Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382505.1

Orthogroup ID

OG0000426

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 596

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 595 bp

atgacttcaaaagtcgaagaagtagccggtaggtccttcgactacattgtggttggtggaggcactgcgggctgccccctagctgcaaccttgtctgagaaattctcagtgctgttggtggaacgaggtggctcgccttacggggaccccttcatcttagagttgaagtactacggatattcatatctcgtaactgatgaatatacatcagctgcacaaagctttgtctcgacagatggtgttcccaatttcagaggaagagtgctaggaggatcatccgctatcaatggtgggttttacggcagagcaagcaaggattttgtcaaaaaggttggttgggataatgagggagtaagggatgcttatgaatgggtggaatctagaatcatctctaaacctgatcatttgactccgtggtctcatgctgttgcgttaagctttgttgaagctggaattctcccctataatggtttcagtttggagcatattcagggaacaaaaattggtgctactttgttcgataaccagggaagaagacacttaccagctgatcttctaccggcaggaaatccaagcaagatcacagttctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

198

Amino Acids

21.39

Weight (kDa)

5.8

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14185 AT1G14190 AT1G14190
fragaria_vesca	FvH4_4g31240
malus_domestica	MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica	Prupe.1G275800_v2.0.a1
pyrus_communis	pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis	RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata	RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora	Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii	Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa	Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha	Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana	Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AciI	CCGC	2 cut(s)	68, 279
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	101, 453
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	9, 166, 446
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	6 cut(s)	83, 212, 222, 438, 449, 548
AluI	AGCT	6 cut(s)	83, 212, 222, 438, 449, 548
Alw26I	GTCTC	2 cut(s)	232, 423
AlwI	GGATC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	72, 83, 212
ApoI	RAATTY	2 cut(s)	101, 453
AspS9I	GGNCC	2 cut(s)	33, 145
AvaII	GGWCC	2 cut(s)	33, 145
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	59, 70, 199
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	232, 423
BfaI	CTAG	3 cut(s)	80, 266, 381
BisI	GCNGC	3 cut(s)	73, 84, 213
BlsI	GCNGC	3 cut(s)	74, 85, 214
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	2 cut(s)	33, 145
BmgT120I	GGNCC	2 cut(s)	33, 145
BmiI	GGNNCC	2 cut(s)	146, 147
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	541
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	413, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	2 cut(s)	26, 559
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	413, 526
BseGI	GGATG	2 cut(s)	275, 364
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	87, 120
BseXI	GCAGC	3 cut(s)	59, 70, 199
BsgI	GTGCAG	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	27, 560
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	232, 423
BsmFI	GGGAC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	272, 400, 550, 579
BspACI	CCGC	2 cut(s)	68, 279
BspCNI	CTCAG	2 cut(s)	88, 119
BspLI	GGNNCC	2 cut(s)	146, 147
BspPI	GGATC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	26, 559
BssAI	RCCGGY	2 cut(s)	26, 559
BssECI	CCNNGG	2 cut(s)	413, 526
BssMI	GATC	4 cut(s)	272, 400, 550, 579
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	70, 134, 310
BstDEI	CTNAG	3 cut(s)	96, 106, 157
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	275, 364
BstKTI	GATC	4 cut(s)	275, 403, 553, 582
BstMAI	GTCTC	2 cut(s)	232, 423
BstMBI	GATC	4 cut(s)	272, 400, 550, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 309
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	59, 70, 199
BstV2I	GAAGAC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	275, 364
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 114
Cac8I	GCNNGC	3 cut(s)	70, 134, 310
Cfr10I	RCCGGY	2 cut(s)	26, 559
Cfr13I	GGNCC	2 cut(s)	33, 145
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	9 cut(s)	26, 72, 83, 132, 212, 222, 438, 449, 548
CviKI_1	RGCY	9 cut(s)	26, 72, 83, 132, 212, 222, 438, 449, 548
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	96, 106, 157
DpnI	GATC	4 cut(s)	274, 402, 552, 581
DpnII	GATC	4 cut(s)	272, 400, 550, 579
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	33, 145
EcoO109I	RGGNCCY	2 cut(s)	33, 145
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	425
FaiI	YATR	6 cut(s)	184, 204, 366, 423, 465, 486
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	421
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	73, 84, 213
FokI	GGATG	2 cut(s)	262, 371
Fsp4HI	GCNGC	3 cut(s)	73, 84, 213
FspBI	CTAG	3 cut(s)	80, 266, 381
GluI	GCNGC	3 cut(s)	73, 84, 213
HapII	CCGG	2 cut(s)	27, 560
Hin1II	CATG	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	220, 436
HinfI	GANTC	3 cut(s)	377, 384, 409
HpaII	CCGG	2 cut(s)	27, 560
Hpy188I	TCNGA	2 cut(s)	97, 254
Hpy188III	TCNNGA	3 cut(s)	229, 381, 592
HpyAV	CCTTC	2 cut(s)	46, 160
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	2 cut(s)	86, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 309
HpyF3I	CTNAG	3 cut(s)	96, 106, 157
Hsp92II	CATG	1 cut(s)	425
KflI	GGGWCCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	272, 400, 550, 579
LmnI	GCTCC	1 cut(s)	481
LpnPI	CCDG	9 cut(s)	40, 411, 435, 476, 512, 539, 549, 558, 573
Lsp1109I	GCAGC	3 cut(s)	59, 70, 199
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	3 cut(s)	80, 266, 381
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	274, 402, 552, 581
MboI	GATC	4 cut(s)	272, 400, 550, 579
MboII	GAAGA	5 cut(s)	29, 270, 543, 545, 546
MluCI	AATT	4 cut(s)	101, 247, 453, 501
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	5 cut(s)	53, 119, 248, 263, 340
MseI	TTAA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	212, 548
MspI	CCGG	2 cut(s)	27, 560
MspR9I	CCNGG	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	69, 309
NdeII	GATC	4 cut(s)	272, 400, 550, 579
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	2 cut(s)	146, 147
PfeI	GAWTC	2 cut(s)	377, 384
PkrI	GCNGC	3 cut(s)	74, 85, 214
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PpuMI	RGGWCCY	2 cut(s)	33, 145
Psp5II	RGGWCCY	2 cut(s)	33, 145
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	146, 147
PspPI	GGNCC	2 cut(s)	33, 145
PspPPI	RGGWCCY	2 cut(s)	33, 145
PvuII	CAGCTG	2 cut(s)	212, 548
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	3 cut(s)	73, 84, 213
Sau3AI	GATC	4 cut(s)	272, 400, 550, 579
Sau96I	GGNCC	2 cut(s)	33, 145
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	2 cut(s)	33, 145
Sse9I	AATT	4 cut(s)	101, 247, 453, 501
SsiI	CCGC	2 cut(s)	68, 279
SspMI	CTAG	3 cut(s)	80, 266, 381
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	4 cut(s)	15, 39, 230, 519
TasI	AATT	4 cut(s)	101, 247, 453, 501
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	377, 384
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	70, 114
TseI	GCWGC	3 cut(s)	72, 83, 212
TspDTI	ATGAA	4 cut(s)	142, 171, 213, 381
TspGWI	ACGGA	2 cut(s)	189, 402
TspRI	CASTG	2 cut(s)	70, 114
VpaK11BI	GGWCC	2 cut(s)	33, 145
XapI	RAATTY	2 cut(s)	101, 453
XbaI	TCTAGA	1 cut(s)	380
XspI	CTAG	3 cut(s)	80, 266, 381
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.