Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000426

Physical Location & Seq

Genomic Coordinates Forward (+)

21331429 .. 21332172

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTGATGGGGTTTTCATTGCATCTGTTGCTTCTATTTGTTCACTTGGCTATATGTTCTTCGGAGCAAACATTCCCCTATATGACTTCAAATGTCGAAGAAGTAGCCGGTAGGTCCTTCGACTACATTGTTGTTGGCGGAGGCACTGCGGGCTGCCCCCTAGCTGCAACCTTGTCTGAGAAATTCTCAGTGCTGTTGGTGGAACGAGGTGGCTCGCCTTACGGAGACCCCTTCATCTTAGAGGAGAAGTACTATGGATTCTCATTGCTCCAAACTGATGAATATACATCACCTGCACAAAGCTTTGTCTCGAAAGATGGTGTCAGCAATCTCAGAGGACGGGTGCTAGGAGGATCATCTGCTATTAATGGTGGGTTTTACAGCAGAGCAAGTAAGGATTTTGTCAAAAAGGTCGGGTGGGATAATAAGGGAGTTAGGGATGCTTATGAATGGGTGGAATCTAGATTAAGCATCTCTAAACCTGATTTGACTCCATGGTCGCATGTTGTTGCGACTAGCTTTCTTGAAGCTGGAATTTGCCCCTATAATGGTTTTAGTTTGGAGCATATTCAGGGAACAAAGATTGGTGCTAGTTCGTACGATAATCAGGGAAGAAGACACTTATCAGCTGATCTTCTACCGGCGGGAAATCCAAGCAAGATCACAGTTCTCTTGAATGCAACTGTAAACAAAGTCATCTTTTACAGAACTCGTAAGCATGGTAGTTCTTTAAATAGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

247

Amino Acids

26.89

Weight (kDa)

7.72

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	40 - 238	4.5e-08	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14185 AT1G14190 AT1G14190
fragaria_vesca	FvH4_4g31240
malus_domestica	MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica	Prupe.1G275800_v2.0.a1
pyrus_communis	pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis	RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata	RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora	Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii	Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa	Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha	Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana	Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
AasI	GACNNNNNNGTC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	301
AciI	CCGC	3 cut(s)	138, 149, 644
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	182, 534
AfaI	GTAC	2 cut(s)	251, 599
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	90, 527, 676
AluBI	AGCT	5 cut(s)	164, 303, 519, 530, 629
AluI	AGCT	5 cut(s)	164, 303, 519, 530, 629
Alw26I	GTCTC	2 cut(s)	219, 313
AlwI	GGATC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	153, 164
ApoI	RAATTY	2 cut(s)	182, 534
AseI	ATTAAT	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	16, 282
AvaII	GGWCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	140, 151
BccI	CCATC	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	219, 313
BfaI	CTAG	5 cut(s)	161, 347, 462, 516, 591
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	154, 165
BlsI	GCNGC	2 cut(s)	155, 166
BmcAI	AGTACT	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmsI	GCATC	3 cut(s)	31, 430, 480
BpiI	GAAGAC	1 cut(s)	622
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse118I	RCCGGY	2 cut(s)	107, 640
Bse3DI	GCAATG	2 cut(s)	17, 263
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	2 cut(s)	17, 263
BseMII	CTCAG	3 cut(s)	168, 201, 346
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	140, 151
BsgI	GTGCAG	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	108, 641
BsiWI	CGTACG	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	219, 313
BsmI	GAATGC	1 cut(s)	682
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	353, 631, 660
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	3 cut(s)	138, 149, 644
BspCNI	CTCAG	3 cut(s)	169, 200, 345
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	17, 263
BsrFI	RCCGGY	2 cut(s)	107, 640
BssAI	RCCGGY	2 cut(s)	107, 640
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	3 cut(s)	353, 631, 660
BssT1I	CCWWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	667, 685
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	151, 215
BstDEI	CTNAG	4 cut(s)	177, 187, 238, 332
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	356, 634, 663
BstMAI	GTCTC	2 cut(s)	219, 313
BstMBI	GATC	3 cut(s)	353, 631, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 150
BstNSI	RCATGY	1 cut(s)	506
BstV1I	GCAGC	2 cut(s)	140, 151
BstV2I	GAAGAC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 195
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	151, 215
Cfr10I	RCCGGY	2 cut(s)	107, 640
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	250, 598
CviAII	CATG	3 cut(s)	495, 503, 719
CviJI	RGCY	9 cut(s)	50, 107, 153, 164, 213, 303, 519, 530, 629
CviKI_1	RGCY	9 cut(s)	50, 107, 153, 164, 213, 303, 519, 530, 629
CviQI	GTAC	2 cut(s)	250, 598
DdeI	CTNAG	4 cut(s)	177, 187, 238, 332
DpnI	GATC	3 cut(s)	355, 633, 662
DpnII	GATC	3 cut(s)	353, 631, 660
DraI	TTTAAA	1 cut(s)	732
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	498, 506, 722
FatI	CATG	3 cut(s)	494, 502, 718
FauI	CCCGC	2 cut(s)	142, 637
Fnu4HI	GCNGC	2 cut(s)	154, 165
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	154, 165
FspBI	CTAG	5 cut(s)	161, 347, 462, 516, 591
GluI	GCNGC	2 cut(s)	154, 165
HapII	CCGG	2 cut(s)	108, 641
Hin1II	CATG	3 cut(s)	498, 506, 722
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	3 cut(s)	258, 458, 490
HpaII	CCGG	2 cut(s)	108, 641
HphI	GGTGA	2 cut(s)	16, 282
Hpy166II	GTNNAC	2 cut(s)	43, 688
Hpy188I	TCNGA	3 cut(s)	64, 178, 335
Hpy188III	TCNNGA	4 cut(s)	310, 462, 524, 673
Hpy8I	GTNNAC	2 cut(s)	43, 688
HpyAV	CCTTC	2 cut(s)	127, 241
HpyCH4III	ACNGT	2 cut(s)	667, 685
HpyCH4V	TGCA	4 cut(s)	22, 167, 296, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 150
HpyF3I	CTNAG	4 cut(s)	177, 187, 238, 332
Hsp92II	CATG	3 cut(s)	498, 506, 722
Kzo9I	GATC	3 cut(s)	353, 631, 660
LmnI	GCTCC	3 cut(s)	64, 273, 562
LpnPI	CCDG	7 cut(s)	121, 306, 495, 516, 557, 593, 654
Lsp1109I	GCAGC	2 cut(s)	140, 151
LweI	GCATC	3 cut(s)	31, 430, 480
MaeI	CTAG	5 cut(s)	161, 347, 462, 516, 591
MalI	GATC	3 cut(s)	355, 633, 662
MboI	GATC	3 cut(s)	353, 631, 660
MboII	GAAGA	5 cut(s)	51, 110, 624, 626, 627
MluCI	AATT	2 cut(s)	182, 534
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	134, 200, 235, 329, 344
MseI	TTAA	3 cut(s)	366, 467, 731
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	108, 641
Mva1269I	GAATGC	1 cut(s)	682
MwoI	GCNNNNNNNGC	2 cut(s)	28, 150
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	3 cut(s)	353, 631, 660
NlaIII	CATG	3 cut(s)	498, 506, 722
NspI	RCATGY	1 cut(s)	506
PaqCI	CACCTGC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	258, 458
Pfl23II	CGTACG	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	155, 166
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	114
PspLI	CGTACG	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	251, 599
RsaNI	GTAC	2 cut(s)	250, 598
SaqAI	TTAA	3 cut(s)	366, 467, 731
SatI	GCNGC	2 cut(s)	154, 165
Sau3AI	GATC	3 cut(s)	353, 631, 660
Sau96I	GGNCC	1 cut(s)	114
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	484
SfaNI	GCATC	3 cut(s)	31, 430, 480
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	182, 534
SsiI	CCGC	3 cut(s)	138, 149, 644
SspMI	CTAG	5 cut(s)	161, 347, 462, 516, 591
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	667, 685
TaqI	TCGA	3 cut(s)	96, 120, 311
TasI	AATT	2 cut(s)	182, 534
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	258, 458
Tru1I	TTAA	3 cut(s)	366, 467, 731
Tru9I	TTAA	3 cut(s)	366, 467, 731
TscAI	CASTG	2 cut(s)	151, 195
TseI	GCWGC	2 cut(s)	153, 164
TspDTI	ATGAA	4 cut(s)	6, 223, 294, 462
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	151, 195
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	182, 534
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	5 cut(s)	161, 347, 462, 516, 591
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.