Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

1924027 .. 1925241

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGGACGGTCCAATATACATCTTCTCTTCTCTATTCTCTGCTGATTATGTTATTTTTCGTTCAAATTCAAGCACAACCCAACTGTTCGTCTTCGTGCGGAGAAATAAAAAACATCAGCTACCCTTTTCGCCTAAAGGGCGATCCATCCGGCTGTGGTGACTCCGATTACGAGCTCTCTTGTGTCGACAACAAAGCCATCCTAGAGATATTCCCCGGGAAATACTACGTGCACAATATTTCCTACTATGATCAAACAATCCGGTTGGTCGACGTCAACTTTGCAAACGGAAGCTGCGGCCTTCCGTCTGGTCCTGTCGAAACAACGGACGGCTACGTCCGGGATGTTCGATTCAGGGGATACGGGTTGAACCCAGGAAGTCGTTTCCGGTTCGTCAAGTGCTCAACAAACATCAGCAGCGTGCCGGAAGCTGCTAATCACACAACGGTTCCTTGCTTGACAAGAAACGGGACTTACGTCTACGCCGTTTATGATGGCGATTACTCGTATTATGAACCTCAAAAGTCATGCTCTGTCATTTCGTTGGCTCCTGTCGATCTTCGTAAAGATGTTGCGAAGTTCAATTCTTATGAGGCCGTCATGGAACTACTGAAAGCTGGCTTTGAAATTGGATGGTCAGTTAAGTGCAGAGATTGCTCTTTGGCTGGTAAACAATGCGTAGTAAAATCAATGGATAAACCACTCATCTATATCTGTGCAAAAGAATACAAAGAACTGACAAGAGCTGAAGGAAACTGGATAATTGCTGCAATCGTTGTGGGAGGTCTGATTGCTCTGGGAGTTATCATTGGTATAATTGTAGTTGTCATCCGAAGATGTCGGAGAAGACCAAATGCAGCAGATAACACGAACAAGAATCTGCAGAATCGGATTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

301

Amino Acids

33.35

Weight (kDa)

8.6

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	3 cut(s)	186, 270, 480
AciI	CCGC	2 cut(s)	99, 297
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	65, 71, 370, 583, 626
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	6 cut(s)	120, 175, 294, 431, 617, 746
AluI	AGCT	6 cut(s)	120, 175, 294, 431, 617, 746
Alw21I	GWGCWC	3 cut(s)	177, 234, 404
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	298, 594
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	5 cut(s)	294, 417, 431, 767, 857
ApoI	RAATTY	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	2 cut(s)	10, 311
AsuC2I	CCSGG	3 cut(s)	216, 217, 341
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	10, 311
BaeGI	GKGCMC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	84, 853
Bbv12I	GWGCWC	3 cut(s)	177, 234, 404
BbvI	GCAGC	5 cut(s)	281, 418, 429, 754, 869
BccI	CCATC	4 cut(s)	154, 206, 488, 627
BceAI	ACGGC	3 cut(s)	346, 470, 581
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	3 cut(s)	216, 217, 341
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	881
BfuI	GTATCC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	6 cut(s)	295, 298, 418, 432, 768, 858
BlsI	GCNGC	6 cut(s)	296, 299, 419, 433, 769, 859
Bme1390I	CCNGG	4 cut(s)	216, 217, 341, 375
Bme18I	GGWCC	2 cut(s)	10, 311
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	10, 311
BmiI	GGNNCC	2 cut(s)	450, 549
BmrFI	CCNGG	4 cut(s)	216, 217, 341, 375
BmsI	GCATC	1 cut(s)	886
BoxI	GACNNNNGTC	1 cut(s)	476
BpiI	GAAGAC	2 cut(s)	84, 853
BpuMI	CCSGG	3 cut(s)	216, 217, 341
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	214, 215, 373
BsaWI	WCCGGW	2 cut(s)	261, 387
Bse1I	ACTGG	1 cut(s)	761
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	214, 215, 373
BseGI	GGATG	5 cut(s)	146, 198, 349, 638, 828
BseNI	ACTGG	1 cut(s)	761
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	5 cut(s)	281, 418, 429, 754, 869
BsgI	GTGCAG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	300, 596
BsiHKAI	GWGCWC	3 cut(s)	177, 234, 404
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	6 cut(s)	150, 216, 262, 340, 388, 425
BslFI	GGGAC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	300, 596
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	177, 234, 404
Bsp143I	GATC	3 cut(s)	142, 250, 556
BspACI	CCGC	2 cut(s)	99, 297
BspANI	GGCC	2 cut(s)	300, 596
BspLI	GGNNCC	2 cut(s)	450, 549
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	214, 215, 373
BssMI	GATC	3 cut(s)	142, 250, 556
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	10, 86, 448
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	422, 619
BstF5I	GGATG	5 cut(s)	146, 198, 349, 638, 828
BstKTI	GATC	3 cut(s)	145, 253, 559
BstMBI	GATC	3 cut(s)	142, 250, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 654
BstNI	CCWGG	1 cut(s)	375
BstPAI	GACNNNNGTC	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	214, 215, 339, 373
BstSFI	CTRYAG	1 cut(s)	881
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	5 cut(s)	281, 418, 429, 754, 869
BstV2I	GAAGAC	2 cut(s)	84, 853
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	300, 596
BtsCI	GGATG	5 cut(s)	146, 198, 349, 638, 828
Cac8I	GCNNGC	2 cut(s)	422, 619
Cfr13I	GGNCC	2 cut(s)	10, 311
Cfr9I	CCCGGG	1 cut(s)	215
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	2 cut(s)	528, 601
DpnI	GATC	3 cut(s)	144, 252, 558
DpnII	GATC	3 cut(s)	142, 250, 556
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	10, 311
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	531, 604
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	527, 600
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	3 cut(s)	186, 270, 480
Fnu4HI	GCNGC	6 cut(s)	295, 298, 418, 432, 768, 858
FokI	GGATG	5 cut(s)	133, 185, 356, 645, 815
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	6 cut(s)	295, 298, 418, 432, 768, 858
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	6 cut(s)	295, 298, 418, 432, 768, 858
HaeIII	GGCC	2 cut(s)	300, 596
HapII	CCGG	6 cut(s)	150, 216, 262, 340, 388, 425
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	531, 604
HincII	GTYRAC	3 cut(s)	187, 271, 277
HindII	GTYRAC	3 cut(s)	187, 271, 277
HinfI	GANTC	4 cut(s)	161, 351, 877, 886
HpaII	CCGG	6 cut(s)	150, 216, 262, 340, 388, 425
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	6 cut(s)	187, 232, 271, 277, 481, 671
Hpy188I	TCNGA	5 cut(s)	166, 789, 833, 843, 891
Hpy8I	GTNNAC	6 cut(s)	187, 232, 271, 277, 481, 671
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	311, 743
HpyCH4III	ACNGT	3 cut(s)	10, 86, 448
HpyCH4IV	ACGT	4 cut(s)	228, 273, 336, 477
HpyCH4V	TGCA	7 cut(s)	232, 284, 648, 719, 770, 857, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 654
HpySE526I	ACGT	4 cut(s)	228, 273, 336, 477
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	531, 604
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	142, 250, 556
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	5 cut(s)	281, 418, 429, 754, 869
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	4 cut(s)	228, 273, 336, 477
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	144, 252, 558
MboI	GATC	3 cut(s)	142, 250, 556
MboII	GAAGA	6 cut(s)	15, 20, 84, 551, 846, 858
MhlI	GDGCHC	3 cut(s)	177, 234, 404
MluCI	AATT	5 cut(s)	66, 583, 627, 762, 816
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	3 cut(s)	528, 586, 776
MseI	TTAA	1 cut(s)	642
MspI	CCGG	6 cut(s)	150, 216, 262, 340, 388, 425
MspR9I	CCNGG	4 cut(s)	216, 217, 341, 375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	138, 654
NciI	CCSGG	3 cut(s)	216, 217, 341
NdeII	GATC	3 cut(s)	142, 250, 556
NlaIII	CATG	2 cut(s)	531, 604
NlaIV	GGNNCC	2 cut(s)	450, 549
NmuCI	GTSAC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 483
PfeI	GAWTC	3 cut(s)	351, 877, 886
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	6 cut(s)	296, 299, 419, 433, 769, 859
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	450, 549
PspPI	GGNCC	2 cut(s)	10, 311
PstI	CTGCAG	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	177
SalI	GTCGAC	2 cut(s)	185, 269
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	6 cut(s)	295, 298, 418, 432, 768, 858
Sau3AI	GATC	3 cut(s)	142, 250, 556
Sau96I	GGNCC	2 cut(s)	10, 311
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	216, 217, 341, 375
SduI	GDGCHC	3 cut(s)	177, 234, 404
SfaNI	GCATC	1 cut(s)	886
SfcI	CTRYAG	1 cut(s)	881
SinI	GGWCC	2 cut(s)	10, 311
SmaI	CCCGGG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	66, 583, 627, 762, 816
SsiI	CCGC	2 cut(s)	99, 297
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	214, 215, 339, 373
TaaI	ACNGT	3 cut(s)	10, 86, 448
TaiI	ACGT	4 cut(s)	231, 276, 339, 480
TaqI	TCGA	5 cut(s)	186, 270, 318, 349, 555
TasI	AATT	5 cut(s)	66, 583, 627, 762, 816
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	351, 877, 886
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	5 cut(s)	294, 417, 431, 767, 857
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	3 cut(s)	294, 303, 341
TspMI	CCCGGG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	10, 311
XapI	RAATTY	1 cut(s)	66
XmaI	CCCGGG	1 cut(s)	215
XmiI	GTMKAC	3 cut(s)	186, 270, 480
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.