MD16G1071700.v1.1

GMC oxidoreductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
5035553 .. 5037541
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1071700.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGAGCGTTTTATTCCATCTATTCCTCCTATTTGTAAGCTTGGTTTTGTGTTCTTCATGGATTCAAGGGCAAACACTCCCCCATATAACTTCAGATGTCAATGAAGCTTCGGGCAAGTCCTTCGATTACATTGTCATTGGAGGAGGCACTGCCGGCTGTCCCCTAGCTGCAACCCTGTCTGAGAAATTCTCAGTGCTCTTGGTGGAACGAGGCGGCTCTCCATATGGAGATCCCTTGGTGCTGGATACAAAGTACTATGGGTTCTCATTGCTCCGAACTGATCAATATACATCAGTTGCACAAAGCTTTGTGTCCAACGACGGTGTGAGAAATCTCAGAGGCAGAGTTCTAGGAGGAGGATCTGCTATAAATGGCGGGTTTTACAGCAGAGCAAGTGAGGATTTTGTCGAAAAGGTTGGGTGGGATAAGGAGATGGTAACAAATGCTTATCAATGGGTCGAATCTAGAATCGTTTTTAAACCCGAACTGACCCCATGGCAGTATGCTGCTGAGTTTAGCTTTCTTGAGGCAGGGGTTTTCCCTTACAATGGTTTTAGTTTGGATCACATTGAGGGAACAAAGATCGGTGCGAGCGTGTTTGATGAACAGGGACGAAGACACACCTCCGCTGATCTTCTTGAGGCAGGAAATCCAAACCATATCACAGTTCTTCTGAATGCAACTGTTACTAATGTCATCTTTCATGAAAGAGGTGACAGAAATGAGACAATGGCTAGAGGCATAAGATTCATCAAGAGCAACGGAAACTCAAGCGAAATTTATGAAGCTCACCTCAACCAGCCAGAGAATTCATGCTCAGGGGGTGATGTGATACTAGCAGCAGGGGCCTTAGGCAGCCCTCAGATTCTATTGTTAAGTGGTATTGGCCCTCATCAACACCTAAACAACTTCAACATCCAACTAGTTCTCGACCTAGAGGCTGTCGGAAAAGGAATGAAAGACAATCCTGGCATTGCACTCTTAGCTGACCCTACCCCGAAAAATTTCCCACCAGAACCTCCAAAAGTTGTCGGTATAGCAGATGACTTCAAGATCATAATTGAGGCAGGAATTTTACCTGTCAGCTCCAATGCAACAATAATGCCAATAGCTGCGAAACTCGCCTTTCCAGAATCAGAAGGAAAGCTTGAGCTGAACAGCACTGACCCCAGAGAAAACCCTTCAGTCACATTCAACTATCTAGCAAAGGAGAAAGATTTGGCACAATGTTTGAAGCTGGCTCAGTTGCTTGAGCGAGTGGTAAGGTCTGAATCGATTGCATTCTTCCTGGGGATCGAACGCAAGCCAAAAGACAAGTTGATGTCTACGGAAGATGAGTTGAGAAAACTTTGCACGAAGAATGTGATTACATTCTTTCACTACCATGGAGGTTGCACCATGGGATCAGTGGTTGACAAGGATTACAGGGTTTACGGAGTTAAGGGACTCAGAGTAGTTGATGGATCAACATTTTTCGAATCACCAGGTACAAATCCAATGGCCACTTTGTTAATGCTTGGAAGATACCAAGGGATGAAGGTTCTTCAAGAAAGAGAAAATGCTTAA

Protein Analysis

522

Amino Acids

56.99

Weight (kDa)

5.57

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 41 - 322 1.7e-16 GMC oxidoreductase
GMC_oxred_C PF05199 377 - 507 7e-31 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14185 AT1G14190 AT1G14190
fragaria_vesca FvH4_4g31240
malus_domestica MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica Prupe.1G275800_v2.0.a1
pyrus_communis pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1325
AciI CCGC 3 cut(s) 213, 375, 627
AclWI GGATC 6 cut(s) 224, 367, 570, 1301, 1411, 1471
AcoI YGGCCR 1 cut(s) 1500
AcsI RAATTY 5 cut(s) 185, 777, 808, 1003, 1071
AcuI CTGAAG 2 cut(s) 75, 1167
AfaI GTAC 2 cut(s) 254, 1489
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 6 cut(s) 65, 913, 1051, 1195, 1234, 1547
AhlI ACTAGT 1 cut(s) 922
AjnI CCWGG 3 cut(s) 967, 1287, 1483
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 6 cut(s) 224, 367, 570, 1301, 1411, 1471
AoxI GGCC 3 cut(s) 846, 886, 1500
ApeKI GCWGC 5 cut(s) 167, 506, 839, 855, 1112
ApoI RAATTY 5 cut(s) 185, 777, 808, 1003, 1071
Asp700I GAANNNNTTC 1 cut(s) 1004
AspS9I GGNCC 2 cut(s) 846, 887
AsuHPI GGTGA 4 cut(s) 725, 782, 836, 1473
AsuII TTCGAA 1 cut(s) 1476
AxyI CCTNAGG 1 cut(s) 850
BalI TGGCCA 1 cut(s) 1502
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 5 cut(s) 154, 493, 851, 867, 1099
BccI CCATC 3 cut(s) 24, 427, 1454
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 969, 1289, 1485
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 719
BcuI ACTAGT 1 cut(s) 922
BfaI CTAG 8 cut(s) 164, 350, 465, 735, 836, 923, 935, 1202
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 6 cut(s) 168, 214, 507, 840, 856, 1113
BlsI GCNGC 6 cut(s) 169, 215, 508, 841, 857, 1114
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 3 cut(s) 969, 1289, 1485
BmgT120I GGNCC 2 cut(s) 846, 887
BmiI GGNNCC 1 cut(s) 847
BmrFI CCNGG 3 cut(s) 969, 1289, 1485
BpiI GAAGAC 1 cut(s) 622
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu10I CCTNAGC 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 1476
BpuEI CTTGAG 5 cut(s) 545, 659, 754, 1169, 1271
Bsa29I ATCGAT 1 cut(s) 1274
BsaJI CCNNGG 6 cut(s) 234, 494, 1288, 1384, 1398, 1528
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse118I RCCGGY 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 850
Bse3DI GCAATG 2 cut(s) 266, 972
BseBI CCWGG 3 cut(s) 969, 1289, 1485
BseCI ATCGAT 1 cut(s) 1274
BseDI CCNNGG 6 cut(s) 234, 494, 1288, 1384, 1398, 1528
BseGI GGATG 2 cut(s) 915, 1539
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMI GCAATG 2 cut(s) 266, 972
BseMII CTCAG 8 cut(s) 171, 204, 349, 501, 831, 875, 1256, 1462
BseRI GAGGAG 2 cut(s) 156, 369
BseXI GCAGC 5 cut(s) 154, 493, 851, 867, 1099
BshFI GGCC 3 cut(s) 848, 888, 1502
BshVI ATCGAT 1 cut(s) 1274
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 3 cut(s) 144, 624, 1458
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 719
BsmFI GGGAC 3 cut(s) 144, 624, 1458
BsmI GAATGC 2 cut(s) 682, 1280
BsnI GGCC 3 cut(s) 848, 888, 1502
Bsp119I TTCGAA 1 cut(s) 1476
Bsp1286I GDGCHC 1 cut(s) 198
Bsp19I CCATGG 3 cut(s) 494, 1384, 1398
BspACI CCGC 3 cut(s) 213, 375, 627
BspANI GGCC 3 cut(s) 848, 888, 1502
BspCNI CTCAG 8 cut(s) 172, 203, 348, 502, 830, 874, 1255, 1461
BspDI ATCGAT 1 cut(s) 1274
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 847
BspPI GGATC 6 cut(s) 224, 367, 570, 1301, 1411, 1471
BspT104I TTCGAA 1 cut(s) 1476
BsrDI GCAATG 2 cut(s) 266, 972
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 234, 494, 1288, 1384, 1398, 1528
BssT1I CCWWGG 5 cut(s) 234, 494, 1384, 1398, 1528
Bst2UI CCWGG 3 cut(s) 969, 1289, 1485
Bst4CI ACNGT 3 cut(s) 323, 667, 685
BstBI TTCGAA 1 cut(s) 1476
BstC8I GCNNGC 4 cut(s) 154, 592, 1239, 1304
BstDSI CCRYGG 3 cut(s) 494, 1384, 1398
BstF5I GGATG 2 cut(s) 915, 1539
BstMAI GTCTC 1 cut(s) 719
BstMWI GCNNNNNNNGC 4 cut(s) 153, 845, 983, 1121
BstNI CCWGG 3 cut(s) 969, 1289, 1485
BstSCI CCNGG 3 cut(s) 967, 1287, 1483
BstV1I GCAGC 5 cut(s) 154, 493, 851, 867, 1099
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 2 cut(s) 229, 359
BstYI RGATCY 2 cut(s) 229, 359
Bsu15I ATCGAT 1 cut(s) 1274
Bsu36I CCTNAGG 1 cut(s) 850
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 848, 888, 1502
BsuTUI ATCGAT 1 cut(s) 1274
BtgI CCRYGG 3 cut(s) 494, 1384, 1398
BtsCI GGATG 2 cut(s) 915, 1539
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 4 cut(s) 147, 198, 1161, 1413
Cac8I GCNNGC 4 cut(s) 154, 592, 1239, 1304
CciI TCATGA 1 cut(s) 703
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 846, 887
ClaI ATCGAT 1 cut(s) 1274
CsiI ACCWGGT 1 cut(s) 1483
Csp6I GTAC 2 cut(s) 253, 1488
CviAII CATG 6 cut(s) 57, 495, 704, 813, 1385, 1399
CviQI GTAC 2 cut(s) 253, 1488
DraI TTTAAA 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 1500
Eco130I CCWWGG 5 cut(s) 234, 494, 1384, 1398, 1528
Eco57I CTGAAG 2 cut(s) 75, 1167
Eco81I CCTNAGG 1 cut(s) 850
EcoO109I RGGNCCY 1 cut(s) 846
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 3 cut(s) 967, 1287, 1483
EcoT14I CCWWGG 5 cut(s) 234, 494, 1384, 1398, 1528
ErhI CCWWGG 5 cut(s) 234, 494, 1384, 1398, 1528
FaeI CATG 6 cut(s) 60, 498, 707, 816, 1388, 1402
FalI AAGNNNNNCTT 2 cut(s) 1131, 1163
FaqI GGGAC 3 cut(s) 144, 624, 1458
FatI CATG 6 cut(s) 56, 494, 703, 812, 1384, 1398
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 1325
Fnu4HI GCNGC 6 cut(s) 168, 214, 507, 840, 856, 1113
FokI GGATG 2 cut(s) 902, 1546
Fsp4HI GCNGC 6 cut(s) 168, 214, 507, 840, 856, 1113
FspBI CTAG 8 cut(s) 164, 350, 465, 735, 836, 923, 935, 1202
GluI GCNGC 6 cut(s) 168, 214, 507, 840, 856, 1113
HaeIII GGCC 3 cut(s) 848, 888, 1502
HapII CCGG 1 cut(s) 153
Hin1II CATG 6 cut(s) 60, 498, 707, 816, 1388, 1402
HincII GTYRAC 1 cut(s) 1414
HindII GTYRAC 1 cut(s) 1414
HindIII AAGCTT 4 cut(s) 37, 105, 304, 1145
HinfI GANTC 9 cut(s) 61, 461, 468, 747, 865, 1133, 1271, 1446, 1478
HpaII CCGG 1 cut(s) 153
HphI GGTGA 4 cut(s) 725, 782, 836, 1473
Hpy166II GTNNAC 3 cut(s) 1326, 1414, 1432
Hpy188III TCNNGA 9 cut(s) 465, 524, 638, 704, 754, 929, 1051, 1130, 1547
Hpy8I GTNNAC 3 cut(s) 1326, 1414, 1432
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 130, 1133, 1191, 1531
HpyCH4III ACNGT 3 cut(s) 323, 667, 685
HpyCH4V TGCA 8 cut(s) 170, 299, 680, 977, 1094, 1280, 1353, 1395
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 845, 983, 1121
Hsp92II CATG 6 cut(s) 60, 498, 707, 816, 1388, 1402
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 280
LmnI GCTCC 2 cut(s) 276, 1091
Lsp1109I GCAGC 5 cut(s) 154, 493, 851, 867, 1099
MabI ACCWGGT 1 cut(s) 1483
MaeI CTAG 8 cut(s) 164, 350, 465, 735, 836, 923, 935, 1202
MaeIII GTNAC 4 cut(s) 436, 685, 713, 1186
MboII GAAGA 9 cut(s) 45, 626, 627, 662, 1276, 1343, 1369, 1533, 1535
MflI RGATCY 2 cut(s) 229, 359
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 1502
MluCI AATT 6 cut(s) 185, 777, 808, 1003, 1059, 1071
MluNI TGGCCA 1 cut(s) 1502
MlyI GAGTC 1 cut(s) 1440
MmeI TCCRAC 3 cut(s) 339, 925, 943
Mox20I TGGCCA 1 cut(s) 1502
MroNI GCCGGC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1502
MseI TTAA 5 cut(s) 477, 875, 1440, 1511, 1564
MslI CAYNNNNRTG 1 cut(s) 1383
Msp20I TGGCCA 1 cut(s) 1502
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 969, 1289, 1485
Mva1269I GAATGC 2 cut(s) 682, 1280
MvaI CCWGG 3 cut(s) 969, 1289, 1485
MwoI GCNNNNNNNGC 4 cut(s) 153, 845, 983, 1121
NaeI GCCGGC 1 cut(s) 154
NcoI CCATGG 3 cut(s) 494, 1384, 1398
NdeI CATATG 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 6 cut(s) 60, 498, 707, 816, 1388, 1402
NlaIV GGNNCC 1 cut(s) 847
NmuCI GTSAC 2 cut(s) 713, 1186
NspV TTCGAA 1 cut(s) 1476
PagI TCATGA 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 2 cut(s) 682, 1280
PdiI GCCGGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 1004
PfeI GAWTC 8 cut(s) 61, 461, 468, 747, 865, 1133, 1271, 1478
PkrI GCNGC 6 cut(s) 169, 215, 508, 841, 857, 1114
PleI GAGTC 1 cut(s) 1440
PpsI GAGTC 1 cut(s) 1440
Psp6I CCWGG 3 cut(s) 967, 1287, 1483
PspGI CCWGG 3 cut(s) 967, 1287, 1483
PspN4I GGNNCC 1 cut(s) 847
PspPI GGNCC 2 cut(s) 846, 887
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
PsuI RGATCY 2 cut(s) 229, 359
RsaI GTAC 2 cut(s) 254, 1489
RsaNI GTAC 2 cut(s) 253, 1488
RseI CAYNNNNRTG 1 cut(s) 1383
SaqAI TTAA 5 cut(s) 477, 875, 1440, 1511, 1564
SatI GCNGC 6 cut(s) 168, 214, 507, 840, 856, 1113
Sau96I GGNCC 2 cut(s) 846, 887
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 1440
ScrFI CCNGG 3 cut(s) 969, 1289, 1485
SduI GDGCHC 1 cut(s) 198
SexAI ACCWGGT 1 cut(s) 1483
SfuI TTCGAA 1 cut(s) 1476
SmiMI CAYNNNNRTG 1 cut(s) 1383
SmlI CTYRAG 5 cut(s) 524, 638, 769, 1148, 1250
SmoI CTYRAG 5 cut(s) 524, 638, 769, 1148, 1250
SpeI ACTAGT 1 cut(s) 922
Sse9I AATT 6 cut(s) 185, 777, 808, 1003, 1059, 1071
SsiI CCGC 3 cut(s) 213, 375, 627
SspMI CTAG 8 cut(s) 164, 350, 465, 735, 836, 923, 935, 1202
StyD4I CCNGG 3 cut(s) 967, 1287, 1483
StyI CCWWGG 5 cut(s) 234, 494, 1384, 1398, 1528
TaaI ACNGT 3 cut(s) 323, 667, 685
TaqI TCGA 7 cut(s) 123, 408, 459, 930, 1274, 1296, 1476
TasI AATT 6 cut(s) 185, 777, 808, 1003, 1059, 1071
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 8 cut(s) 61, 461, 468, 747, 865, 1133, 1271, 1478
Tru1I TTAA 5 cut(s) 477, 875, 1440, 1511, 1564
Tru9I TTAA 5 cut(s) 477, 875, 1440, 1511, 1564
TscAI CASTG 4 cut(s) 154, 198, 1168, 1413
TseFI GTSAC 2 cut(s) 713, 1186
TseI GCWGC 5 cut(s) 167, 506, 839, 855, 1112
Tsp45I GTSAC 2 cut(s) 713, 1186
TspGWI ACGGA 3 cut(s) 777, 1343, 1449
TspRI CASTG 4 cut(s) 154, 198, 1168, 1413
XapI RAATTY 5 cut(s) 185, 777, 808, 1003, 1071
XbaI TCTAGA 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 1405
XmiI GTMKAC 1 cut(s) 1325
XmnI GAANNNNTTC 1 cut(s) 1004
XspI CTAG 8 cut(s) 164, 350, 465, 735, 836, 923, 935, 1202
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.