Rorug04G0320400

GMC oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
49419575 .. 49421090
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0320400.1

Sequence Viewer

Length: 963 bp
ATGCACTCAATGGAGTACCATATATGCTTTGGTCGAAGCTACTTTCGTTCCTCTCCCATGGATGCTATTATTTTTCACCTTCTTCTTCTTCTTACATGTTTCCTCACCCACCCAATTGCTCCGGTAGCTCATAAAGCAACAACACCAACCGCTCGGATCACCGTCGTGGGAGCGGTTTATTGTGATACTTGTTCAAGCAACATATTCTCAAGAAGCAGCTACTTTCTCCCAGGTGTGGATGTTGTGATACAATGCAAGTTCAGAGGGAACTCGGCCAAAGCCTCAGAGGATATGAATTTCTCAGTTAACAAAACCACAAACAAGTATGGAGTTTACAAACTGGAAATACCTTCTGTTGATGGGGTCAACTGCTTAAGTGGTGTGTCAATTAAGTCAATGTGCCAAGCAAGTTTGATATGGAGCTCATCCAAAAGTTGCAATGTTCCTGGTTTAAGAACCACAGCAGATGAGATTTCAGTCAAGTCAAAACAAGATAACCTCTGTATTTACAGCATGAATGCCTTGAGTTACAGGCCACCAAAGAAGAATCTTACCCTATGTGGAAATAGGAAGGAAGAGGAATTGGCAAGTTCTTTCAATTCCTCCAAGTTTTTTCTCCCATACTTTCCATCATTCTATCGATTCCCATGGCCTCCTTTGCCTCAATTCCCTTTCCCTCCTCTTCCACCTCTACCATCCTTGCCCCCATTTCCATCTTTTCCATTCCCTCCATCTTTGCCTTTCCCATTTCCAAGTCTACCTCCTTTTCCATCCCCAAATCCTCTTGCCCCAAACACTCCACCTCCATTTAATTTAGGAGACCCAAGAACTTGGATACCTTATATCCCTTCTGTCTTTCCTCCACCTCCTCCCCCACCAGGATTCAATCTCAGAGACCCCAGAACCTGGATACCATATATTCCTCCATCCCCTCCCAATAGGCCTCAAAACCAGAACCCATAG

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

9.22

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 55 - 150 8.1e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14185 AT1G14190 AT1G14190
fragaria_vesca FvH4_4g31240
malus_domestica MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica Prupe.1G275800_v2.0.a1
pyrus_communis pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 906
AccBSI CCGCTC 2 cut(s) 152, 173
AccI GTMKAC 1 cut(s) 757
AciI CCGC 2 cut(s) 150, 173
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 3 cut(s) 235, 878, 906
AflII CTTAAG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 3 cut(s) 195, 598, 886
AjnI CCWGG 4 cut(s) 229, 445, 877, 905
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 4 cut(s) 39, 128, 219, 423
AluI AGCT 4 cut(s) 39, 128, 219, 423
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 2 cut(s) 813, 888
AlwI GGATC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 906
AoxI GGCC 4 cut(s) 273, 533, 650, 941
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 295
AsuHPI GGTGA 3 cut(s) 68, 97, 151
BanII GRGCYC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 228
BccI CCATC 7 cut(s) 353, 637, 703, 721, 739, 778, 934
BciT130I CCWGG 4 cut(s) 231, 447, 879, 907
BciVI GTATCC 2 cut(s) 828, 903
BcoDI GTCTC 2 cut(s) 813, 888
BfrI CTTAAG 1 cut(s) 373
BfuI GTATCC 2 cut(s) 828, 903
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 4 cut(s) 231, 447, 879, 907
BmrFI CCNGG 4 cut(s) 231, 447, 879, 907
BmsI GCATC 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 193, 544
Bsa29I ATCGAT 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 813, 888
BsaJI CCNNGG 3 cut(s) 57, 229, 647
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 878, 906
Bse1I ACTGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 4 cut(s) 231, 447, 879, 907
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 3 cut(s) 57, 229, 647
BseGI GGATG 6 cut(s) 67, 244, 425, 695, 770, 926
BseLI CCNNNNNNNGG 3 cut(s) 235, 878, 906
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 3 cut(s) 297, 315, 904
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 2 cut(s) 669, 858
BseXI GCAGC 1 cut(s) 228
BshFI GGCC 4 cut(s) 275, 535, 652, 943
BshVI ATCGAT 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 425
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 235, 878, 906
BsmAI GTCTC 2 cut(s) 813, 888
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 4 cut(s) 275, 535, 652, 943
Bso31I GGTCTC 2 cut(s) 813, 888
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 1 cut(s) 156
Bsp19I CCATGG 2 cut(s) 57, 647
BspACI CCGC 2 cut(s) 150, 173
BspANI GGCC 4 cut(s) 275, 535, 652, 943
BspCNI CTCAG 3 cut(s) 296, 314, 903
BspDI ATCGAT 1 cut(s) 640
BspPI GGATC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 373
BspTNI GGTCTC 2 cut(s) 813, 888
BsrBI CCGCTC 2 cut(s) 152, 173
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 3 cut(s) 57, 229, 647
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 57, 647
Bst2UI CCWGG 4 cut(s) 231, 447, 879, 907
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 570, 687
BstAFI CTTAAG 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 283, 301, 890
BstDSI CCRYGG 2 cut(s) 57, 647
BstF5I GGATG 6 cut(s) 67, 244, 425, 695, 770, 926
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 813, 888
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 125, 134, 658
BstNI CCWGG 4 cut(s) 231, 447, 879, 907
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 4 cut(s) 229, 445, 877, 905
BstV1I GCAGC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 831
Bsu15I ATCGAT 1 cut(s) 640
BsuI GTATCC 2 cut(s) 828, 903
BsuRI GGCC 4 cut(s) 275, 535, 652, 943
BsuTUI ATCGAT 1 cut(s) 640
BtgI CCRYGG 2 cut(s) 57, 647
BtsCI GGATG 6 cut(s) 67, 244, 425, 695, 770, 926
CaiI CAGNNNCTG 1 cut(s) 906
ClaI ATCGAT 1 cut(s) 640
Csp6I GTAC 1 cut(s) 16
CviAII CATG 4 cut(s) 58, 96, 514, 648
CviJI RGCY 9 cut(s) 39, 128, 219, 275, 281, 423, 535, 652, 943
CviKI_1 RGCY 9 cut(s) 39, 128, 219, 275, 281, 423, 535, 652, 943
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 283, 301, 890
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 570, 687
EarI CTCTTC 2 cut(s) 570, 687
Ecl136II GAGCTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 57, 647
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 425
Eco31I GGTCTC 2 cut(s) 813, 888
Eco53kI GAGCTC 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 423
EcoRII CCWGG 4 cut(s) 229, 445, 877, 905
EcoT14I CCWWGG 2 cut(s) 57, 647
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 57, 647
FaeI CATG 4 cut(s) 61, 99, 517, 651
FatI CATG 4 cut(s) 57, 95, 513, 647
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 6 cut(s) 74, 251, 412, 682, 757, 913
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 4 cut(s) 275, 535, 652, 943
HapII CCGG 1 cut(s) 122
Hin1II CATG 4 cut(s) 61, 99, 517, 651
HincII GTYRAC 2 cut(s) 307, 367
HindII GTYRAC 2 cut(s) 307, 367
HinfI GANTC 3 cut(s) 547, 642, 882
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 122
HphI GGTGA 3 cut(s) 68, 97, 151
Hpy166II GTNNAC 4 cut(s) 307, 334, 367, 758
Hpy188I TCNGA 4 cut(s) 156, 263, 286, 893
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 4 cut(s) 307, 334, 367, 758
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 4 cut(s) 89, 360, 565, 858
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 4, 255, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 134, 658
HpyF3I CTNAG 3 cut(s) 283, 301, 890
Hsp92II CATG 4 cut(s) 61, 99, 517, 651
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 3 cut(s) 124, 170, 420
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 158
MbiI CCGCTC 2 cut(s) 152, 173
MboI GATC 1 cut(s) 156
MboII GAAGA 6 cut(s) 74, 77, 80, 556, 587, 674
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 7 cut(s) 114, 295, 387, 581, 598, 665, 811
MseI TTAA 5 cut(s) 306, 374, 390, 452, 810
MslI CAYNNNNRTG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 373
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 4 cut(s) 231, 447, 879, 907
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 4 cut(s) 231, 447, 879, 907
MwoI GCNNNNNNNGC 3 cut(s) 125, 134, 658
NcoI CCATGG 2 cut(s) 57, 647
NdeII GATC 1 cut(s) 156
NlaIII CATG 4 cut(s) 61, 99, 517, 651
NmeAIII GCCGAG 1 cut(s) 251
NspI RCATGY 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 164
PceI AGGCCT 1 cut(s) 943
PciI ACATGT 1 cut(s) 95
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 547, 642, 882
PflMI CCANNNNNTGG 1 cut(s) 906
PkrI GCNGC 1 cut(s) 218
PscI ACATGT 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 425
Psp6I CCWGG 4 cut(s) 229, 445, 877, 905
PspGI CCWGG 4 cut(s) 229, 445, 877, 905
PstNI CAGNNNCTG 1 cut(s) 906
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 425
SaqAI TTAA 5 cut(s) 306, 374, 390, 452, 810
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 4 cut(s) 231, 447, 879, 907
SduI GDGCHC 1 cut(s) 425
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 208, 373, 523
SmoI CTYRAG 3 cut(s) 208, 373, 523
Sse9I AATT 7 cut(s) 114, 295, 387, 581, 598, 665, 811
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 2 cut(s) 150, 173
SstI GAGCTC 1 cut(s) 425
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 4 cut(s) 229, 445, 877, 905
StyI CCWWGG 2 cut(s) 57, 647
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 34, 640
TasI AATT 7 cut(s) 114, 295, 387, 581, 598, 665, 811
TfiI GAWTC 3 cut(s) 547, 642, 882
Tru1I TTAA 5 cut(s) 306, 374, 390, 452, 810
Tru9I TTAA 5 cut(s) 306, 374, 390, 452, 810
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 308, 530
Van91I CCANNNNNTGG 1 cut(s) 906
Vha464I CTTAAG 1 cut(s) 373
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.