCACCATGCTCGCTTATTTCAGTGGCTATTTCAGATTATCATGAAAATTTTGTTGAGCCCCTATCTTATGAAGCCATCATGAAGCAATTGGAGGCAGGGTTTGATCTGGGATGGTCCGTTGAGTGTCGCGACAGCTCTTTAGCTGGCAAATCATGTGGAGTAGATGTAAGTGATCTAAATTTGGGTACTAAGCCACCCCCCTATCAATGTTATGAAGGTACAGAGTACAAAGAACCCACTGAGCTCCAAATAATCTTAATATTTGTGGGAATTGCTTTGGGAGCTCTGTTTGCTGTAGTGCTTTTAGTGGTTTTATTGGTGTTTCGCATCCGCAGATGCATGAGACGACATCAGCGGGAGAAGAATCAGCAGCAATCATCGACGCCAGCATTAATCAGCAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

248

Amino Acids

27.55

Weight (kDa)

8.41

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccII	CGCG	1 cut(s)	465
AciI	CCGC	2 cut(s)	667, 691
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	382, 514
AcyI	GRCGYC	1 cut(s)	719
AfaI	GTAC	3 cut(s)	523, 556, 563
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	7 cut(s)	32, 58, 236, 471, 479, 580, 620
AluI	AGCT	7 cut(s)	32, 58, 236, 471, 479, 580, 620
Alw21I	GWGCWC	3 cut(s)	209, 582, 622
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	29, 32, 236, 706
ApoI	RAATTY	2 cut(s)	382, 514
AseI	ATTAAT	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	450
BanII	GRGCYC	3 cut(s)	396, 582, 622
Bbv12I	GWGCWC	3 cut(s)	209, 582, 622
BbvI	GCAGC	4 cut(s)	19, 41, 223, 718
BccI	CCATC	5 cut(s)	121, 131, 302, 419, 441
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	673
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	4 cut(s)	30, 33, 237, 707
BlsI	GCNGC	4 cut(s)	31, 34, 238, 708
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	44, 662, 672
BpmI	CTGGAG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	719
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	4 cut(s)	35, 142, 452, 663
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	45, 567
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	19, 41, 223, 718
Bsh1236I	CGCG	1 cut(s)	465
BsiHKAI	GWGCWC	3 cut(s)	209, 582, 622
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	673
BsmBI	CGTCTC	1 cut(s)	673
BsmFI	GGGAC	1 cut(s)	295
Bsp1286I	GDGCHC	4 cut(s)	209, 396, 582, 622
Bsp143I	GATC	3 cut(s)	119, 439, 508
Bsp68I	TCGCGA	1 cut(s)	465
BspACI	CCGC	2 cut(s)	667, 691
BspCNI	CTCAG	2 cut(s)	46, 568
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	376, 414
BspPI	GGATC	1 cut(s)	127
BssMI	GATC	3 cut(s)	119, 439, 508
BssNI	GRCGYC	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	347, 481, 723
BstDEI	CTNAG	4 cut(s)	11, 54, 525, 576
BstF5I	GGATG	4 cut(s)	35, 142, 452, 663
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	3 cut(s)	122, 442, 511
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	3 cut(s)	119, 439, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 233, 617, 626
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	19, 41, 223, 718
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BtsCI	GGATG	4 cut(s)	35, 142, 452, 663
BtsIMutI	CAGTG	2 cut(s)	363, 573
BtuMI	TCGCGA	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	347, 481, 723
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	2 cut(s)	376, 414
Cfr13I	GGNCC	1 cut(s)	450
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	522, 555, 562
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	261, 342, 377, 415, 489, 676
CviQI	GTAC	3 cut(s)	522, 555, 562
DdeI	CTNAG	4 cut(s)	11, 54, 525, 576
DpnI	GATC	3 cut(s)	121, 441, 510
DpnII	GATC	3 cut(s)	119, 439, 508
Ecl136II	GAGCTC	2 cut(s)	580, 620
Eco24I	GRGCYC	3 cut(s)	396, 582, 622
Eco47I	GGWCC	1 cut(s)	450
Eco53kI	GAGCTC	2 cut(s)	580, 620
EcoICRI	GAGCTC	2 cut(s)	580, 620
EcoRII	CCWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	677
EcoT38I	GRGCYC	3 cut(s)	396, 582, 622
Esp3I	CGTCTC	1 cut(s)	673
FaeI	CATG	6 cut(s)	264, 345, 380, 418, 492, 679
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	6 cut(s)	260, 341, 376, 414, 488, 675
FauI	CCCGC	1 cut(s)	684
Fnu4HI	GCNGC	4 cut(s)	30, 33, 237, 707
FokI	GGATG	4 cut(s)	22, 149, 459, 650
FriOI	GRGCYC	3 cut(s)	396, 582, 622
Fsp4HI	GCNGC	4 cut(s)	30, 33, 237, 707
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	4 cut(s)	30, 33, 237, 707
GsuI	CTGGAG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	719
Hin1II	CATG	6 cut(s)	264, 345, 380, 418, 492, 679
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	7, 23, 700
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	12, 55, 370
Hpy188III	TCNNGA	5 cut(s)	117, 210, 377, 415, 464
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	721
HpyAV	CCTTC	2 cut(s)	119, 545
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	35, 80, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 233, 617, 626
HpyF3I	CTNAG	4 cut(s)	11, 54, 525, 576
Hsp92I	GRCGYC	1 cut(s)	719
Hsp92II	CATG	6 cut(s)	264, 345, 380, 418, 492, 679
Kzo9I	GATC	3 cut(s)	119, 439, 508
LmnI	GCTCC	3 cut(s)	212, 585, 617
LpnPI	CCDG	8 cut(s)	117, 209, 223, 236, 417, 428, 465, 735
Lsp1109I	GCAGC	4 cut(s)	19, 41, 223, 718
LweI	GCATC	3 cut(s)	44, 662, 672
MaeI	CTAG	1 cut(s)	270
MalI	GATC	3 cut(s)	121, 441, 510
MboI	GATC	3 cut(s)	119, 439, 508
MboII	GAAGA	3 cut(s)	16, 32, 709
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	4 cut(s)	209, 396, 582, 622
MluCI	AATT	5 cut(s)	286, 382, 422, 514, 606
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	6, 56, 126, 339, 421
Mph1103I	ATGCAT	1 cut(s)	677
MseI	TTAA	5 cut(s)	266, 276, 593, 728, 742
MspA1I	CMGCKG	2 cut(s)	32, 691
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	4 cut(s)	86, 233, 617, 626
NdeII	GATC	3 cut(s)	119, 439, 508
NlaIII	CATG	6 cut(s)	264, 345, 380, 418, 492, 679
NruI	TCGCGA	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	677
PagI	TCATGA	2 cut(s)	376, 414
PfeI	GAWTC	2 cut(s)	23, 700
PkrI	GCNGC	4 cut(s)	31, 34, 238, 708
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	243
Psp124BI	GAGCTC	2 cut(s)	582, 622
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	465
RsaI	GTAC	3 cut(s)	523, 556, 563
RsaNI	GTAC	3 cut(s)	522, 555, 562
SacI	GAGCTC	2 cut(s)	582, 622
SaqAI	TTAA	5 cut(s)	266, 276, 593, 728, 742
SatI	GCNGC	4 cut(s)	30, 33, 237, 707
Sau3AI	GATC	3 cut(s)	119, 439, 508
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	4 cut(s)	209, 396, 582, 622
SetI	ASST	8 cut(s)	34, 60, 238, 473, 481, 556, 582, 622
SfaNI	GCATC	3 cut(s)	44, 662, 672
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	450
Sse9I	AATT	5 cut(s)	286, 382, 422, 514, 606
SsiI	CCGC	2 cut(s)	667, 691
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	2 cut(s)	582, 622
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	131, 716
TasI	AATT	5 cut(s)	286, 382, 422, 514, 606
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	23, 700
Tru1I	TTAA	5 cut(s)	266, 276, 593, 728, 742
Tru9I	TTAA	5 cut(s)	266, 276, 593, 728, 742
TscAI	CASTG	2 cut(s)	363, 580
TseI	GCWGC	4 cut(s)	29, 32, 236, 706
TspDTI	ATGAA	5 cut(s)	17, 393, 420, 431, 564
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	2 cut(s)	363, 580
VpaK11BI	GGWCC	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	2 cut(s)	382, 514
XspI	CTAG	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.