Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000426

Physical Location & Seq

Genomic Coordinates Forward (+)

4992390 .. 4992945

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGTTGGATGCTTACAAATGGGTGGAGTATAGGAATGCCTTTAAACCTAAACTGACCCCATGGCTGTATGTTGCTGAGCTTAGCTTTCTTGAAGCAGGAATTTTCCCATACAACGGTTTTAGTCTGGATCATATAGGGGGAACGAAGATTGGCGTGACAACGCGTGATGAACGGGGAAGAAGAAACACCTCAGCTGATTTTCTCGCGGCAGGGAATCCAAACTACATCACGCCTCTTTTGAGTGCAGCTGTATCGAGTGCCATCTTTCATAAGAAAGAGGCAGTAGCTAGAGGAATAAGATTCATCAAGAGCGACGGGAGCTCTTCGCAAACTTACGAAGCTTATCTCAACCCGCGGAAGAACTCAAGGAGTTCAACGGGCGATGTGATACTAGCTGCAGGGGCATTAGGCAGCCCTCAAATTTTACTGTCAAGTGGCATTGGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

151

Amino Acids

16.24

Weight (kDa)

9.56

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14185 AT1G14190 AT1G14190
fragaria_vesca	FvH4_4g31240
malus_domestica	MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica	Prupe.1G275800_v2.0.a1
pyrus_communis	pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis	RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata	RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora	Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii	Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa	Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha	Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana	Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	166, 209, 358
AciI	CCGC	3 cut(s)	209, 356, 358
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	102, 423
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	95, 378
AluBI	AGCT	8 cut(s)	82, 87, 197, 251, 290, 324, 344, 398
AluI	AGCT	8 cut(s)	82, 87, 197, 251, 290, 324, 344, 398
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	248, 398, 414
ApoI	RAATTY	2 cut(s)	102, 423
AspS9I	GGNCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	260, 385, 426
BccI	CCATC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BfaI	CTAG	2 cut(s)	291, 395
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	4 cut(s)	210, 249, 399, 415
BlpI	GCTNAGC	2 cut(s)	78, 83
BlsI	GCNGC	4 cut(s)	211, 250, 400, 416
BmgT120I	GGNCC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	193
Bpu1102I	GCTNAGC	2 cut(s)	78, 83
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	62, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	62, 356
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	69, 207
BseXI	GCAGC	3 cut(s)	260, 385, 426
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	3 cut(s)	166, 209, 358
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	130
Bsp1720I	GCTNAGC	2 cut(s)	78, 83
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	3 cut(s)	209, 356, 358
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	70, 206
BspFNI	CGCG	3 cut(s)	166, 209, 358
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	62, 356
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	119, 432
Bst6I	CTCTTC	1 cut(s)	331
BstDEI	CTNAG	4 cut(s)	78, 83, 193, 450
BstDSI	CCRYGG	2 cut(s)	62, 356
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	3 cut(s)	166, 209, 358
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 404
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	3 cut(s)	166, 209, 358
BstV1I	GCAGC	3 cut(s)	260, 385, 426
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	62, 356
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	446
Cfr42I	CCGCGG	1 cut(s)	359
CviAII	CATG	1 cut(s)	63
DdeI	CTNAG	4 cut(s)	78, 83, 193, 450
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	66
FaiI	YATR	7 cut(s)	33, 64, 72, 112, 135, 137, 273
FatI	CATG	1 cut(s)	62
FauI	CCCGC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	210, 249, 399, 415
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	4 cut(s)	210, 249, 399, 415
FspBI	CTAG	2 cut(s)	291, 395
GluI	GCNGC	4 cut(s)	210, 249, 399, 415
HaeIII	GGCC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	2 cut(s)	217, 303
Hpy188III	TCNNGA	3 cut(s)	92, 128, 310
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	119, 432
HpyCH4V	TGCA	2 cut(s)	248, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 404
HpyF3I	CTNAG	4 cut(s)	78, 83, 193, 450
Hsp92II	CATG	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	4 cut(s)	84, 113, 198, 387
Lsp1109I	GCAGC	3 cut(s)	260, 385, 426
MaeI	CTAG	2 cut(s)	291, 395
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	5 cut(s)	160, 192, 195, 318, 373
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	2 cut(s)	102, 423
MluI	ACGCGT	1 cut(s)	164
MnlI	CCTC	5 cut(s)	202, 246, 274, 287, 429
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	3 cut(s)	197, 251, 358
Mva1269I	GAATGC	1 cut(s)	43
MvnI	CGCG	3 cut(s)	166, 209, 358
MwoI	GCNNNNNNNGC	2 cut(s)	321, 404
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	217, 303
PkrI	GCNGC	4 cut(s)	211, 250, 400, 416
Psp124BI	GAGCTC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	403
PvuII	CAGCTG	2 cut(s)	197, 251
SacI	GAGCTC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	210, 249, 399, 415
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	399
Sfr303I	CCGCGG	1 cut(s)	359
SgrBI	CCGCGG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	2 cut(s)	102, 423
SsiI	CCGC	3 cut(s)	209, 356, 358
SspMI	CTAG	2 cut(s)	291, 395
SstI	GAGCTC	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	119, 432
TaqI	TCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	102, 423
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	217, 303
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	248, 398, 414
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	186, 260, 295
XapI	RAATTY	2 cut(s)	102, 423
XspI	CTAG	2 cut(s)	291, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.