Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004230

Physical Location & Seq

Genomic Coordinates Forward (+)

1992494 .. 1993233

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGGGTTCAATGTTCATTTACCACTTCAACTATTATTCTCTTTTCTGCGCTGATTTTTCTAGCTTTCATTCATCGAGCGCAAGCAAGAGATCGTAAACCCGTCAATTGTTCTACTTCATGTGGAGAAGTCCAAAACATCAAATACCCTTTTCGTCTAAAGGGCAATCCATCTGGCTGCGGGGATCCTGACCATGAATTTTCTTGCGTGAACGGAAAAACCATCTTAGAAATTTTCCCGGGAAAATACTACGTGCACAACAGTTCATATGATGATCAAAACCTCCGTTTGATCGACGTCAACTTTGCCAACGGATCCTGCAGCCTTCCGTCTGGATCTGTCAAAACAGCGGACGGGAAAGTCATGGATTTTCGGTTCCGAGGAGCTGTAATCTATTATGCTAGTCATTTTCGATTCGTCAAGTGCTCCAAAAACATCAGCAGCCTGCCAACAGCTGCTAATTATCAAGGGTTCCATGTTTGGCCGCAACAAACGGGAGCTATTTCTATGCTGTTTATGTCCCCGAATTATCATCCGGACATGAAGTTCACTTCTTACAAAGCCGTCATGAAACTATTGCAGGCCGGGTTTGATATTGGATGGTCGGTTAAGTGCAGGGACTGCTCTTTGGCTAAGGGATGCGCAGTAAGTTCATGGGTTAAGCCACTTACCTACGAATGCTACACAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

231

Amino Acids

25.7

Weight (kDa)

9.1

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26480 FvH4_4g26500 FvH4_4g26500
malus_domestica	MD13G1033700.v1.1 MD13G1033800.v1.1 MD16G1035600.v1.1
prunus_persica	Prupe.1G319000_v2.0.a1 Prupe.1G319100_v2.0.a1
pyrus_communis	pycom13g02910 pycom13g02920 pycom16g03050
rosa_chinensis	RchiOBHm_Chr4g0434121 RchiOBHm_Chr4g0434131
rosa_laevigata	RLG00000006697 RLG00000006698
rosa_multiflora	Rmu_sc0000352.1_g000036
rosa_roxburghii	Rroxscaffold_5G00375520 Rroxscaffold_5G00375530
rosa_rugosa	Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500 Rorug04G0274500
rosa_samantha	Rh4AG329400 Rh4AG329500 Rh4BG336900 Rh4BG337000 Rh4CG352400 Rh4CG352500 Rh4DG333000 Rh4DG333100
rosa_wichuraiana	Rw4G028560 Rw4G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AatII	GACGTC	1 cut(s)	300
Acc16I	TGCGCA	1 cut(s)	643
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	3 cut(s)	180, 350, 485
AclWI	GGATC	5 cut(s)	179, 192, 309, 322, 343
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	197, 231
AcyI	GRCGYC	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	11, 30
AloI	GAACNNNNNNTCC	4 cut(s)	359, 391, 530, 562
AluBI	AGCT	4 cut(s)	65, 386, 455, 500
AluI	AGCT	4 cut(s)	65, 386, 455, 500
Alw21I	GWGCWC	2 cut(s)	258, 428
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	5 cut(s)	179, 192, 309, 322, 343
AlwNI	CAGNNNCTG	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	2 cut(s)	482, 582
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	4 cut(s)	177, 321, 441, 455
ApoI	RAATTY	2 cut(s)	197, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	3 cut(s)	52, 82, 644
AsuC2I	CCSGG	3 cut(s)	239, 240, 586
AvaI	CYCGRG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	258
BamHI	GGATCC	2 cut(s)	184, 314
Bbv12I	GWGCWC	2 cut(s)	258, 428
BbvI	GCAGC	4 cut(s)	164, 333, 442, 453
BccI	CCATC	3 cut(s)	178, 230, 594
BceAI	ACGGC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	3 cut(s)	239, 240, 586
BfaI	CTAG	2 cut(s)	62, 402
BfmI	CTRYAG	1 cut(s)	319
BisI	GCNGC	5 cut(s)	178, 322, 442, 456, 485
BlsI	GCNGC	5 cut(s)	179, 323, 443, 457, 486
Bme1390I	CCNGG	3 cut(s)	239, 240, 586
BmeT110I	CYCGRG	1 cut(s)	238
BmiI	GGNNCC	4 cut(s)	186, 316, 377, 473
BmrFI	CCNGG	3 cut(s)	239, 240, 586
BmsI	GCATC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	3 cut(s)	239, 240, 586
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	238, 379
BsaWI	WCCGGW	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	238, 379
BseGI	GGATG	3 cut(s)	532, 605, 644
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	164, 333, 442, 453
BsgI	GTGCAG	1 cut(s)	634
BshFI	GGCC	2 cut(s)	484, 584
BsiHKAI	GWGCWC	2 cut(s)	258, 428
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	239, 536, 585
BslFI	GGGAC	2 cut(s)	505, 632
BsmFI	GGGAC	2 cut(s)	505, 632
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	484, 584
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	258, 428
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
BspACI	CCGC	3 cut(s)	180, 350, 485
BspANI	GGCC	2 cut(s)	484, 584
BspEI	TCCGGA	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	4 cut(s)	186, 316, 377, 473
BspMAI	CTGCAG	1 cut(s)	323
BspPI	GGATC	5 cut(s)	179, 192, 309, 322, 343
BssECI	CCNNGG	2 cut(s)	238, 379
BssMI	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
BssNI	GRCGYC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	84, 446, 582
BstDEI	CTNAG	2 cut(s)	226, 633
BstF5I	GGATG	3 cut(s)	532, 605, 644
BstHHI	GCGC	3 cut(s)	52, 82, 644
BstKTI	GATC	6 cut(s)	94, 187, 277, 294, 317, 338
BstMBI	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	621
BstSCI	CCNGG	3 cut(s)	237, 238, 584
BstSFI	CTRYAG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	164, 333, 442, 453
BstX2I	RGATCY	3 cut(s)	184, 314, 335
BstYI	RGATCY	3 cut(s)	184, 314, 335
BsuRI	GGCC	2 cut(s)	484, 584
BtsCI	GGATG	3 cut(s)	532, 605, 644
Cac8I	GCNNGC	3 cut(s)	84, 446, 582
CaiI	CAGNNNCTG	1 cut(s)	621
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	3 cut(s)	52, 82, 644
Cfr9I	CCCGGG	1 cut(s)	238
CviAII	CATG	7 cut(s)	120, 194, 364, 476, 541, 568, 654
DdeI	CTNAG	2 cut(s)	226, 633
DpnI	GATC	6 cut(s)	93, 186, 276, 293, 316, 337
DpnII	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	238
FaeI	CATG	7 cut(s)	123, 197, 367, 479, 544, 571, 657
FaqI	GGGAC	2 cut(s)	505, 632
FatI	CATG	7 cut(s)	119, 193, 363, 475, 540, 567, 653
FauI	CCCGC	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	178, 322, 442, 456, 485
FokI	GGATG	3 cut(s)	519, 612, 651
Fsp4HI	GCNGC	5 cut(s)	178, 322, 442, 456, 485
FspBI	CTAG	2 cut(s)	62, 402
FspI	TGCGCA	1 cut(s)	643
GlaI	GCGC	3 cut(s)	51, 81, 643
GluI	GCNGC	5 cut(s)	178, 322, 442, 456, 485
HaeIII	GGCC	2 cut(s)	484, 584
HapII	CCGG	3 cut(s)	239, 536, 585
HhaI	GCGC	3 cut(s)	52, 82, 644
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	123, 197, 367, 479, 544, 571, 657
Hin6I	GCGC	3 cut(s)	50, 80, 642
HinP1I	GCGC	3 cut(s)	50, 80, 642
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	3 cut(s)	239, 536, 585
Hpy166II	GTNNAC	5 cut(s)	98, 211, 256, 301, 549
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	4 cut(s)	188, 333, 536, 568
Hpy8I	GTNNAC	5 cut(s)	98, 211, 256, 301, 549
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	2 cut(s)	252, 297
HpyCH4V	TGCA	4 cut(s)	256, 321, 580, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	621
HpyF3I	CTNAG	2 cut(s)	226, 633
HpySE526I	ACGT	2 cut(s)	252, 297
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	7 cut(s)	123, 197, 367, 479, 544, 571, 657
HspAI	GCGC	3 cut(s)	50, 80, 642
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
LmnI	GCTCC	3 cut(s)	383, 431, 497
Lsp1109I	GCAGC	4 cut(s)	164, 333, 442, 453
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	2 cut(s)	62, 402
MaeII	ACGT	2 cut(s)	252, 297
MalI	GATC	6 cut(s)	93, 186, 276, 293, 316, 337
MboI	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	3 cut(s)	184, 314, 335
MhlI	GDGCHC	2 cut(s)	258, 428
MluCI	AATT	5 cut(s)	106, 197, 231, 460, 526
MnlI	CCTC	2 cut(s)	293, 374
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	2 cut(s)	609, 660
MspA1I	CMGCKG	2 cut(s)	350, 455
MspI	CCGG	3 cut(s)	239, 536, 585
MspR9I	CCNGG	3 cut(s)	239, 240, 586
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	621
NciI	CCSGG	3 cut(s)	239, 240, 586
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
NlaIII	CATG	7 cut(s)	123, 197, 367, 479, 544, 571, 657
NlaIV	GGNNCC	4 cut(s)	186, 316, 377, 473
NsbI	TGCGCA	1 cut(s)	643
PagI	TCATGA	1 cut(s)	567
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	179, 323, 443, 457, 486
Ppu21I	YACGTR	1 cut(s)	253
PspN4I	GGNNCC	4 cut(s)	186, 316, 377, 473
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	621
PsuI	RGATCY	3 cut(s)	184, 314, 335
PvuII	CAGCTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	609, 660
SatI	GCNGC	5 cut(s)	178, 322, 442, 456, 485
Sau3AI	GATC	6 cut(s)	91, 184, 274, 291, 314, 335
ScrFI	CCNGG	3 cut(s)	239, 240, 586
SduI	GDGCHC	2 cut(s)	258, 428
SetI	ASST	9 cut(s)	67, 255, 285, 300, 388, 457, 502, 674, 691
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	240
Sse9I	AATT	5 cut(s)	106, 197, 231, 460, 526
SsiI	CCGC	3 cut(s)	180, 350, 485
SspMI	CTAG	2 cut(s)	62, 402
StyD4I	CCNGG	3 cut(s)	237, 238, 584
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	2 cut(s)	255, 300
TaqI	TCGA	3 cut(s)	76, 294, 412
TasI	AATT	5 cut(s)	106, 197, 231, 460, 526
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	609, 660
Tru9I	TTAA	2 cut(s)	609, 660
TseI	GCWGC	4 cut(s)	177, 321, 441, 455
TspDTI	ATGAA	9 cut(s)	6, 58, 62, 108, 210, 255, 557, 584, 642
TspGWI	ACGGA	4 cut(s)	228, 275, 318, 327
TspMI	CCCGGG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	197, 231
XmaI	CCCGGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	62, 402
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.